Rmu_sc0001608.1_g000001

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001608.1
OG0008669
Physical Location & Seq
Reverse (-)
193 .. 1144
952 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
atgcagaggcctcatgcatccaccactgtgcacagtgctgtctccggcgccttcaccctgatccgatcctcgcccgccacgtggcagtcggcaatcctcagcaacctcctgatcttcgttctgggctctccgattttggtttctgggctctctctttccggcattgctgctgcgtttttgctcggaactctcacttggcgcgcttttgggccatctgggtttctcttggtggcaacctacttcatcattggcacggcggtgacaaaggtgagaatggcacaaaaggaggctgagggggtagctgagaagagaaaaggaaggagaggcccaggcagtgttattggatccagtgctgctggttgcatttgtgcttttctcacgatatttctagtaggaggaaaggcatattcccggctctggcaactagggtttgttgccagtttctgtactaagttgagtgatactgtctcaagtgaggtgggaaaggcatatgggaaaacaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

168

Amino Acids

17.52

Weight (kDa)

10.25

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 38 - 167 7.7e-32 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 75, 257
AclWI GGATC 4 cut(s) 55, 60, 339, 352
AcvI CACGTG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 81, 417
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AleI CACNNNNGTG 2 cut(s) 26, 257
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 46, 472
Alw44I GTGCAC 1 cut(s) 29
AlwI GGATC 4 cut(s) 55, 60, 339, 352
AlwNI CAGNNNCTG 1 cut(s) 444
AoxI GGCC 3 cut(s) 8, 209, 325
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 167, 170, 353
AspLEI GCGC 3 cut(s) 50, 201, 203
AspS9I GGNCC 2 cut(s) 209, 326
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 3 cut(s) 46, 271, 280
BaeGI GKGCMC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 128, 150
BbrPI CACGTG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 2 cut(s) 98, 291
BbvI GCAGC 3 cut(s) 154, 157, 340
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 46, 472
BfaI CTAG 2 cut(s) 389, 425
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 3 cut(s) 168, 171, 354
BlsI GCNGC 3 cut(s) 169, 172, 355
Bme1390I CCNGG 2 cut(s) 330, 412
BmgT120I GGNCC 2 cut(s) 209, 326
BmiI GGNNCC 2 cut(s) 49, 346
BmrFI CCNGG 2 cut(s) 330, 412
BmsI GCATC 1 cut(s) 26
Bpu10I CCTNAGC 2 cut(s) 98, 291
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 412
BsaAI YACGTR 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 417
Bse1I ACTGG 2 cut(s) 348, 438
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 81, 417
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 3 cut(s) 112, 282, 294
BseNI ACTGG 2 cut(s) 348, 438
BsePI GCGCGC 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 3 cut(s) 154, 157, 340
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 10, 211, 327
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 3 cut(s) 45, 159, 412
BslI CCNNNNNNNGG 2 cut(s) 81, 417
BsmAI GTCTC 2 cut(s) 46, 472
BsnI GGCC 3 cut(s) 10, 211, 327
Bsp1286I GDGCHC 3 cut(s) 33, 128, 150
Bsp143I GATC 4 cut(s) 60, 65, 111, 344
BspACI CCGC 2 cut(s) 75, 257
BspANI GGCC 3 cut(s) 10, 211, 327
BspCNI CTCAG 3 cut(s) 111, 283, 295
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 49, 346
BspPI GGATC 4 cut(s) 55, 60, 339, 352
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 348, 438
BssECI CCNNGG 1 cut(s) 328
BssHII GCGCGC 1 cut(s) 199
BssMI GATC 4 cut(s) 60, 65, 111, 344
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 28, 35, 466
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 75, 201
BstDEI CTNAG 4 cut(s) 98, 291, 303, 450
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 3 cut(s) 50, 201, 203
BstKTI GATC 4 cut(s) 63, 68, 114, 347
BstMAI GTCTC 2 cut(s) 46, 472
BstMBI GATC 4 cut(s) 60, 65, 111, 344
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 328, 410
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 154, 157, 340
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 3 cut(s) 10, 211, 327
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 4 cut(s) 24, 40, 340, 355
Cac8I GCNNGC 2 cut(s) 75, 201
CaiI CAGNNNCTG 1 cut(s) 444
CfoI GCGC 3 cut(s) 50, 201, 203
Cfr13I GGNCC 2 cut(s) 209, 326
Csp6I GTAC 1 cut(s) 447
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 10, 126, 148, 211, 290, 302, 327, 415
CviKI_1 RGCY 8 cut(s) 10, 126, 148, 211, 290, 302, 327, 415
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 4 cut(s) 98, 291, 303, 450
DinI GGCGCC 1 cut(s) 49
DpnI GATC 4 cut(s) 62, 67, 113, 346
DpnII GATC 4 cut(s) 60, 65, 111, 344
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 128, 150
Eco72I CACGTG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 128, 150
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 406, 490, 492
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 82
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 168, 171, 354
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 2 cut(s) 128, 150
Fsp4HI GCNGC 3 cut(s) 168, 171, 354
FspBI CTAG 2 cut(s) 389, 425
GlaI GCGC 3 cut(s) 49, 200, 202
GluI GCNGC 3 cut(s) 168, 171, 354
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 3 cut(s) 10, 211, 327
HapII CCGG 3 cut(s) 45, 159, 412
HhaI GCGC 3 cut(s) 50, 201, 203
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 3 cut(s) 48, 199, 201
HinP1I GCGC 3 cut(s) 48, 199, 201
HpaII CCGG 3 cut(s) 45, 159, 412
HphI GGTGA 3 cut(s) 46, 271, 280
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 65, 132, 185
Hpy188III TCNNGA 2 cut(s) 109, 379
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 61, 312
HpyCH4III ACNGT 3 cut(s) 28, 35, 466
HpyCH4IV ACGT 2 cut(s) 80, 503
HpyCH4V TGCA 4 cut(s) 4, 17, 31, 363
HpyF3I CTNAG 4 cut(s) 98, 291, 303, 450
HpySE526I ACGT 2 cut(s) 80, 503
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 3 cut(s) 48, 199, 201
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 4 cut(s) 60, 65, 111, 344
Lsp1109I GCAGC 3 cut(s) 154, 157, 340
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 389, 425
MaeII ACGT 2 cut(s) 80, 503
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 62, 67, 113, 346
MboI GATC 4 cut(s) 60, 65, 111, 344
MboII GAAGA 2 cut(s) 106, 319
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 3 cut(s) 33, 128, 150
Mly113I GGCGCC 1 cut(s) 48
MnlI CCTC 9 cut(s) 21, 79, 107, 116, 280, 286, 317, 389, 469
Mph1103I ATGCAT 1 cut(s) 19
MslI CAYNNNNRTG 2 cut(s) 26, 257
MspI CCGG 3 cut(s) 45, 159, 412
MspR9I CCNGG 2 cut(s) 330, 412
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 201
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 490
NdeII GATC 4 cut(s) 60, 65, 111, 344
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 49, 346
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 19
OliI CACNNNNGTG 2 cut(s) 26, 257
PauI GCGCGC 1 cut(s) 199
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PkrI GCNGC 3 cut(s) 169, 172, 355
PluTI GGCGCC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 49, 346
PspPI GGNCC 2 cut(s) 209, 326
PstNI CAGNNNCTG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 344
PteI GCGCGC 1 cut(s) 199
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 2 cut(s) 26, 257
SatI GCNGC 3 cut(s) 168, 171, 354
Sau3AI GATC 4 cut(s) 60, 65, 111, 344
Sau96I GGNCC 2 cut(s) 209, 326
ScrFI CCNGG 2 cut(s) 330, 412
SduI GDGCHC 3 cut(s) 33, 128, 150
SetI ASST 7 cut(s) 83, 108, 239, 270, 304, 480, 506
SfaNI GCATC 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 49
SmiMI CAYNNNNRTG 2 cut(s) 26, 257
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 2 cut(s) 75, 257
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 389, 425
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 328, 410
TaaI ACNGT 3 cut(s) 28, 35, 466
TaiI ACGT 2 cut(s) 83, 506
TatI WGTACW 1 cut(s) 446
TscAI CASTG 4 cut(s) 31, 40, 340, 355
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 167, 170, 353
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 4 cut(s) 31, 40, 340, 355
VneI GTGCAC 1 cut(s) 29
XspI CTAG 2 cut(s) 389, 425
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.