Rmu_sc0001742.1_g000002

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001742.1
OG0006947
Physical Location & Seq
Forward (+)
1373 .. 1786
414 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
atgggaactgttatggaattagaagctcccaaacccaaaatcgaagacgacgacgacgtctcccccgtcgagcaagtccgtctgacggtgaccaacgacgacgacccgaccctccccgtctggaccttccgaatgtggttcctaggcctcctctcctgcgccctcctctcctttctcaaccagttcttcgcctacagaaccgagccactcatcatcacccaaatcaccgtacaagtcgctacgctccccataggccacttcatggccagaatcctccccaccaccaagttccggatccccggacttggctctgaggtttccctgaaccccggtcccttcaacatcaaagagcatgtgctgatcgtagttgcacagtacagaatcgtcaaatattataatgtcaactgtatctaa

Protein Analysis

137

Amino Acids

15.55

Weight (kDa)

5.27

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 40 - 123 1.5e-19 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 60
AccB7I CCANNNNNTGG 1 cut(s) 262
AccIII TCCGGA 1 cut(s) 291
AclWI GGATC 2 cut(s) 289, 302
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 231, 377
AfiI CCNNNNNNNGG 4 cut(s) 85, 262, 291, 305
AgsI TTSAA 1 cut(s) 340
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 289, 302
Aor13HI TCCGGA 1 cut(s) 291
AoxI GGCC 3 cut(s) 145, 253, 264
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 123, 332
AsuC2I CCSGG 2 cut(s) 300, 330
AsuHPI GGTGA 3 cut(s) 100, 208, 217
AvaII GGWCC 2 cut(s) 123, 332
AvrII CCTAGG 1 cut(s) 142
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 51
BcnI CCSGG 2 cut(s) 300, 330
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 193
BlnI CCTAGG 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 300, 330
Bme18I GGWCC 2 cut(s) 123, 332
BmgT120I GGNCC 2 cut(s) 123, 332
BmiI GGNNCC 3 cut(s) 140, 296, 334
BmrFI CCNGG 2 cut(s) 300, 330
BpiI GAAGAC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 300, 330
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 142, 298, 328
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 262, 291, 305
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 142, 298, 328
BseLI CCNNNNNNNGG 4 cut(s) 85, 262, 291, 305
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 140, 155
BshFI GGCC 3 cut(s) 147, 255, 266
BsiSI CCGG 3 cut(s) 292, 300, 330
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 4 cut(s) 85, 262, 291, 305
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 3 cut(s) 147, 255, 266
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 294, 360
BspANI GGCC 3 cut(s) 147, 255, 266
BspCNI CTCAG 1 cut(s) 304
BspEI TCCGGA 1 cut(s) 291
BspLI GGNNCC 3 cut(s) 140, 296, 334
BspPI GGATC 2 cut(s) 289, 302
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 142, 298, 328
BssMI GATC 2 cut(s) 294, 360
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 5 cut(s) 10, 88, 229, 375, 407
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 88
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 2 cut(s) 297, 363
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 294, 360
BstNSI RCATGY 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 298, 328
BstSFI CTRYAG 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 147, 255, 266
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 123, 332
Csp6I GTAC 2 cut(s) 230, 376
CviAII CATG 2 cut(s) 262, 353
CviJI RGCY 6 cut(s) 26, 147, 205, 255, 266, 309
CviKI_1 RGCY 6 cut(s) 26, 147, 205, 255, 266, 309
CviQI GTAC 2 cut(s) 230, 376
DdeI CTNAG 1 cut(s) 312
DpnI GATC 2 cut(s) 296, 362
DpnII GATC 2 cut(s) 294, 360
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 123, 332
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 265, 356
FaiI YATR 5 cut(s) 14, 251, 263, 354, 396
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 261, 352
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 160
HaeIII GGCC 3 cut(s) 147, 255, 266
HapII CCGG 3 cut(s) 292, 300, 330
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 265, 356
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 270, 381
HpaII CCGG 3 cut(s) 292, 300, 330
HphI GGTGA 3 cut(s) 100, 208, 217
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 84, 131, 313
Hpy188III TCNNGA 2 cut(s) 121, 292
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 6 cut(s) 53, 56, 59, 71, 101, 104
HpyAV CCTTC 2 cut(s) 136, 346
HpyCH4III ACNGT 5 cut(s) 10, 88, 229, 375, 407
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 265, 356
HspAI GCGC 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 291
Kzo9I GATC 2 cut(s) 294, 360
LmnI GCTCC 2 cut(s) 31, 249
LpnPI CCDG 8 cut(s) 106, 169, 194, 280, 305, 313, 335, 343
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 296, 362
MboI GATC 2 cut(s) 294, 360
MboII GAAGA 2 cut(s) 56, 178
MflI RGATCY 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 266
MnlI CCTC 7 cut(s) 122, 158, 161, 173, 176, 284, 307
Mox20I TGGCCA 1 cut(s) 266
MroI TCCGGA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 3 cut(s) 292, 300, 330
MspR9I CCNGG 2 cut(s) 300, 330
NciI CCSGG 2 cut(s) 300, 330
NdeII GATC 2 cut(s) 294, 360
NlaIII CATG 2 cut(s) 265, 356
NlaIV GGNNCC 3 cut(s) 140, 296, 334
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 356
PceI AGGCCT 1 cut(s) 147
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 54, 63
PfeI GAWTC 2 cut(s) 270, 381
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 262
PsiI TTATAA 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 88
PspN4I GGNNCC 3 cut(s) 140, 296, 334
PspPI GGNCC 2 cut(s) 123, 332
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 231, 377
RsaNI GTAC 2 cut(s) 230, 376
Sau3AI GATC 2 cut(s) 294, 360
Sau96I GGNCC 2 cut(s) 123, 332
ScrFI CCNGG 2 cut(s) 300, 330
SetI ASST 4 cut(s) 28, 60, 128, 318
SfcI CTRYAG 1 cut(s) 193
SinI GGWCC 2 cut(s) 123, 332
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 147
SspI AATATT 1 cut(s) 392
SspMI CTAG 1 cut(s) 143
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 298, 328
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 5 cut(s) 10, 88, 229, 375, 407
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 42, 69
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 2 cut(s) 270, 381
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 68
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 123, 332
XceI RCATGY 1 cut(s) 356
XmaJI CCTAGG 1 cut(s) 142
XspI CTAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.