Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002021.1

Orthogroup ID

OG0014803

Physical Location & Seq

Genomic Coordinates Reverse (-)

55115 .. 55879

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgagcggcggtggtgataatagagtgaaggggtcgtggagtcctcaggaggactcaacgctgatcaagctggtggcggagcacggcccgcgcaactggtccttgatcagctccggcatccccggccggtccggaaagtcgtgtaggctgaggtggtgcaaccagctcagccccgacgtgcagcacaagccgttctcgccggccgaagacgccgcgatcgtcagggcccacgcgctgcacggcaacaagtgggccaccatcgcccggctcctccccggccgcaccgacaatgccatcaagaaccactggaactccacgctccggcggcggaggctggccgagtcgagctcggcctcttccgagttgaagcggttgattggcgccacgtcggacgacccggagacgaagcggcagtgcttgcgtggggcgtcggcggaggaggatagtttcaaagcggttgcggcgggagtagagggcgtgctgacgtcactgacgctgtcgccgcctgggcagaaagtggaaaacgaggtcgttttgaagagtgaggaggtgggggaggaggaggaagaggacaatgatgatcaccaagaggaggcggtggatgacgaggagaaatgtacggtggagatggaggagacgtgtctgatgacgatgatgcagcggatgatagcccaggaggtgaggaactacatcgagagcttacgggccgagaatgggctagtatttgggctacagtcgacggtccaaaatgatcggaaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

254

Amino Acids

28.08

Weight (kDa)

5.23

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 56	2.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 71	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 106	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 111	6.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24730
malus_domestica	MD01G1155100.v1.1 MD07G1224200.v1.1
prunus_persica	Prupe.2G252700_v2.0.a1
pyrus_communis	pycom01g17250 pycom07g20280
rosa_chinensis	RchiOBHm_Chr1g0370581
rosa_laevigata	RLG00000027025
rosa_multiflora	Rmu_co8167220.1_g000001 Rmu_sc0002021.1_g000013 Rmu_sc0033719.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286410
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367100 Rh1BG330600 Rh1DG362100
rosa_wichuraiana	Rw1G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	737
AccII	CGCG	3 cut(s)	91, 215, 233
AccIII	TCCGGA	1 cut(s)	131
AcoI	YGGCCR	4 cut(s)	124, 201, 277, 336
AcyI	GRCGYC	4 cut(s)	210, 381, 428, 485
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	4 cut(s)	264, 321, 592, 714
AflIII	ACRYGT	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	367, 451, 538
AjiI	CACGTC	3 cut(s)	178, 387, 639
AjnI	CCWGG	2 cut(s)	505, 672
AluBI	AGCT	5 cut(s)	70, 111, 166, 348, 699
AluI	AGCT	5 cut(s)	70, 111, 166, 348, 699
Alw21I	GWGCWC	2 cut(s)	84, 350
Alw26I	GTCTC	2 cut(s)	395, 629
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	9 cut(s)	85, 124, 201, 225, 252, 277, 336, 351, 705
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	181, 235, 658
AspLEI	GCGC	3 cut(s)	93, 235, 383
AspS9I	GGNCC	8 cut(s)	86, 99, 129, 225, 226, 252, 705, 742
AsuC2I	CCSGG	4 cut(s)	123, 265, 276, 398
AsuHPI	GGTGA	3 cut(s)	26, 575, 691
AvaII	GGWCC	3 cut(s)	99, 129, 742
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	229, 350
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	84, 350
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	193, 222, 670
BccI	CCATC	3 cut(s)	266, 302, 622
BceAI	ACGGC	3 cut(s)	100, 175, 256
BciT130I	CCWGG	2 cut(s)	507, 674
BclI	TGATCA	3 cut(s)	63, 105, 580
BcnI	CCSGG	4 cut(s)	123, 265, 276, 398
BcoDI	GTCTC	2 cut(s)	395, 629
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	123, 265, 276, 398, 507, 674
Bme18I	GGWCC	3 cut(s)	99, 129, 742
BmgBI	CACGTC	3 cut(s)	178, 387, 639
BmgT120I	GGNCC	8 cut(s)	86, 99, 129, 225, 226, 252, 705, 742
BmiI	GGNNCC	3 cut(s)	227, 269, 382
BmrFI	CCNGG	6 cut(s)	123, 265, 276, 398, 507, 674
BmsI	GCATC	2 cut(s)	126, 645
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	4 cut(s)	123, 265, 276, 398
BsaHI	GRCGYC	4 cut(s)	210, 381, 428, 485
BsaJI	CCNNGG	4 cut(s)	121, 274, 506, 672
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 623, 653
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 321, 592, 714
Bse118I	RCCGGY	2 cut(s)	126, 199
Bse1I	ACTGG	2 cut(s)	101, 311
Bse21I	CCTNAGG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	507, 674
BseDI	CCNNGG	4 cut(s)	121, 274, 506, 672
BseGI	GGATG	3 cut(s)	117, 607, 669
BseLI	CCNNNNNNNGG	4 cut(s)	264, 321, 592, 714
BseMII	CTCAG	3 cut(s)	59, 140, 181
BseNI	ACTGG	2 cut(s)	101, 311
BseRI	GAGGAG	8 cut(s)	260, 452, 560, 572, 575, 605, 623, 647
BseSI	GKGCMC	1 cut(s)	229
BseX3I	CGGCCG	3 cut(s)	124, 201, 277
BseXI	GCAGC	3 cut(s)	193, 222, 670
BsgI	GTGCAG	2 cut(s)	200, 221
Bsh1236I	CGCG	3 cut(s)	91, 215, 233
Bsh1285I	CGRYCG	4 cut(s)	127, 204, 219, 280
BshFI	GGCC	9 cut(s)	87, 126, 203, 227, 254, 279, 338, 353, 707
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	4 cut(s)	127, 204, 219, 280
BsiHKAI	GWGCWC	2 cut(s)	84, 350
BsiSI	CCGG	9 cut(s)	114, 123, 127, 132, 200, 265, 276, 322, 398
BslI	CCNNNNNNNGG	4 cut(s)	264, 321, 592, 714
BsmAI	GTCTC	2 cut(s)	395, 629
BsmBI	CGTCTC	2 cut(s)	395, 629
BsnI	GGCC	9 cut(s)	87, 126, 203, 227, 254, 279, 338, 353, 707
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	84, 229, 350
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	63, 105, 216, 580, 751
Bsp1720I	GCTNAGC	1 cut(s)	167
BspANI	GGCC	9 cut(s)	87, 126, 203, 227, 254, 279, 338, 353, 707
BspCNI	CTCAG	3 cut(s)	58, 141, 180
BspEI	TCCGGA	1 cut(s)	131
BspFNI	CGCG	3 cut(s)	91, 215, 233
BspLI	GGNNCC	3 cut(s)	227, 269, 382
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	2 cut(s)	126, 199
BsrI	ACTGG	2 cut(s)	101, 311
BssAI	RCCGGY	2 cut(s)	126, 199
BssECI	CCNNGG	4 cut(s)	121, 274, 506, 672
BssMI	GATC	5 cut(s)	63, 105, 216, 580, 751
BssNI	GRCGYC	4 cut(s)	210, 381, 428, 485
Bst2UI	CCWGG	2 cut(s)	507, 674
Bst4CI	ACNGT	3 cut(s)	622, 735, 742
Bst6I	CTCTTC	3 cut(s)	361, 533, 561
BstACI	GRCGYC	4 cut(s)	210, 381, 428, 485
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	5 cut(s)	89, 201, 336, 419, 479
BstDEI	CTNAG	3 cut(s)	45, 149, 167
BstF5I	GGATG	3 cut(s)	117, 607, 669
BstFNI	CGCG	3 cut(s)	91, 215, 233
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	3 cut(s)	93, 235, 383
BstKTI	GATC	5 cut(s)	66, 108, 219, 583, 754
BstMAI	GTCTC	2 cut(s)	395, 629
BstMBI	GATC	5 cut(s)	63, 105, 216, 580, 751
BstMCI	CGRYCG	4 cut(s)	127, 204, 219, 280
BstNI	CCWGG	2 cut(s)	507, 674
BstSCI	CCNGG	6 cut(s)	121, 263, 274, 396, 505, 672
BstSFI	CTRYAG	1 cut(s)	731
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	91, 215, 233
BstV1I	GCAGC	3 cut(s)	193, 222, 670
BstV2I	GAAGAC	1 cut(s)	213
BstZI	CGGCCG	3 cut(s)	124, 201, 277
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	9 cut(s)	87, 126, 203, 227, 254, 279, 338, 353, 707
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	3 cut(s)	178, 387, 639
BtsCI	GGATG	3 cut(s)	117, 607, 669
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	3 cut(s)	304, 419, 488
Cac8I	GCNNGC	5 cut(s)	89, 201, 336, 419, 479
CfoI	GCGC	3 cut(s)	93, 235, 383
Cfr10I	RCCGGY	2 cut(s)	126, 199
Cfr13I	GGNCC	8 cut(s)	86, 99, 129, 225, 226, 252, 705, 742
CpoI	CGGWCCG	1 cut(s)	129
CseI	GACGC	3 cut(s)	218, 417, 502
Csp6I	GTAC	1 cut(s)	618
CspI	CGGWCCG	1 cut(s)	129
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	45, 149, 167
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	5 cut(s)	65, 107, 218, 582, 753
DpnII	GATC	5 cut(s)	63, 105, 216, 580, 751
EaeI	YGGCCR	4 cut(s)	124, 201, 277, 336
EagI	CGGCCG	3 cut(s)	124, 201, 277
Eam1104I	CTCTTC	3 cut(s)	361, 533, 561
EarI	CTCTTC	3 cut(s)	361, 533, 561
EciI	GGCGGA	3 cut(s)	92, 343, 449
Ecl136II	GAGCTC	1 cut(s)	348
EclXI	CGGCCG	3 cut(s)	124, 201, 277
Eco24I	GRGCYC	2 cut(s)	229, 350
Eco47I	GGWCC	3 cut(s)	99, 129, 742
Eco52I	CGGCCG	3 cut(s)	124, 201, 277
Eco53kI	GAGCTC	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	505, 672
EcoT38I	GRGCYC	2 cut(s)	229, 350
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	395, 629
FauI	CCCGC	2 cut(s)	96, 457
FbaI	TGATCA	3 cut(s)	63, 105, 580
FblI	GTMKAC	1 cut(s)	737
FokI	GGATG	3 cut(s)	104, 614, 676
FriOI	GRGCYC	2 cut(s)	229, 350
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	3 cut(s)	92, 234, 382
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	9 cut(s)	87, 126, 203, 227, 254, 279, 338, 353, 707
HapII	CCGG	9 cut(s)	114, 123, 127, 132, 200, 265, 276, 322, 398
HgaI	GACGC	3 cut(s)	218, 417, 502
HhaI	GCGC	3 cut(s)	93, 235, 383
Hin1I	GRCGYC	4 cut(s)	210, 381, 428, 485
Hin6I	GCGC	3 cut(s)	91, 233, 381
HinP1I	GCGC	3 cut(s)	91, 233, 381
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HinfI	GANTC	3 cut(s)	40, 53, 341
HpaII	CCGG	9 cut(s)	114, 123, 127, 132, 200, 265, 276, 322, 398
HphI	GGTGA	3 cut(s)	26, 575, 691
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	4 cut(s)	361, 391, 645, 756
Hpy188III	TCNNGA	4 cut(s)	47, 132, 298, 694
Hpy8I	GTNNAC	1 cut(s)	738
Hpy99I	CGWCG	4 cut(s)	179, 391, 433, 742
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	622, 735, 742
HpyCH4IV	ACGT	4 cut(s)	177, 386, 485, 638
HpyCH4V	TGCA	4 cut(s)	159, 181, 238, 658
HpyF3I	CTNAG	3 cut(s)	45, 149, 167
HpySE526I	ACGT	4 cut(s)	177, 386, 485, 638
Hsp92I	GRCGYC	4 cut(s)	210, 381, 428, 485
HspAI	GCGC	3 cut(s)	91, 233, 381
KasI	GGCGCC	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	3 cut(s)	63, 105, 580
Kzo9I	GATC	5 cut(s)	63, 105, 216, 580, 751
LmnI	GCTCC	4 cut(s)	79, 116, 273, 324
Lsp1109I	GCAGC	3 cut(s)	193, 222, 670
LweI	GCATC	2 cut(s)	126, 645
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	4 cut(s)	177, 386, 485, 638
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	5 cut(s)	65, 107, 218, 582, 753
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	5 cut(s)	63, 105, 216, 580, 751
MboII	GAAGA	4 cut(s)	218, 348, 550, 578
MhlI	GDGCHC	3 cut(s)	84, 229, 350
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	3 cut(s)	47, 49, 350
MmeI	TCCRAC	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	9 cut(s)	114, 123, 127, 132, 200, 265, 276, 322, 398
MspR9I	CCNGG	6 cut(s)	123, 265, 276, 398, 507, 674
MvaI	CCWGG	2 cut(s)	507, 674
MvnI	CGCG	3 cut(s)	91, 215, 233
NaeI	GCCGGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	4 cut(s)	123, 265, 276, 398
NdeII	GATC	5 cut(s)	63, 105, 216, 580, 751
NgoMIV	GCCGGC	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	227, 269, 382
NmeAIII	GCCGAG	3 cut(s)	329, 364, 733
NmuCI	GTSAC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	496
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	3 cut(s)	47, 48, 349
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	3 cut(s)	47, 48, 349
Psp124BI	GAGCTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	505, 672
PspGI	CCWGG	2 cut(s)	505, 672
PspN4I	GGNNCC	3 cut(s)	227, 269, 382
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	8 cut(s)	86, 99, 129, 225, 226, 252, 705, 742
PsyI	GACNNNGTC	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
Rsr2I	CGGWCCG	1 cut(s)	129
RsrII	CGGWCCG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	736
Sau3AI	GATC	5 cut(s)	63, 105, 216, 580, 751
Sau96I	GGNCC	8 cut(s)	86, 99, 129, 225, 226, 252, 705, 742
SchI	GAGTC	3 cut(s)	47, 49, 350
ScrFI	CCNGG	6 cut(s)	123, 265, 276, 398, 507, 674
SduI	GDGCHC	3 cut(s)	84, 229, 350
SfaNI	GCATC	2 cut(s)	126, 645
SfcI	CTRYAG	1 cut(s)	731
SfoI	GGCGCC	1 cut(s)	382
SinI	GGWCC	3 cut(s)	99, 129, 742
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	6 cut(s)	121, 263, 274, 396, 505, 672
TaaI	ACNGT	3 cut(s)	622, 735, 742
TaiI	ACGT	4 cut(s)	180, 389, 488, 641
TaqI	TCGA	3 cut(s)	344, 693, 737
TauI	GCSGC	7 cut(s)	9, 215, 282, 328, 412, 464, 505
TscAI	CASTG	3 cut(s)	311, 419, 495
TseFI	GTSAC	1 cut(s)	486
TseI	GCWGC	3 cut(s)	181, 235, 658
Tsp45I	GTSAC	1 cut(s)	486
TspRI	CASTG	3 cut(s)	311, 419, 495
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	99, 129, 742
XmiI	GTMKAC	1 cut(s)	737
XspI	CTAG	1 cut(s)	719
ZraI	GACGTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.