Rmu_sc0001502.1_g000014

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001502.1
OG0005498
Physical Location & Seq
Forward (+)
54289 .. 58126
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1197 bp
ctgcccgttcatcccaaaggttatttcatcctgaaagatcctgactttgatttgaaaggtttgcttgatcaggtggaatgttatacaagaacatggcaaattggaaccttgatcaggatgtttcaagtagagtgtgtaaacgaaggttatgttgagccttgttgtgtggagaacgatgaggttttagctcgtgcgttgcaagaagagctatctagacttgcaaaggaagaggccgcgggagtttctagttatggagatgcgcctttgcaagcgtcgattcttgcacaggattggctcggtccttcaagcagacacaatggttctgggcttgaaaatgttcaggatgcagtgaatgattttggcaggatgatggacaacaatgattatagaaatcaggaaaatgagggggatggtcctaggagaaatggaaatggggaagcatatgaaaacagtgatggagagcactcagtggatggggaagacttgttgcatccgtgggatataacagatgagtatgctcttgatggtgaagtagggagaagattgaatcagatggttcctgttcctcatattcctaaaacgaatgagaaaatacccacagttgatgaagagatatcagatcatcagaggcttattgaaagactgaagttgtatgagttggtggagtgtaagatcccgggagatgggaactgtcagtttcgcgctttatcagatcaactatatcgttcttctgaataccatggccgtgtaagagatcaaattattcaacagctcaagaatcaccccgaaatatatgatggttacgttccgatgggttatgttgattacataaagaaaatgagcaagagtggtgaatggggcgaccatgtcacgttgcaggctgctgcagattcgtatggtgtcaagatagttgttatcacttctttcaaggatacatgctatattgagatccttccacatgcttcaaaatctagtagagttatctgcttgagcttttgggctgaggtgcactacaattctatctatcctgaaggagaacttcctccgcccagtttaaagaaaaagaagcattggaggtttcaatttgtgttggcattttcataccttcggctcccaggatcagaggccgaaaactgttgcatgttcaaccttcagaattggccttggcatggttcccttgcttcctcactgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

398

Amino Acids

45.31

Weight (kDa)

4.96

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 226 - 316 6.6e-12 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 236, 702
AciI CCGC 3 cut(s) 234, 236, 1046
AclWI GGATC 4 cut(s) 32, 667, 943, 1126
AcoI YGGCCR 1 cut(s) 742
AcuI CTGAAG 3 cut(s) 665, 1050, 1136
AdeI CACNNNGTG 1 cut(s) 469
AfiI CCNNNNNNNGG 3 cut(s) 114, 683, 1169
AjnI CCWGG 1 cut(s) 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 188, 208, 772, 993
AluI AGCT 4 cut(s) 188, 208, 772, 993
Alw21I GWGCWC 2 cut(s) 465, 1011
Alw44I GTGCAC 1 cut(s) 1007
AlwI GGATC 4 cut(s) 32, 667, 943, 1126
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 4 cut(s) 231, 742, 1125, 1160
ApaLI GTGCAC 1 cut(s) 1007
ApeKI GCWGC 2 cut(s) 881, 884
Asp700I GAANNNNTTC 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 2 cut(s) 262, 704
AspS9I GGNCC 2 cut(s) 299, 413
AsuC2I CCSGG 2 cut(s) 677, 678
AsuHPI GGTGA 3 cut(s) 539, 773, 863
AvaI CYCGRG 1 cut(s) 676
AvaII GGWCC 2 cut(s) 299, 413
AvrII CCTAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 1011
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 2 cut(s) 465, 1011
BbvCI CCTCAGC 1 cut(s) 1002
BbvI GCAGC 2 cut(s) 868, 871
BccI CCATC 9 cut(s) 364, 404, 449, 467, 518, 547, 677, 791, 805
BceAI ACGGC 1 cut(s) 729
BciT130I CCWGG 1 cut(s) 1116
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 2 cut(s) 67, 111
BcnI CCSGG 2 cut(s) 677, 678
BfaI CTAG 4 cut(s) 213, 246, 417, 972
BfmI CTRYAG 1 cut(s) 885
BfuI GTATCC 1 cut(s) 925
BisI GCNGC 3 cut(s) 234, 882, 885
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 3 cut(s) 235, 883, 886
Bme1390I CCNGG 3 cut(s) 677, 678, 1116
Bme18I GGWCC 2 cut(s) 299, 413
BmeT110I CYCGRG 1 cut(s) 676
BmgT120I GGNCC 2 cut(s) 299, 413
BmiI GGNNCC 4 cut(s) 106, 558, 1112, 1174
BmrFI CCNGG 3 cut(s) 677, 678, 1116
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 3 cut(s) 247, 334, 499
BmuI ACTGGG 1 cut(s) 1044
BpiI GAAGAC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 758, 1009
BpuMI CCSGG 2 cut(s) 677, 678
BsaJI CCNNGG 7 cut(s) 234, 416, 494, 676, 739, 1114, 1163
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 683, 1169
Bse1I ACTGG 1 cut(s) 1050
BseBI CCWGG 1 cut(s) 1116
BseDI CCNNGG 7 cut(s) 234, 416, 494, 676, 739, 1114, 1163
BseGI GGATG 8 cut(s) 10, 27, 123, 349, 372, 415, 478, 490
BseLI CCNNNNNNNGG 3 cut(s) 114, 683, 1169
BseMII CTCAG 2 cut(s) 480, 993
BseNI ACTGG 1 cut(s) 1050
BseSI GKGCMC 1 cut(s) 1011
BseXI GCAGC 2 cut(s) 868, 871
Bsh1236I CGCG 2 cut(s) 236, 702
BshFI GGCC 4 cut(s) 233, 744, 1127, 1162
BsiHKAI GWGCWC 2 cut(s) 465, 1011
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 1 cut(s) 677
BslI CCNNNNNNNGG 3 cut(s) 114, 683, 1169
BsnI GGCC 4 cut(s) 233, 744, 1127, 1162
BsoBI CYCGRG 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 465, 1011
Bsp143I GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
Bsp19I CCATGG 1 cut(s) 739
BspACI CCGC 3 cut(s) 234, 236, 1046
BspANI GGCC 4 cut(s) 233, 744, 1127, 1162
BspCNI CTCAG 2 cut(s) 479, 994
BspFNI CGCG 2 cut(s) 236, 702
BspLI GGNNCC 4 cut(s) 106, 558, 1112, 1174
BspMAI CTGCAG 1 cut(s) 889
BspPI GGATC 4 cut(s) 32, 667, 943, 1126
BspQI GCTCTTC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 1050
BssECI CCNNGG 7 cut(s) 234, 416, 494, 676, 739, 1114, 1163
BssMI GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 3 cut(s) 416, 739, 1163
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 1116
Bst4CI ACNGT 4 cut(s) 452, 601, 692, 1136
Bst6I CTCTTC 3 cut(s) 198, 222, 603
BstC8I GCNNGC 2 cut(s) 270, 879
BstDEI CTNAG 2 cut(s) 466, 1002
BstDSI CCRYGG 3 cut(s) 234, 494, 739
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 8 cut(s) 10, 27, 123, 349, 372, 415, 478, 490
BstFNI CGCG 2 cut(s) 236, 702
BstHHI GCGC 2 cut(s) 262, 704
BstKTI GATC 9 cut(s) 40, 70, 114, 622, 675, 715, 757, 951, 1121
BstMBI GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 1116
BstNSI RCATGY 3 cut(s) 939, 962, 1144
BstSCI CCNGG 3 cut(s) 675, 676, 1114
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 1 cut(s) 1011
BstUI CGCG 2 cut(s) 236, 702
BstV1I GCAGC 2 cut(s) 868, 871
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 3 cut(s) 37, 672, 948
BstYI RGATCY 3 cut(s) 37, 672, 948
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 4 cut(s) 233, 744, 1127, 1162
BtgI CCRYGG 3 cut(s) 234, 494, 739
BtsCI GGATG 8 cut(s) 10, 27, 123, 349, 372, 415, 478, 490
BtsI GCAGTG 2 cut(s) 354, 1187
BtsIMutI CAGTG 4 cut(s) 354, 457, 474, 1187
Cac8I GCNNGC 2 cut(s) 270, 879
CfoI GCGC 2 cut(s) 262, 704
Cfr13I GGNCC 2 cut(s) 299, 413
Cfr42I CCGCGG 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 676
CseI GACGC 1 cut(s) 261
CviAII CATG 7 cut(s) 93, 740, 866, 936, 959, 1141, 1169
DdeI CTNAG 2 cut(s) 466, 1002
DpnI GATC 9 cut(s) 39, 69, 113, 621, 674, 714, 756, 950, 1120
DpnII GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
DraI TTTAAA 1 cut(s) 1056
DraIII CACNNNGTG 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 3 cut(s) 198, 222, 603
EarI CTCTTC 3 cut(s) 198, 222, 603
EciI GGCGGA 1 cut(s) 1035
Eco130I CCWWGG 3 cut(s) 416, 739, 1163
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 299, 413
Eco57I CTGAAG 3 cut(s) 665, 1050, 1136
Eco88I CYCGRG 1 cut(s) 676
EcoNI CCTNNNNNAGG 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 1114
EcoRV GATATC 1 cut(s) 615
EcoT14I CCWWGG 3 cut(s) 416, 739, 1163
ErhI CCWWGG 3 cut(s) 416, 739, 1163
FaeI CATG 7 cut(s) 96, 743, 869, 939, 962, 1144, 1172
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 1023, 1055
FatI CATG 7 cut(s) 92, 739, 865, 935, 958, 1140, 1168
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 2 cut(s) 67, 111
Fnu4HI GCNGC 3 cut(s) 234, 882, 885
FokI GGATG 7 cut(s) 14, 130, 356, 379, 422, 477, 485
Fsp4HI GCNGC 3 cut(s) 234, 882, 885
FspBI CTAG 4 cut(s) 213, 246, 417, 972
GlaI GCGC 2 cut(s) 261, 703
GluI GCNGC 3 cut(s) 234, 882, 885
HaeIII GGCC 4 cut(s) 233, 744, 1127, 1162
HapII CCGG 1 cut(s) 677
HgaI GACGC 1 cut(s) 261
HhaI GCGC 2 cut(s) 262, 704
Hin1II CATG 7 cut(s) 96, 743, 869, 939, 962, 1144, 1172
Hin6I GCGC 2 cut(s) 260, 702
HinP1I GCGC 2 cut(s) 260, 702
HinfI GANTC 4 cut(s) 277, 547, 778, 890
HpaII CCGG 1 cut(s) 677
HphI GGTGA 3 cut(s) 539, 773, 863
Hpy166II GTNNAC 2 cut(s) 139, 1009
Hpy188I TCNGA 8 cut(s) 552, 619, 627, 712, 733, 810, 1123, 1155
Hpy8I GTNNAC 2 cut(s) 139, 1009
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 6 cut(s) 137, 312, 962, 1025, 1115, 1160
HpyCH4III ACNGT 4 cut(s) 452, 601, 692, 1136
HpyCH4IV ACGT 2 cut(s) 804, 872
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 2 cut(s) 466, 1002
HpySE526I ACGT 2 cut(s) 804, 872
Hsp92II CATG 7 cut(s) 96, 743, 869, 939, 962, 1144, 1172
HspAI GCGC 2 cut(s) 260, 702
Ksp22I TGATCA 2 cut(s) 67, 111
KspI CCGCGG 1 cut(s) 237
Kzo9I GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 2 cut(s) 868, 871
LweI GCATC 3 cut(s) 247, 334, 499
MaeI CTAG 4 cut(s) 213, 246, 417, 972
MaeII ACGT 2 cut(s) 804, 872
MaeIII GTNAC 2 cut(s) 800, 868
MalI GATC 9 cut(s) 39, 69, 113, 621, 674, 714, 756, 950, 1120
MboI GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
MboII GAAGA 6 cut(s) 215, 239, 491, 552, 620, 720
MflI RGATCY 3 cut(s) 37, 672, 948
MhlI GDGCHC 2 cut(s) 465, 1011
MluCI AATT 5 cut(s) 99, 759, 1015, 1082, 1156
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 1 cut(s) 1055
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 3 cut(s) 677, 678, 1116
MvaI CCWGG 1 cut(s) 1116
MvnI CGCG 2 cut(s) 236, 702
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 2 cut(s) 677, 678
NcoI CCATGG 1 cut(s) 739
NdeI CATATG 1 cut(s) 442
NdeII GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
NlaIII CATG 7 cut(s) 96, 743, 869, 939, 962, 1144, 1172
NlaIV GGNNCC 4 cut(s) 106, 558, 1112, 1174
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 3 cut(s) 939, 962, 1144
PciSI GCTCTTC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 277, 547, 778, 890
PflFI GACNNNGTC 1 cut(s) 866
PkrI GCNGC 3 cut(s) 235, 883, 886
Psp6I CCWGG 1 cut(s) 1114
PspGI CCWGG 1 cut(s) 1114
PspN4I GGNNCC 4 cut(s) 106, 558, 1112, 1174
PspPI GGNCC 2 cut(s) 299, 413
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 3 cut(s) 37, 672, 948
PsyI GACNNNGTC 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 744
SacII CCGCGG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 1055
SatI GCNGC 3 cut(s) 234, 882, 885
Sau3AI GATC 9 cut(s) 37, 67, 111, 619, 672, 712, 754, 948, 1118
Sau96I GGNCC 2 cut(s) 299, 413
ScrFI CCNGG 3 cut(s) 677, 678, 1116
SduI GDGCHC 2 cut(s) 465, 1011
SfaNI GCATC 3 cut(s) 247, 334, 499
SfcI CTRYAG 1 cut(s) 885
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SinI GGWCC 2 cut(s) 299, 413
SmaI CCCGGG 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 773, 988
SmoI CTYRAG 2 cut(s) 773, 988
Sse9I AATT 5 cut(s) 99, 759, 1015, 1082, 1156
SsiI CCGC 3 cut(s) 234, 236, 1046
SspMI CTAG 4 cut(s) 213, 246, 417, 972
StyD4I CCNGG 3 cut(s) 675, 676, 1114
StyI CCWWGG 3 cut(s) 416, 739, 1163
TaaI ACNGT 4 cut(s) 452, 601, 692, 1136
TaiI ACGT 2 cut(s) 807, 875
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 287
TasI AATT 5 cut(s) 99, 759, 1015, 1082, 1156
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 4 cut(s) 277, 547, 778, 890
Tru1I TTAA 1 cut(s) 1055
Tru9I TTAA 1 cut(s) 1055
TscAI CASTG 4 cut(s) 354, 457, 474, 1194
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 2 cut(s) 881, 884
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 4 cut(s) 16, 459, 621, 1089
TspGWI ACGGA 1 cut(s) 483
TspMI CCCGGG 1 cut(s) 676
TspRI CASTG 4 cut(s) 354, 457, 474, 1194
Tth111I GACNNNGTC 1 cut(s) 866
VneI GTGCAC 1 cut(s) 1007
VpaK11BI GGWCC 2 cut(s) 299, 413
XagI CCTNNNNNAGG 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 212
XceI RCATGY 3 cut(s) 939, 962, 1144
XmaI CCCGGG 1 cut(s) 676
XmaJI CCTAGG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 4 cut(s) 213, 246, 417, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.