Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0003763

Physical Location & Seq

Genomic Coordinates Forward (+)

24044 .. 29628

Gene Structure 5585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

atggacgaccagaaggccggccccgaatcctcaaggccctccacctcgtttctcaaagccggcgaccggcaaatgttcacggtggagctccgacccggcgagaccaccatagtctcctggaagaagctcgtcagggacactagcaaggtcaatggcctggctccgcccactgccactgccactgccactgcccctgaccctccccccaacgctcaccctagcctcgagtctcgtatagctccggtacaaccttctggagagggagagggagaggaagggaaagatgaagctgcgccgaatcgttttagtgctgtgattgagaagattgagcgcctatatatgggtaaagatagtagcgacgatgaagatcaaaatattcctgatgacgatcagtatgatactgaggactcttttattgatgatgctgagttggatgaatattttgaagttgataattcagctataaaacatgacggattctttgttaacaggggccaactagaacggataaacacaactgctgcattacctaaccagcaaccaaagaaaaggagaagaaaagaggcaaagagcccccgtgaaactgatgacagtcgcgtgccaaataaacaagcaaagttaggtaagacagccgcagcaaagattacatcgggacttggaaagaactcatctgctctcactactattgctgtaaccacggaacaccgtgaagatgtgaaatttcagaatccattgaactcttccggttattcatccactaaaaagtctgctgattctaaaacagttatgaaaccttctcctttgaaagcattggatggagatgcttctgcactgcaagcagaggtgaaggatattgataagtctaagtcaggaatcctgcttcctaaggactcgagtaatagatttaaagatgctggtgggtcctctgatgcatcgtatcataagtatcatgataaaaatgcttattcgcaaaccaaaacccagttgggtagactatctggcaatgctgatgagctggaatcatcagttcgggcgaaagtgaaaaatgggatccgtcaactgcctgaccttaacctctcggacgggaaatactctgttccaactacaaaaacttcacatttgcatcgaaaggagggttctagtttaaggcccaagggttcgatgcttgaaaaggctattagggagttggagcggatggttgcagaatcaaggccacctgctatggagaatgcagagggagataattcatcccaagcaattaaaaggagattgcctagagaaataaagatgaagcttgctaaagttgctagactagcgcaggctagccatggaaaaatatcaaaagagttacttaaccggcttatgattattcttggccacttaatacagctcaggacgttaaagagaaacttaaaggttatgattagtaagggtctatcagacaaaaaggagaaagatgacaggtttcaacagatcaagaaggaagttatagatatggttaagataaatgtatcctctttggagtctaaggcattggaacaagctggagcctccgatgattttcaagatatagcctctggagcaaaagaagtctctaaaagaaagttgagcatggatcctgtattagaggacaagatttgtgacctctatgacctttatgttgatgggctggatgaagatataggtccacaaataagaaagctctatgctgagctagcgggattgtggcctagtggtttcatggacaatcatggcatcaaaagtgcaatttgtcgggcaaaagatagacggagggagcgatacagccaaaataaagatcaggagaaaatgaggaggaaaaagatgttgactccaaaattagaggagtctgttcgagttgacgcaattccccagcaacagtatatacgagagagattggcaactgaacctagcagtcatggttcagggaacaagcctgtatcaggtacaacagcagctgtgaggatacccagtccaataaacggtcctagctttgacaggcttaaacaagagaagctcaagggaagtgcaagtaattcccctgatgacacgagggtcgcagatggtgcattggtaaagaaaaaggtgaagaggaagccagatcaagagttggatgaaactcggatacggccagaaaaattaccttcccaacaaggtgaggaaagacaaaagtcattcaagcaggcgggtggtgtaccccataagtcaaaccatcaatccaccggccttcctagcgctgagcagtctagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0010468 GO:0016043 GO:0019222 GO:0030874 GO:0030875 GO:0031974 GO:0031981 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HUN

Protein Analysis

756

Amino Acids

83.61

Weight (kDa)

9.27

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HUN	PF08729	122 - 168	2.8e-12	HPC2 and ubinuclein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G77310 AT1G77310
fragaria_vesca	FvH4_2g27830 FvH4_2g27830 FvH4_2g27830 FvH4_2g27830
malus_domestica	MD08G1159200.v1.1
prunus_persica	Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1
pyrus_communis	pycom348g00040
rosa_chinensis	RchiOBHm_Chr6g0293421 RchiOBHm_Chr6g0296701
rosa_laevigata	RLG00000011667 RLG00000011669
rosa_multiflora	Rmu_sc0001741.1_g000003 Rmu_sc0001741.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171250
rosa_rugosa	Rorug06G0264500 Rorug06G0264600 Rorug06G0264700
rosa_samantha	Rh6AG376100 Rh6BG384400 Rh6CG362400 Rh6CG389500 Rh6CG389700 Rh6DG376900
rosa_wichuraiana	Rw6G032880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1225
AasI	GACNNNNNNGTC	1 cut(s)	2072
Acc36I	ACCTGC	1 cut(s)	1225
AccBSI	CCGCTC	1 cut(s)	1192
AccI	GTMKAC	1 cut(s)	991
AccII	CGCG	1 cut(s)	597
AciI	CCGC	5 cut(s)	164, 633, 1192, 1718, 2204
AclWI	GGATC	4 cut(s)	1045, 1058, 1610, 1623
AcoI	YGGCCR	2 cut(s)	1375, 2147
AcsI	RAATTY	1 cut(s)	719
AfaI	GTAC	3 cut(s)	246, 1966, 2214
AfeI	AGCGCT	1 cut(s)	2254
AfiI	CCNNNNNNNGG	4 cut(s)	66, 340, 1961, 2000
AgsI	TTSAA	7 cut(s)	446, 736, 805, 1169, 1469, 1565, 2197
AjnI	CCWGG	2 cut(s)	116, 156
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	4 cut(s)	95, 118, 234, 1597
AlwI	GGATC	4 cut(s)	1045, 1058, 1610, 1623
AlwNI	CAGNNNCTG	1 cut(s)	1976
Ama87I	CYCGRG	2 cut(s)	224, 892
Aor51HI	AGCGCT	1 cut(s)	2254
ApeKI	GCWGC	4 cut(s)	290, 521, 635, 1973
ApoI	RAATTY	1 cut(s)	719
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	4 cut(s)	295, 333, 1318, 2255
AspS9I	GGNCC	7 cut(s)	20, 36, 493, 921, 1149, 1685, 2003
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	206, 856, 2116, 2186
AsuNHI	GCTAGC	2 cut(s)	1322, 1714
AvaI	CYCGRG	2 cut(s)	224, 892
AvaII	GGWCC	3 cut(s)	921, 1685, 2003
AxyI	CCTNAGG	1 cut(s)	885
BalI	TGGCCA	1 cut(s)	1377
BamHI	GGATCC	2 cut(s)	1050, 1615
BanII	GRGCYC	2 cut(s)	90, 575
BauI	CACGAG	1 cut(s)	2068
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	277, 508, 647, 1985
BccI	CCATC	5 cut(s)	809, 1189, 1658, 2075, 2238
BceAI	ACGGC	1 cut(s)	2162
BciT130I	CCWGG	2 cut(s)	118, 158
BciVI	GTATCC	3 cut(s)	1522, 1977, 2136
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	4 cut(s)	95, 118, 234, 1597
BfoI	RGCGCY	2 cut(s)	334, 2256
BfuAI	ACCTGC	1 cut(s)	1225
BfuI	GTATCC	3 cut(s)	1522, 1977, 2136
BisI	GCNGC	5 cut(s)	291, 522, 633, 636, 1974
BlpI	GCTNAGC	2 cut(s)	1710, 2256
BlsI	GCNGC	5 cut(s)	292, 523, 634, 637, 1975
Bme1390I	CCNGG	3 cut(s)	96, 118, 158
Bme18I	GGWCC	3 cut(s)	921, 1685, 2003
BmeT110I	CYCGRG	2 cut(s)	224, 892
BmgT120I	GGNCC	7 cut(s)	20, 36, 493, 921, 1149, 1685, 2003
BmiI	GGNNCC	7 cut(s)	22, 162, 494, 922, 1052, 1549, 1617
BmrFI	CCNGG	3 cut(s)	96, 118, 158
BmrI	ACTGGG	2 cut(s)	976, 1983
BmsI	GCATC	8 cut(s)	412, 811, 901, 919, 941, 1132, 1152, 1764
BmtI	GCTAGC	2 cut(s)	1326, 1718
BmuI	ACTGGG	2 cut(s)	976, 1983
BoxI	GACNNNNGTC	1 cut(s)	2188
BpmI	CTGGAG	3 cut(s)	276, 1566, 1599
Bpu10I	CCTNAGC	1 cut(s)	1391
Bpu1102I	GCTNAGC	2 cut(s)	1710, 2256
BpuEI	CTTGAG	2 cut(s)	16, 2021
BpuMI	CCSGG	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	366, 387
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	696, 1152, 1327
BsaWI	WCCGGW	2 cut(s)	241, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 340, 1961, 2000
Bse118I	RCCGGY	5 cut(s)	17, 59, 66, 1356, 2240
Bse1I	ACTGG	2 cut(s)	982, 1989
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	1 cut(s)	1009
Bse8I	GATNNNNATC	2 cut(s)	366, 387
BseBI	CCWGG	2 cut(s)	118, 158
BseDI	CCNNGG	3 cut(s)	696, 1152, 1327
BseGI	GGATG	7 cut(s)	439, 752, 820, 1200, 1247, 1678, 2137
BseJI	GATNNNNATC	2 cut(s)	366, 387
BseLI	CCNNNNNNNGG	4 cut(s)	66, 340, 1961, 2000
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	5 cut(s)	393, 417, 1405, 1701, 2247
BseNI	ACTGG	2 cut(s)	982, 1989
BseRI	GAGGAG	2 cut(s)	1846, 1877
BseXI	GCAGC	4 cut(s)	277, 508, 647, 1985
BseYI	CCCAGC	1 cut(s)	1890
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	224, 892
BsiSI	CCGG	8 cut(s)	18, 60, 67, 96, 242, 744, 1357, 2241
BslFI	GGGAC	2 cut(s)	149, 666
BslI	CCNNNNNNNGG	4 cut(s)	66, 340, 1961, 2000
BsmAI	GTCTC	4 cut(s)	95, 118, 234, 1597
BsmFI	GGGAC	2 cut(s)	149, 666
BsmI	GAATGC	1 cut(s)	1234
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	224, 892
Bsp1286I	GDGCHC	2 cut(s)	90, 575
Bsp143I	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
Bsp1720I	GCTNAGC	2 cut(s)	1710, 2256
Bsp19I	CCATGG	1 cut(s)	1327
BspACI	CCGC	5 cut(s)	164, 633, 1192, 1718, 2204
BspCNI	CTCAG	5 cut(s)	394, 418, 1404, 1702, 2248
BspFNI	CGCG	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	7 cut(s)	22, 162, 494, 922, 1052, 1549, 1617
BspMI	ACCTGC	1 cut(s)	1225
BspOI	GCTAGC	2 cut(s)	1326, 1718
BspPI	GGATC	4 cut(s)	1045, 1058, 1610, 1623
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	1192
BsrDI	GCAATG	1 cut(s)	1009
BsrFI	RCCGGY	5 cut(s)	17, 59, 66, 1356, 2240
BsrI	ACTGG	2 cut(s)	982, 1989
BssAI	RCCGGY	5 cut(s)	17, 59, 66, 1356, 2240
BssECI	CCNNGG	3 cut(s)	696, 1152, 1327
BssMI	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
BssSI	CACGAG	1 cut(s)	2068
BssT1I	CCWWGG	2 cut(s)	1152, 1327
Bst2BI	CACGAG	1 cut(s)	2068
Bst2UI	CCWGG	2 cut(s)	118, 158
Bst4CI	ACNGT	6 cut(s)	82, 593, 707, 784, 1899, 2003
Bst6I	CTCTTC	2 cut(s)	745, 2102
BstAPI	GCANNNNNTGC	1 cut(s)	2084
BstC8I	GCNNGC	9 cut(s)	19, 61, 599, 837, 1296, 1320, 1324, 1716, 2202
BstDEI	CTNAG	8 cut(s)	402, 426, 864, 885, 1391, 1527, 1710, 2256
BstDSI	CCRYGG	2 cut(s)	696, 1327
BstENI	CCTNNNNNAGG	1 cut(s)	1959
BstF5I	GGATG	7 cut(s)	439, 752, 820, 1200, 1247, 1678, 2137
BstFNI	CGCG	1 cut(s)	597
BstH2I	RGCGCY	2 cut(s)	334, 2256
BstHHI	GCGC	4 cut(s)	295, 333, 1318, 2255
BstKTI	GATC	7 cut(s)	370, 391, 1053, 1476, 1618, 1819, 2122
BstMAI	GTCTC	4 cut(s)	95, 118, 234, 1597
BstMBI	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	7 cut(s)	836, 1304, 1313, 1580, 1715, 2084, 2250
BstNI	CCWGG	2 cut(s)	118, 158
BstPAI	GACNNNNGTC	1 cut(s)	2188
BstSCI	CCNGG	3 cut(s)	94, 116, 156
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	277, 508, 647, 1985
BstX2I	RGATCY	2 cut(s)	1050, 1615
BstYI	RGATCY	2 cut(s)	1050, 1615
Bsu36I	CCTNAGG	1 cut(s)	885
BsuI	GTATCC	3 cut(s)	1522, 1977, 2136
BtgI	CCRYGG	2 cut(s)	696, 1327
BtsCI	GGATG	7 cut(s)	439, 752, 820, 1200, 1247, 1678, 2137
BtsI	GCAGTG	5 cut(s)	168, 174, 180, 186, 830
BtsIMutI	CAGTG	5 cut(s)	168, 174, 180, 186, 830
BveI	ACCTGC	1 cut(s)	1225
Cac8I	GCNNGC	9 cut(s)	19, 61, 599, 837, 1296, 1320, 1324, 1716, 2202
CaiI	CAGNNNCTG	1 cut(s)	1976
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	4 cut(s)	295, 333, 1318, 2255
Cfr10I	RCCGGY	5 cut(s)	17, 59, 66, 1356, 2240
Cfr13I	GGNCC	7 cut(s)	20, 36, 493, 921, 1149, 1685, 2003
CseI	GACGC	1 cut(s)	1889
Csp6I	GTAC	3 cut(s)	245, 1965, 2213
CviAII	CATG	7 cut(s)	470, 950, 1328, 1612, 1741, 1751, 1937
CviQI	GTAC	3 cut(s)	245, 1965, 2213
DdeI	CTNAG	8 cut(s)	402, 426, 864, 885, 1391, 1527, 1710, 2256
DpnI	GATC	7 cut(s)	369, 390, 1052, 1475, 1617, 1818, 2121
DpnII	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
DraI	TTTAAA	1 cut(s)	907
DrdI	GACNNNNNNGTC	1 cut(s)	2072
DseDI	GACNNNNNNGTC	1 cut(s)	2072
EaeI	YGGCCR	2 cut(s)	1375, 2147
Eam1104I	CTCTTC	2 cut(s)	745, 2102
EarI	CTCTTC	2 cut(s)	745, 2102
EciI	GGCGGA	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	1152, 1327
Eco24I	GRGCYC	2 cut(s)	90, 575
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	921, 1685, 2003
Eco47III	AGCGCT	1 cut(s)	2254
Eco53kI	GAGCTC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	885
Eco88I	CYCGRG	2 cut(s)	224, 892
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	1959
EcoO109I	RGGNCCY	2 cut(s)	36, 921
EcoRII	CCWGG	2 cut(s)	116, 156
EcoT14I	CCWWGG	2 cut(s)	1152, 1327
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	2 cut(s)	90, 575
ErhI	CCWWGG	2 cut(s)	1152, 1327
FaeI	CATG	7 cut(s)	473, 953, 1331, 1615, 1744, 1754, 1940
FalI	AAGNNNNNCTT	4 cut(s)	1335, 1367, 1394, 1426
FaqI	GGGAC	2 cut(s)	149, 666
FatI	CATG	7 cut(s)	469, 949, 1327, 1611, 1740, 1750, 1936
FauI	CCCGC	2 cut(s)	1711, 2197
FblI	GTMKAC	1 cut(s)	991
Fnu4HI	GCNGC	5 cut(s)	291, 522, 633, 636, 1974
FokI	GGATG	7 cut(s)	446, 739, 827, 1207, 1234, 1685, 2144
FriOI	GRGCYC	2 cut(s)	90, 575
FseI	GGCCGGCC	1 cut(s)	21
Fsp4HI	GCNGC	5 cut(s)	291, 522, 633, 636, 1974
GlaI	GCGC	4 cut(s)	294, 332, 1317, 2254
GluI	GCNGC	5 cut(s)	291, 522, 633, 636, 1974
GsaI	CCCAGC	1 cut(s)	1894
GsuI	CTGGAG	3 cut(s)	276, 1566, 1599
HaeII	RGCGCY	2 cut(s)	334, 2256
HapII	CCGG	8 cut(s)	18, 60, 67, 96, 242, 744, 1357, 2241
HgaI	GACGC	1 cut(s)	1889
HhaI	GCGC	4 cut(s)	295, 333, 1318, 2255
Hin1II	CATG	7 cut(s)	473, 953, 1331, 1615, 1744, 1754, 1940
Hin6I	GCGC	4 cut(s)	293, 331, 1316, 2253
HinP1I	GCGC	4 cut(s)	293, 331, 1316, 2253
HincII	GTYRAC	4 cut(s)	487, 1058, 1848, 1879
HindII	GTYRAC	4 cut(s)	487, 1058, 1848, 1879
HindIII	AAGCTT	1 cut(s)	1292
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	8 cut(s)	18, 60, 67, 96, 242, 744, 1357, 2241
HphI	GGTGA	4 cut(s)	206, 856, 2116, 2186
Hpy166II	GTNNAC	8 cut(s)	78, 487, 992, 1058, 1688, 1848, 1879, 2213
Hpy188I	TCNGA	7 cut(s)	92, 726, 928, 1081, 1441, 1555, 2142
Hpy8I	GTNNAC	8 cut(s)	78, 487, 992, 1058, 1688, 1848, 1879, 2213
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	8 cut(s)	7, 261, 269, 804, 841, 1474, 2172, 2255
HpyCH4III	ACNGT	6 cut(s)	82, 593, 707, 784, 1899, 2003
HpyCH4IV	ACGT	1 cut(s)	1397
HpyF10VI	GCNNNNNNNGC	7 cut(s)	836, 1304, 1313, 1580, 1715, 2084, 2250
HpyF3I	CTNAG	8 cut(s)	402, 426, 864, 885, 1391, 1527, 1710, 2256
HpySE526I	ACGT	1 cut(s)	1397
Hsp92II	CATG	7 cut(s)	473, 953, 1331, 1615, 1744, 1754, 1940
HspAI	GCGC	4 cut(s)	293, 331, 1316, 2253
KroI	GCCGGC	2 cut(s)	17, 59
KroNI	GCCGGC	2 cut(s)	19, 61
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
LmnI	GCTCC	8 cut(s)	85, 93, 166, 244, 1189, 1547, 1580, 1795
Lsp1109I	GCAGC	4 cut(s)	277, 508, 647, 1985
LweI	GCATC	8 cut(s)	412, 811, 901, 919, 941, 1132, 1152, 1764
MaeII	ACGT	1 cut(s)	1397
MaeIII	GTNAC	3 cut(s)	691, 1347, 1640
MalI	GATC	7 cut(s)	369, 390, 1052, 1475, 1617, 1818, 2121
MbiI	CCGCTC	1 cut(s)	1192
MboI	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
MboII	GAAGA	8 cut(s)	133, 334, 377, 567, 722, 732, 1688, 2119
MflI	RGATCY	2 cut(s)	1050, 1615
MhlI	GDGCHC	2 cut(s)	90, 575
MlsI	TGGCCA	1 cut(s)	1377
MluCI	AATT	9 cut(s)	454, 719, 1243, 1257, 1767, 1856, 1884, 2053, 2156
MluNI	TGGCCA	1 cut(s)	1377
MlyI	GAGTC	6 cut(s)	236, 401, 884, 1532, 1843, 1874
MmeI	TCCRAC	5 cut(s)	115, 411, 1124, 1167, 2109
Mox20I	TGGCCA	1 cut(s)	1377
Mph1103I	ATGCAT	1 cut(s)	934
MroNI	GCCGGC	2 cut(s)	17, 59
MscI	TGGCCA	1 cut(s)	1377
Msp20I	TGGCCA	1 cut(s)	1377
MspA1I	CMGCKG	1 cut(s)	1976
MspI	CCGG	8 cut(s)	18, 60, 67, 96, 242, 744, 1357, 2241
MspR9I	CCNGG	3 cut(s)	96, 118, 158
Mva1269I	GAATGC	1 cut(s)	1234
MvaI	CCWGG	2 cut(s)	118, 158
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	7 cut(s)	836, 1304, 1313, 1580, 1715, 2084, 2250
NaeI	GCCGGC	2 cut(s)	19, 61
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	1327
NdeII	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
NgoMIV	GCCGGC	2 cut(s)	17, 59
NheI	GCTAGC	2 cut(s)	1322, 1714
NlaIII	CATG	7 cut(s)	473, 953, 1331, 1615, 1744, 1754, 1940
NlaIV	GGNNCC	7 cut(s)	22, 162, 494, 922, 1052, 1549, 1617
NmuCI	GTSAC	1 cut(s)	1640
NsiI	ATGCAT	1 cut(s)	934
PaeR7I	CTCGAG	2 cut(s)	224, 892
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	1 cut(s)	1225
PcsI	WCGNNNNNNNCGW	1 cut(s)	1795
PctI	GAATGC	1 cut(s)	1234
PdiI	GCCGGC	2 cut(s)	19, 61
PfeI	GAWTC	8 cut(s)	26, 298, 477, 727, 773, 873, 1019, 1205
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	292, 523, 634, 637, 1975
PleI	GAGTC	6 cut(s)	235, 401, 884, 1531, 1843, 1873
PpsI	GAGTC	6 cut(s)	235, 401, 884, 1531, 1843, 1873
PpuMI	RGGWCCY	1 cut(s)	921
PshAI	GACNNNNGTC	1 cut(s)	2188
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	921
Psp6I	CCWGG	2 cut(s)	116, 156
PspFI	CCCAGC	1 cut(s)	1890
PspGI	CCWGG	2 cut(s)	116, 156
PspN4I	GGNNCC	7 cut(s)	22, 162, 494, 922, 1052, 1549, 1617
PspPI	GGNCC	7 cut(s)	20, 36, 493, 921, 1149, 1685, 2003
PspPPI	RGGWCCY	1 cut(s)	921
PspXI	VCTCGAGB	2 cut(s)	224, 892
PstNI	CAGNNNCTG	1 cut(s)	1976
PsuI	RGATCY	2 cut(s)	1050, 1615
PvuII	CAGCTG	1 cut(s)	1976
RigI	GGCCGGCC	1 cut(s)	21
RsaI	GTAC	3 cut(s)	246, 1966, 2214
RsaNI	GTAC	3 cut(s)	245, 1965, 2213
SacI	GAGCTC	1 cut(s)	90
SatI	GCNGC	5 cut(s)	291, 522, 633, 636, 1974
Sau3AI	GATC	7 cut(s)	367, 388, 1050, 1473, 1615, 1816, 2119
Sau96I	GGNCC	7 cut(s)	20, 36, 493, 921, 1149, 1685, 2003
SchI	GAGTC	6 cut(s)	236, 401, 884, 1532, 1843, 1874
ScrFI	CCNGG	3 cut(s)	96, 118, 158
SduI	GDGCHC	2 cut(s)	90, 575
SfaNI	GCATC	8 cut(s)	412, 811, 901, 919, 941, 1132, 1152, 1764
Sfr274I	CTCGAG	2 cut(s)	224, 892
SinI	GGWCC	3 cut(s)	921, 1685, 2003
SlaI	CTCGAG	2 cut(s)	224, 892
SmlI	CTYRAG	4 cut(s)	31, 224, 892, 2036
SmoI	CTYRAG	4 cut(s)	31, 224, 892, 2036
Sse9I	AATT	9 cut(s)	454, 719, 1243, 1257, 1767, 1856, 1884, 2053, 2156
SsiI	CCGC	5 cut(s)	164, 633, 1192, 1718, 2204
SspI	AATATT	2 cut(s)	376, 440
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	94, 116, 156
StyI	CCWWGG	2 cut(s)	1152, 1327
TaaI	ACNGT	6 cut(s)	82, 593, 707, 784, 1899, 2003
TaiI	ACGT	1 cut(s)	1400
TaqI	TCGA	5 cut(s)	225, 893, 1126, 1160, 1873
TasI	AATT	9 cut(s)	454, 719, 1243, 1257, 1767, 1856, 1884, 2053, 2156
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	8 cut(s)	26, 298, 477, 727, 773, 873, 1019, 1205
TscAI	CASTG	5 cut(s)	175, 181, 187, 193, 837
TseFI	GTSAC	1 cut(s)	1640
TseI	GCWGC	4 cut(s)	290, 521, 635, 1973
Tsp45I	GTSAC	1 cut(s)	1640
TspGWI	ACGGA	5 cut(s)	489, 520, 713, 1043, 1804
TspRI	CASTG	5 cut(s)	175, 181, 187, 193, 837
VpaK11BI	GGWCC	3 cut(s)	921, 1685, 2003
XagI	CCTNNNNNAGG	1 cut(s)	1959
XapI	RAATTY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XhoI	CTCGAG	2 cut(s)	224, 892
XmiI	GTMKAC	1 cut(s)	991
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.