Rmu_sc0001940.1_g000019

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
OG0005958
Physical Location & Seq
Forward (+)
59457 .. 64409
4953 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
atgaagatcttcgtgaagactctcaaggggactcacttcgaagtcgaagtcaagcctcaggactcggttgctgatgtgaagaagtcgatagaaacttctcaaggttcggatgtatatcctgctacacaacagatgctaatccatcaaggaaaagtacttaaggatgggacgacattggaagaaaacaaagttgtggaaaatagctttgttgtgataatgttgacgaagagtaagagctcatccagtgaaggctcaagtgcatcaactgcaactacgactaaggcaccacagcccagtacaccttcagctgctccaactgcaacatccacgacacctcaggctcctgtctcaacatcagcaccgccagcatctgttaccacgccagctcccgtctcttcggccacaacagatttagattcctatggccaagcagcatctgatctagtagctggaaacaacttggagggaacaattcagcaaattctggatatgggtggaggaacctgggacagggatactgttgtacgtgctcttcgtgctgcgttcaacaacccagctagagcaattgattacttatattcaggtatccctgagcaacctgaagctcctgtagctcgtatccctgtgagtggtgatgctgcaaaccttccagcacaacctcctcagtcagcacagccagcatccactccttcaacaggacctaatgccaatcctttagacctctttccacagggtatccctgagcaacctgaagctcctgtagctcgtatccctgtgagtggtgatgctgcaaaccttccagcacaacctcctcagtcagcacagccagcatccactccttcaacaggacctaatgccaatcctttagacctctttccacagggccttccgaacctaggtgccggagctggagcgggtgcgggtgcgggtaatcttgattttctgcgtgacagcccacagttccaagccttgcgagctatggtgcaagctaatccacaaatattgcagcctatgcttcaagagttgggaaaacaaaatcctcagcttggccttccgaacctaggtgccggagctggagcgggtgcgggtgcgggtaatcttgattttctgcgtgacagcccacagttccaagccttgcgagctatggtgcaagctaatccacaaatattgcagcctatgcttcaagagttgggaaaacaaaatcctcagcttgtaaggttaattcaacaacatcaggctgacttccttcgcctaattaatgaacctgtcgaaggaggagaaggggatgtgttgggacaactggatgcagcaatgccacaggcaataactgtcactcccgaggagcgtgaagccatagaacgtcttgaagcaatgggctttgatagagcacttgtattggaggtgttcgttgcctgcaacaggaatgaagaattggctgcaaactacctcttagatcacatgcacgagtttgaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

492

Amino Acids

51.56

Weight (kDa)

4.6

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 4.5e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.7e-17 Ubiquitin family
UBA PF00627 157 - 192 2.9e-09 UBA/TS-N domain
XPC-binding PF09280 312 - 349 3.4e-15 XPC-binding domain
XPC-binding PF09280 367 - 422 5.7e-24 XPC-binding domain
UBA PF00627 448 - 483 1.1e-09 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 283, 899, 1064
AccBSI CCGCTC 2 cut(s) 914, 1079
AciI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
AcoI YGGCCR 2 cut(s) 399, 424
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 3 cut(s) 288, 621, 771
AfaI GTAC 3 cut(s) 156, 298, 525
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 7 cut(s) 547, 693, 843, 1019, 1184, 1226, 1367
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 1415, 1447
Alw21I GWGCWC 3 cut(s) 239, 532, 1390
Alw26I GTCTC 2 cut(s) 352, 397
AlwNI CAGNNNCTG 2 cut(s) 371, 437
Ama87I CYCGRG 1 cut(s) 1337
AoxI GGCC 4 cut(s) 399, 424, 883, 1048
ApeKI GCWGC 9 cut(s) 308, 431, 539, 638, 788, 1006, 1171, 1307, 1436
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 1257
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 2 cut(s) 895, 1060
AspS9I GGNCC 3 cut(s) 698, 848, 883
AsuHPI GGTGA 2 cut(s) 644, 794
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1337
AvaII GGWCC 2 cut(s) 698, 848
AvrII CCTAGG 2 cut(s) 895, 1060
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 3 cut(s) 283, 899, 1064
BanII GRGCYC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BauI CACGAG 1 cut(s) 1463
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 239, 532, 1390
BbvCI CCTCAGC 2 cut(s) 1041, 1206
BbvI GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BccI CCATC 2 cut(s) 150, 158
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BcoDI GTCTC 2 cut(s) 352, 397
BfaI CTAG 4 cut(s) 443, 558, 896, 1061
BfmI CTRYAG 2 cut(s) 609, 759
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BglII AGATCT 1 cut(s) 6
BisI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
BlnI CCTAGG 2 cut(s) 895, 1060
BlsI GCNGC 9 cut(s) 310, 433, 541, 640, 790, 1008, 1173, 1309, 1438
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 2 cut(s) 698, 848
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 3 cut(s) 698, 848, 883
BmiI GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 2 cut(s) 930, 1095
Bpu10I CCTNAGC 4 cut(s) 591, 741, 1041, 1206
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 238
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 1318, 1348
Bse1I ACTGG 3 cut(s) 243, 294, 1305
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 1317, 1377
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BseGI GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BseJI GATNNNNATC 2 cut(s) 114, 137
BseMI GCAATG 2 cut(s) 1317, 1377
BseMII CTCAG 8 cut(s) 71, 350, 582, 677, 732, 827, 1055, 1220
BseNI ACTGG 3 cut(s) 243, 294, 1305
BseRI GAGGAG 4 cut(s) 651, 801, 1290, 1355
BseXI GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 4 cut(s) 401, 426, 885, 1050
BshNI GGYRCC 3 cut(s) 283, 899, 1064
BsiHKAI GWGCWC 3 cut(s) 239, 532, 1390
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 2 cut(s) 903, 1068
BslFI GGGAC 4 cut(s) 43, 181, 521, 1308
BsmAI GTCTC 2 cut(s) 352, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 4 cut(s) 43, 181, 521, 1308
BsnI GGCC 4 cut(s) 401, 426, 885, 1050
BsoBI CYCGRG 1 cut(s) 1337
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 239, 532, 1390
Bsp143I GATC 3 cut(s) 6, 439, 1453
BspACI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
BspANI GGCC 4 cut(s) 401, 426, 885, 1050
BspCNI CTCAG 8 cut(s) 70, 349, 583, 676, 733, 826, 1054, 1219
BspLI GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 3 cut(s) 283, 899, 1064
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 2 cut(s) 914, 1079
BsrDI GCAATG 2 cut(s) 1317, 1377
BsrI ACTGG 3 cut(s) 243, 294, 1305
BssECI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BssMI GATC 3 cut(s) 6, 439, 1453
BssSI CACGAG 1 cut(s) 1463
BssT1I CCWWGG 2 cut(s) 895, 1060
Bst2BI CACGAG 1 cut(s) 1463
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 4 cut(s) 520, 960, 1125, 1330
Bst6I CTCTTC 3 cut(s) 221, 400, 537
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 266, 1012, 1177
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 9 cut(s) 366, 384, 678, 828, 975, 987, 1140, 1152, 1414
BstENI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
BstF5I GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BstKTI GATC 3 cut(s) 9, 442, 1456
BstMAI GTCTC 2 cut(s) 352, 397
BstMBI GATC 3 cut(s) 6, 439, 1453
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 1462
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 609, 759
BstV1I GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BsuRI GGCC 4 cut(s) 401, 426, 885, 1050
BtsCI GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 9 cut(s) 366, 384, 678, 828, 975, 987, 1140, 1152, 1414
CaiI CAGNNNCTG 2 cut(s) 371, 437
Cfr13I GGNCC 3 cut(s) 698, 848, 883
Csp6I GTAC 3 cut(s) 155, 297, 524
CspCI CAANNNNNGTGG 4 cut(s) 984, 1019, 1149, 1184
CviAII CATG 1 cut(s) 1459
CviQI GTAC 3 cut(s) 155, 297, 524
DpnI GATC 3 cut(s) 8, 441, 1455
DpnII GATC 3 cut(s) 6, 439, 1453
EaeI YGGCCR 2 cut(s) 399, 424
Eam1104I CTCTTC 3 cut(s) 221, 400, 537
EarI CTCTTC 3 cut(s) 221, 400, 537
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 895, 1060
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 698, 848
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 3 cut(s) 288, 621, 771
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1337
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
EcoO109I RGGNCCY 3 cut(s) 698, 848, 883
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 895, 1060
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 2 cut(s) 895, 1060
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 1462
FaqI GGGAC 4 cut(s) 43, 181, 521, 1308
FatI CATG 1 cut(s) 1458
FauI CCCGC 6 cut(s) 907, 913, 919, 1072, 1078, 1084
Fnu4HI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
FokI GGATG 8 cut(s) 122, 176, 226, 310, 667, 817, 1298, 1316
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
FspBI CTAG 4 cut(s) 443, 558, 896, 1061
GluI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 2 cut(s) 930, 1095
HaeIII GGCC 4 cut(s) 401, 426, 885, 1050
HapII CCGG 2 cut(s) 903, 1068
Hin1II CATG 1 cut(s) 1462
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 19, 31, 62, 416
HpaII CCGG 2 cut(s) 903, 1068
HphI GGTGA 2 cut(s) 644, 794
Hpy166II GTNNAC 2 cut(s) 222, 299
Hpy188I TCNGA 4 cut(s) 109, 439, 891, 1056
Hpy188III TCNNGA 9 cut(s) 13, 59, 485, 935, 1019, 1100, 1184, 1337, 1364
Hpy8I GTNNAC 2 cut(s) 222, 299
HpyCH4III ACNGT 4 cut(s) 520, 960, 1125, 1330
HpyCH4IV ACGT 2 cut(s) 526, 1360
HpySE526I ACGT 2 cut(s) 526, 1360
Hsp92II CATG 1 cut(s) 1462
Kzo9I GATC 3 cut(s) 6, 439, 1453
LguI GCTCTTC 1 cut(s) 537
Lsp1109I GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
LweI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
MaeI CTAG 4 cut(s) 443, 558, 896, 1061
MaeII ACGT 2 cut(s) 526, 1360
MaeIII GTNAC 4 cut(s) 373, 947, 1112, 1330
MalI GATC 3 cut(s) 8, 441, 1455
MbiI CCGCTC 2 cut(s) 914, 1079
MboI GATC 3 cut(s) 6, 439, 1453
MboII GAAGA 8 cut(s) 16, 28, 91, 191, 238, 387, 524, 1439
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 239, 532, 1390
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 159, 1220, 1257
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 903, 1068
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 505
NdeII GATC 3 cut(s) 6, 439, 1453
NlaIII CATG 1 cut(s) 1462
NlaIV GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
NmuCI GTSAC 3 cut(s) 947, 1112, 1330
NspI RCATGY 1 cut(s) 1462
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 9 cut(s) 310, 433, 541, 640, 790, 1008, 1173, 1309, 1438
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 2 cut(s) 698, 848
PshBI ATTAAT 1 cut(s) 1257
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 2 cut(s) 698, 848
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
PspPI GGNCC 3 cut(s) 698, 848, 883
PspPPI RGGWCCY 2 cut(s) 698, 848
PstNI CAGNNNCTG 2 cut(s) 371, 437
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 156, 298, 525
RsaNI GTAC 3 cut(s) 155, 297, 524
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 159, 1220, 1257
SatI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
Sau3AI GATC 3 cut(s) 6, 439, 1453
Sau96I GGNCC 3 cut(s) 698, 848, 883
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 3 cut(s) 239, 532, 1390
SfaNI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
SfcI CTRYAG 2 cut(s) 609, 759
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 2 cut(s) 698, 848
SmlI CTYRAG 4 cut(s) 23, 99, 158, 253
SmoI CTYRAG 4 cut(s) 23, 99, 158, 253
Sse9I AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
SsiI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
SspI AATATT 2 cut(s) 1002, 1167
SspMI CTAG 4 cut(s) 443, 558, 896, 1061
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 2 cut(s) 895, 1060
TaaI ACNGT 4 cut(s) 520, 960, 1125, 1330
TaiI ACGT 2 cut(s) 529, 1363
TaqI TCGA 4 cut(s) 39, 45, 86, 1269
TasI AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
TatI WGTACW 2 cut(s) 154, 296
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 159, 1220, 1257
Tru9I TTAA 3 cut(s) 159, 1220, 1257
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 3 cut(s) 947, 1112, 1330
TseI GCWGC 9 cut(s) 308, 431, 539, 638, 788, 1006, 1171, 1307, 1436
Tsp45I GTSAC 3 cut(s) 947, 1112, 1330
TspDTI ATGAA 3 cut(s) 17, 1275, 1440
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 698, 848
VspI ATTAAT 1 cut(s) 1257
XagI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 1462
XmaJI CCTAGG 2 cut(s) 895, 1060
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 443, 558, 896, 1061
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.