Rmu_sc0001900.1_g000002

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001900.1
OG0008465
Physical Location & Seq
Reverse (-)
13282 .. 16388
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1152 bp
atgaatcttctctcgctgtgttggaagccatttgggcgcggcgacggtgagggaggagtcgactctatcggaattgttggcgccaatttaaacggcggcggcggcggcggtggaggaagagatggcaaagatagcttgctttggttccgagatatcggaaagtacgcctggggagatttctccatggctgtggttcaggccaatcaggtcctcgaggaccaggggcagatcgagtccggcccctttgggaccttcgtcggcgtctatgatggccacggtggcccggaggccgctcaatacgtctgcgataatctatttagacattttcaagcagtatcagcggagacggaggatgttgtgacagcagagaccattcaaaatgcttttcgtcagacagaggaaggatttacggcccttgtttctgagttgtggagtactaaacccaatttagcaactgtaggaacatgctgtctagttggggtgatatgtcaggggaccctatttgtggcaagtcttggagattcccgtcttgttttggggaagaaagtgggcaacactggggaagttgcagctattcagttatccaccgaacacaatgccaatctcgatgagattaggtacgagctaaaggagctgcaccctcatgattctcaaattgtcgttttaaagcatggagtttggagagtaaaaggaatcatccaggtttctagatctataggtgatgtatatatgaaacatgcacagtttaacagggagccaattgctgcaaaattccgacttcctgaaccaatgaacatgcctatcatgtctgccactccaactattctttctcatgctctgcatccaaatgattcttttcttatctttgcgtctgatggtctatgggaacacttgagtaatgaacaagctgttgagattgtccacaagcatcctcatgcaggaagtgccaaaaggcttgttaagacagcgctccaagaagctgcaagaaaacgagaaatgcgttattcagatcttcggaaaatagacaagaaagtgcggcgccattttcatgatgatataactgttattgttttattcttgaaccatgacctaatctccagaggcacagcgcaagaacccccagtctcaataagaagtggtcttgatcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

383

Amino Acids

41.95

Weight (kDa)

6.18

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 84 - 329 4e-34 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 212
AccB1I GGYRCC 2 cut(s) 80, 1038
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 39
AciI CCGC 9 cut(s) 39, 96, 99, 102, 105, 108, 291, 341, 1036
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 770
AcyI GRCGYC 3 cut(s) 81, 261, 1039
AfaI GTAC 3 cut(s) 164, 436, 620
AfeI AGCGCT 1 cut(s) 969
AfiI CCNNNNNNNGG 2 cut(s) 505, 938
AgsI TTSAA 3 cut(s) 329, 377, 1081
AjnI CCWGG 3 cut(s) 167, 219, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 811, 843
AluBI AGCT 6 cut(s) 135, 572, 625, 634, 908, 980
AluI AGCT 6 cut(s) 135, 572, 625, 634, 908, 980
Alw26I GTCTC 3 cut(s) 338, 362, 1129
Ama87I CYCGRG 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 969
AoxI GGCC 6 cut(s) 198, 238, 271, 280, 288, 411
ApeKI GCWGC 4 cut(s) 569, 634, 764, 980
ApoI RAATTY 1 cut(s) 770
AspLEI GCGC 5 cut(s) 39, 83, 970, 1041, 1111
AspS9I GGNCC 7 cut(s) 208, 217, 239, 249, 281, 412, 495
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 59, 493, 731
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 4 cut(s) 208, 217, 249, 495
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 2 cut(s) 80, 1038
BbvI GCAGC 4 cut(s) 581, 621, 751, 967
BccI CCATC 3 cut(s) 116, 263, 869
BceAI ACGGC 2 cut(s) 109, 426
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 3 cut(s) 169, 221, 701
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 338, 362, 1129
BfaI CTAG 2 cut(s) 473, 708
BfmI CTRYAG 2 cut(s) 456, 714
BfoI RGCGCY 3 cut(s) 84, 971, 1042
BglI GCCNNNNNGGC 2 cut(s) 34, 279
BglII AGATCT 2 cut(s) 710, 1009
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 4 cut(s) 169, 221, 284, 701
Bme18I GGWCC 4 cut(s) 208, 217, 249, 495
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 7 cut(s) 208, 217, 239, 249, 281, 412, 495
BmiI GGNNCC 8 cut(s) 82, 146, 241, 250, 496, 497, 756, 1040
BmrFI CCNGG 4 cut(s) 169, 221, 284, 701
BmrI ACTGGG 2 cut(s) 567, 1115
BmsI GCATC 2 cut(s) 850, 937
BmuI ACTGGG 2 cut(s) 567, 1115
BoxI GACNNNNGTC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 1081
BpuEI CTTGAG 1 cut(s) 913
BpuMI CCSGG 1 cut(s) 284
BsaHI GRCGYC 3 cut(s) 81, 261, 1039
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 168, 183, 220, 274
BsaXI ACNNNNNCTCC 2 cut(s) 1079, 1109
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 938
Bse1I ACTGG 2 cut(s) 562, 1121
BseBI CCWGG 3 cut(s) 169, 221, 701
BseDI CCNNGG 4 cut(s) 168, 183, 220, 274
BseGI GGATG 4 cut(s) 358, 696, 841, 928
BseLI CCNNNNNNNGG 2 cut(s) 505, 938
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 562, 1121
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 4 cut(s) 581, 621, 751, 967
BsgI GTGCAG 1 cut(s) 620
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 6 cut(s) 200, 240, 273, 282, 290, 413
BshNI GGYRCC 2 cut(s) 80, 1038
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 237, 284
BslFI GGGAC 2 cut(s) 262, 508
BslI CCNNNNNNNGG 2 cut(s) 505, 938
BsmAI GTCTC 3 cut(s) 338, 362, 1129
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 262, 508
BsnI GGCC 6 cut(s) 200, 240, 273, 282, 290, 413
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 4 cut(s) 228, 710, 1009, 1144
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 9 cut(s) 39, 96, 99, 102, 105, 108, 291, 341, 1036
BspANI GGCC 6 cut(s) 200, 240, 273, 282, 290, 413
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 2 cut(s) 643, 1048
BspLI GGNNCC 8 cut(s) 82, 146, 241, 250, 496, 497, 756, 1040
BspT107I GGYRCC 2 cut(s) 80, 1038
BspTNI GGTCTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 562, 1121
BssECI CCNNGG 4 cut(s) 168, 183, 220, 274
BssMI GATC 4 cut(s) 228, 710, 1009, 1144
BssNI GRCGYC 3 cut(s) 81, 261, 1039
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 169, 221, 701
Bst4CI ACNGT 5 cut(s) 47, 278, 457, 744, 1063
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 3 cut(s) 81, 261, 1039
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 2 cut(s) 183, 274
BstENI CCTNNNNNAGG 1 cut(s) 936
BstF5I GGATG 4 cut(s) 358, 696, 841, 928
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 3 cut(s) 84, 971, 1042
BstHHI GCGC 5 cut(s) 39, 83, 970, 1041, 1111
BstKTI GATC 4 cut(s) 231, 713, 1012, 1147
BstMAI GTCTC 3 cut(s) 338, 362, 1129
BstMBI GATC 4 cut(s) 228, 710, 1009, 1144
BstMWI GCNNNNNNNGC 8 cut(s) 34, 102, 105, 132, 279, 338, 631, 944
BstNI CCWGG 3 cut(s) 169, 221, 701
BstNSI RCATGY 3 cut(s) 468, 740, 799
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 167, 219, 282, 699
BstSFI CTRYAG 2 cut(s) 456, 714
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 581, 621, 751, 967
BstX2I RGATCY 2 cut(s) 710, 1009
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 2 cut(s) 710, 1009
BsuRI GGCC 6 cut(s) 200, 240, 273, 282, 290, 413
BtgI CCRYGG 2 cut(s) 183, 274
BtsCI GGATG 4 cut(s) 358, 696, 841, 928
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 2 cut(s) 643, 1048
CfoI GCGC 5 cut(s) 39, 83, 970, 1041, 1111
Cfr13I GGNCC 7 cut(s) 208, 217, 239, 249, 281, 412, 495
CseI GACGC 2 cut(s) 250, 858
Csp6I GTAC 3 cut(s) 163, 435, 619
CviQI GTAC 3 cut(s) 163, 435, 619
DdeI CTNAG 1 cut(s) 423
DinI GGCGCC 2 cut(s) 82, 1040
DpnI GATC 4 cut(s) 230, 712, 1011, 1146
DpnII GATC 4 cut(s) 228, 710, 1009, 1144
DraI TTTAAA 2 cut(s) 90, 666
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 4 cut(s) 208, 217, 249, 495
Eco47III AGCGCT 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoO109I RGGNCCY 3 cut(s) 208, 249, 495
EcoRII CCWGG 3 cut(s) 167, 219, 699
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 183
EgeI GGCGCC 2 cut(s) 82, 1040
EheI GGCGCC 2 cut(s) 82, 1040
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 338
FaqI GGGAC 2 cut(s) 262, 508
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 1 cut(s) 60
FokI GGATG 4 cut(s) 365, 683, 828, 915
FspBI CTAG 2 cut(s) 473, 708
GlaI GCGC 5 cut(s) 38, 82, 969, 1040, 1110
GsuI CTGGAG 1 cut(s) 1081
HaeII RGCGCY 3 cut(s) 84, 971, 1042
HaeIII GGCC 6 cut(s) 200, 240, 273, 282, 290, 413
HapII CCGG 2 cut(s) 237, 284
HgaI GACGC 2 cut(s) 250, 858
HhaI GCGC 5 cut(s) 39, 83, 970, 1041, 1111
Hin1I GRCGYC 3 cut(s) 81, 261, 1039
Hin6I GCGC 5 cut(s) 37, 81, 968, 1039, 1109
HinP1I GCGC 5 cut(s) 37, 81, 968, 1039, 1109
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 8 cut(s) 4, 57, 62, 233, 521, 647, 693, 851
HpaII CCGG 2 cut(s) 237, 284
HphI GGTGA 3 cut(s) 59, 493, 731
Hpy166II GTNNAC 2 cut(s) 61, 922
Hpy188I TCNGA 9 cut(s) 71, 149, 158, 393, 424, 776, 874, 1009, 1017
Hpy188III TCNNGA 8 cut(s) 605, 644, 708, 782, 1049, 1078, 1098, 1142
Hpy8I GTNNAC 2 cut(s) 61, 922
Hpy99I CGWCG 2 cut(s) 47, 260
HpyAV CCTTC 2 cut(s) 262, 395
HpyCH4III ACNGT 5 cut(s) 47, 278, 457, 744, 1063
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 7 cut(s) 569, 637, 740, 767, 841, 938, 983
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 102, 105, 132, 279, 338, 631, 944
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 3 cut(s) 81, 261, 1039
HspAI GCGC 5 cut(s) 37, 81, 968, 1039, 1109
KasI GGCGCC 2 cut(s) 80, 1038
KflI GGGWCCC 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 228, 710, 1009, 1144
LmnI GCTCC 3 cut(s) 631, 754, 975
Lsp1109I GCAGC 4 cut(s) 581, 621, 751, 967
LweI GCATC 2 cut(s) 850, 937
MaeI CTAG 2 cut(s) 473, 708
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 230, 712, 1011, 1146
MbiI CCGCTC 1 cut(s) 293
MboI GATC 4 cut(s) 228, 710, 1009, 1144
MboII GAAGA 3 cut(s) 129, 553, 1004
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 710, 1009
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 6 cut(s) 72, 85, 445, 654, 759, 770
MluNI TGGCCA 1 cut(s) 273
Mly113I GGCGCC 2 cut(s) 81, 1039
MlyI GAGTC 3 cut(s) 56, 66, 242
MmeI TCCRAC 2 cut(s) 799, 842
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MseI TTAA 4 cut(s) 89, 665, 747, 960
MslI CAYNNNNRTG 5 cut(s) 188, 642, 846, 933, 1047
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 237, 284
MspR9I CCNGG 4 cut(s) 169, 221, 284, 701
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 3 cut(s) 169, 221, 701
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 8 cut(s) 34, 102, 105, 132, 279, 338, 631, 944
NarI GGCGCC 2 cut(s) 81, 1039
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 228, 710, 1009, 1144
NlaIV GGNNCC 8 cut(s) 82, 146, 241, 250, 496, 497, 756, 1040
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 3 cut(s) 468, 740, 799
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 2 cut(s) 643, 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 997
PfeI GAWTC 5 cut(s) 4, 521, 647, 693, 851
PleI GAGTC 3 cut(s) 56, 65, 241
PluTI GGCGCC 2 cut(s) 84, 1042
PpsI GAGTC 3 cut(s) 56, 65, 241
PpuMI RGGWCCY 3 cut(s) 208, 249, 495
PshAI GACNNNNGTC 1 cut(s) 254
Psp5II RGGWCCY 3 cut(s) 208, 249, 495
Psp6I CCWGG 3 cut(s) 167, 219, 699
PspGI CCWGG 3 cut(s) 167, 219, 699
PspN4I GGNNCC 8 cut(s) 82, 146, 241, 250, 496, 497, 756, 1040
PspPI GGNCC 7 cut(s) 208, 217, 239, 249, 281, 412, 495
PspPPI RGGWCCY 3 cut(s) 208, 249, 495
PspXI VCTCGAGB 1 cut(s) 212
PsuI RGATCY 2 cut(s) 710, 1009
RsaI GTAC 3 cut(s) 164, 436, 620
RsaNI GTAC 3 cut(s) 163, 435, 619
RseI CAYNNNNRTG 5 cut(s) 188, 642, 846, 933, 1047
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 4 cut(s) 89, 665, 747, 960
Sau3AI GATC 4 cut(s) 228, 710, 1009, 1144
Sau96I GGNCC 7 cut(s) 208, 217, 239, 249, 281, 412, 495
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 3 cut(s) 56, 66, 242
ScrFI CCNGG 4 cut(s) 169, 221, 284, 701
SfaNI GCATC 2 cut(s) 850, 937
SfcI CTRYAG 2 cut(s) 456, 714
SfiI GGCCNNNNNGGCC 1 cut(s) 279
SfoI GGCGCC 2 cut(s) 82, 1040
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 4 cut(s) 208, 217, 249, 495
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 5 cut(s) 188, 642, 846, 933, 1047
SmlI CTYRAG 2 cut(s) 212, 892
SmoI CTYRAG 2 cut(s) 212, 892
Sse9I AATT 6 cut(s) 72, 85, 445, 654, 759, 770
SsiI CCGC 9 cut(s) 39, 96, 99, 102, 105, 108, 291, 341, 1036
SspDI GGCGCC 2 cut(s) 80, 1038
SspMI CTAG 2 cut(s) 473, 708
StyD4I CCNGG 4 cut(s) 167, 219, 282, 699
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 5 cut(s) 47, 278, 457, 744, 1063
TaiI ACGT 1 cut(s) 303
TaqI TCGA 4 cut(s) 60, 213, 231, 606
TasI AATT 6 cut(s) 72, 85, 445, 654, 759, 770
TatI WGTACW 1 cut(s) 434
TauI GCSGC 7 cut(s) 42, 99, 102, 105, 108, 293, 1039
TfiI GAWTC 5 cut(s) 4, 521, 647, 693, 851
Tru1I TTAA 4 cut(s) 89, 665, 747, 960
Tru9I TTAA 4 cut(s) 89, 665, 747, 960
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 4 cut(s) 569, 634, 764, 980
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 5 cut(s) 17, 746, 806, 915, 1037
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 562
VpaK11BI GGWCC 4 cut(s) 208, 217, 249, 495
XagI CCTNNNNNAGG 1 cut(s) 936
XapI RAATTY 1 cut(s) 770
XbaI TCTAGA 1 cut(s) 707
XceI RCATGY 3 cut(s) 468, 740, 799
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 2 cut(s) 473, 708
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.