Rmu_sc0002137.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002137.1
OG0013464
Physical Location & Seq
Forward (+)
5377 .. 7851
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2475 bp
ctgaagaagcaaaacgcagagctggctagctcctgcagaaaattctcagctctcaggctccaccttccaatcccaaacccaacttcttacctccccatttccacacgcagaacctacctaaacccaaaacccatctccctccaatgcctagaacaaccccaaaaccacggcacccatcccctttcagaccaccccaaccccgaaatctcatgctttcctcaaaagggtttctcccaaatcacccaggaaacctccggcaaatccctacacgcattgtgcgtaaagggcattgtgcctctcagagcgttctgctcaaacactttggtcaacatgtactcgaaatttggtcgtattggatatgcacgtaaggtgtttgatgatattcctgagagaaatgaagcttcttggaacacgatgatgtcgagctatgtgagagtggggttgtattccgactcggttaggttcttttgtgacatggttggctgtggtgttgggccgagtgggtttgtcattgctagtttggttactgcgtgtgataagtctggttctatgttttgtgaaggaatgcaagttcatggctttgtggtgaaacttgggttgttgtgtgatgtgtttgtgggaacttctgttttgcatttgtatgggacctatggtgttgtttcgaatgctagaaaggtgtttgaggagatgccggagaagaatgtggttacttggacttctttgattgttgggtattctaatgatggagatttgggagaagtagtgagtatatataagcgtatgaggcgtgaaggagtgtgttgcaatgataacactttggctatagtgtttagtacttgtggggtgctgggggatgagttattgggtcagcaagttcttggagatgttgtgaaacttgggttgcagactagtgtttctgtggcaaactccctcatatccatgtatggtagctttggtaatgtggccgaggcatgctatgtatttgatcatatggatgaaagggacacagtctcatggaattcgataatttctgctaatgtgcaaaatgggctttgtgaagaatcattacggtattttcatcgtatgcggcatgttaataaagaagtgaattctataacagtttcgacgttgttgggagtctgcggttccacagataaactgaagtggggcaggggaattcatggactagtggtgaaactggggatggaatcaaatgtttgtgttggcaatactcttttaagtatgtattctgaggctggaagatctgaagatgttgaattagttttcaaaagaatgatagagaaggatataatctcatggaactccatgttagcatgctatgttcagaatgaggagtcccaaaatgccctcaaacattttgctgaaatgcttcggacaagaaaaccaataaattatgtgactttaacaagtgcattgtctgcctgctcaaatccggaatttgtagttgaaggaaagattcttcatgctctagcagtcattgcaggcctacaatacaatctgatagtcggaaatgcattagttaccatgtatggaaagcttagtaaggcgcttgaagcagcgaaggtgttgcaaacaatgcccaagcgagatgaagttacttggaattctctcatcggtagttatgctgaaaacaaagaaccagatgaggtaattacagcttttaaactcatgagaaaagaaggaactccagcaaactacattacaataattaatgttctcggtgctttcctgattcctagtgatttactaaaacatgggatgcccatccatgcatacatagttctaacaggatttgaatcagaaaagtatgtgcagagttcccttattacgatgtatgctaagtgtggtgatttgaactcaagtaattccatatttagcggactaactgtcaagaactccattgcatggaatgcaatcattgctgcaaatgctaaccatggccttgaggaagctttgaaacttgctttgatgatgagaagagctggagtggactttgatcagttcagcttatctatcgcactttctgttagtgcagacctggctatgttggtagaaggtcagcagcttcatggcctggtagttaagcttggttttgacacagaccattatattacaaatgctgcgatggatatgtatggaaaatgcggggagatggaagatgttctgaagatgcttccctcaccaaccattaggtcacgattatcatggaacatcatgatatcatcgtttgccaaacatgggtgtttcgagaaggctagggagagctttcatgaaatggtaagtctgggtgtgaaacctgaccatgtcacctttgtctcacttctctctgcgtgcagtcatgggggtctcgtggatgatggtcttgcatactataatgcaatgactacagagttcggtgtcccaccagcaatagaacattgtgtgtgcgtaattgatcttcttgggagatcagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

825

Amino Acids

90.57

Weight (kDa)

6.47

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 233 - 280 1.8e-08 PPR repeat family
PPR PF01535 236 - 266 6.7e-07 PPR repeat
PPR_2 PF13041 435 - 483 5.8e-06 PPR repeat family
PPR PF01535 539 - 568 8.8e-06 PPR repeat
PPR PF01535 742 - 771 1.2e-07 PPR repeat
PPR_2 PF13041 742 - 786 2.2e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 1926
AccIII TCCGGA 1 cut(s) 1453
AciI CCGC 4 cut(s) 1087, 1143, 1899, 2166
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 7 cut(s) 41, 341, 1018, 1108, 1176, 1457, 1624
AcuI CTGAAG 4 cut(s) 23, 1181, 1287, 2207
AfaI GTAC 2 cut(s) 335, 835
AfiI CCNNNNNNNGG 3 cut(s) 224, 1926, 2259
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 7 cut(s) 1277, 1288, 1469, 1574, 1817, 1876, 1978
AhdI GACNNNNNGTC 1 cut(s) 1907
AhlI ACTAGT 2 cut(s) 908, 1186
AjnI CCWGG 3 cut(s) 243, 2058, 2094
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
Alw26I GTCTC 3 cut(s) 1015, 2341, 2372
Aor13HI TCCGGA 1 cut(s) 1453
AoxI GGCC 5 cut(s) 494, 963, 1504, 1960, 2092
ApeKI GCWGC 4 cut(s) 1577, 1943, 2083, 2141
ApoI RAATTY 7 cut(s) 41, 341, 1018, 1108, 1176, 1457, 1624
AseI ATTAAT 1 cut(s) 1731
Asp700I GAANNNNTTC 2 cut(s) 1389, 2181
AspLEI GCGC 1 cut(s) 1570
AspS9I GGNCC 2 cut(s) 494, 645
AsuHPI GGTGA 6 cut(s) 232, 598, 1204, 1880, 2193, 2320
AsuII TTCGAA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 170
BarI GAAGNNNNNNTAC 4 cut(s) 1050, 1082, 2442, 2474
BauI CACGAG 1 cut(s) 2369
BbvI GCAGC 4 cut(s) 1589, 1930, 2095, 2128
BccI CCATC 8 cut(s) 140, 183, 737, 1198, 1793, 2140, 2167, 2372
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 1570, 1604
BciT130I CCWGG 3 cut(s) 245, 2060, 2096
BclI TGATCA 2 cut(s) 985, 2017
BcoDI GTCTC 3 cut(s) 1015, 2341, 2372
BcuI ACTAGT 2 cut(s) 908, 1186
BfaI CTAG 9 cut(s) 27, 149, 516, 669, 909, 1187, 1490, 1758, 2277
BfmI CTRYAG 3 cut(s) 34, 822, 2406
BfoI RGCGCY 1 cut(s) 1571
BglII AGATCT 1 cut(s) 1262
BisI GCNGC 5 cut(s) 1088, 1578, 1944, 2084, 2142
BlsI GCNGC 5 cut(s) 1089, 1579, 1945, 2085, 2143
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 3 cut(s) 245, 2060, 2096
Bme18I GGWCC 1 cut(s) 645
BmeRI GACNNNNNGTC 1 cut(s) 1907
BmgT120I GGNCC 2 cut(s) 494, 645
BmiI GGNNCC 4 cut(s) 59, 172, 646, 1147
BmrFI CCNGG 3 cut(s) 245, 2060, 2096
BmrI ACTGGG 1 cut(s) 1208
BmsI GCATC 3 cut(s) 678, 1770, 2181
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 1208
BpmI CTGGAG 2 cut(s) 1692, 2025
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 1864, 1985
BsaAI YACGTR 1 cut(s) 365
BsaBI GATNNNNATC 2 cut(s) 1784, 1816
BsaI GGTCTC 1 cut(s) 2372
BsaJI CCNNGG 4 cut(s) 166, 243, 966, 1957
BsaWI WCCGGW 1 cut(s) 1453
BsaXI ACNNNNNCTCC 4 cut(s) 747, 777, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 1926, 2259
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 6 cut(s) 510, 811, 1497, 1920, 1938, 2406
Bse8I GATNNNNATC 2 cut(s) 1784, 1816
BseAI TCCGGA 1 cut(s) 1453
BseBI CCWGG 3 cut(s) 245, 2060, 2096
BseDI CCNNGG 4 cut(s) 166, 243, 966, 1957
BseGI GGATG 7 cut(s) 175, 859, 1000, 1209, 1785, 1785, 2380
BseJI GATNNNNATC 2 cut(s) 1784, 1816
BseLI CCNNNNNNNGG 3 cut(s) 224, 1926, 2259
BseMI GCAATG 6 cut(s) 510, 811, 1497, 1920, 1938, 2406
BseMII CTCAG 5 cut(s) 60, 67, 313, 378, 1242
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 2 cut(s) 698, 1367
BseXI GCAGC 4 cut(s) 1589, 1930, 2095, 2128
BseYI CCCAGC 1 cut(s) 847
BsgI GTGCAG 3 cut(s) 1853, 2073, 2374
BshFI GGCC 5 cut(s) 496, 965, 1506, 1962, 2094
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 3 cut(s) 255, 692, 1454
BslFI GGGAC 4 cut(s) 658, 1016, 1342, 2405
BslI CCNNNNNNNGG 3 cut(s) 224, 1926, 2259
BsmAI GTCTC 3 cut(s) 1015, 2341, 2372
BsmFI GGGAC 4 cut(s) 658, 1016, 1342, 2405
BsmI GAATGC 3 cut(s) 570, 670, 1936
BsnI GGCC 5 cut(s) 496, 965, 1506, 1962, 2094
Bso31I GGTCTC 1 cut(s) 2372
Bsp119I TTCGAA 1 cut(s) 662
Bsp13I TCCGGA 1 cut(s) 1453
Bsp143I GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
Bsp19I CCATGG 1 cut(s) 1957
BspACI CCGC 4 cut(s) 1087, 1143, 1899, 2166
BspANI GGCC 5 cut(s) 496, 965, 1506, 1962, 2094
BspCNI CTCAG 5 cut(s) 59, 66, 312, 379, 1243
BspEI TCCGGA 1 cut(s) 1453
BspHI TCATGA 3 cut(s) 1689, 2235, 2290
BspLI GGNNCC 4 cut(s) 59, 172, 646, 1147
BspMAI CTGCAG 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 1993
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 2372
BsrDI GCAATG 6 cut(s) 510, 811, 1497, 1920, 1938, 2406
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 4 cut(s) 166, 243, 966, 1957
BssMI GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
BssSI CACGAG 1 cut(s) 2369
BssT1I CCWWGG 1 cut(s) 1957
Bst2BI CACGAG 1 cut(s) 2369
Bst2UI CCWGG 3 cut(s) 245, 2060, 2096
Bst4CI ACNGT 4 cut(s) 1009, 1071, 1120, 1909
Bst6I CTCTTC 1 cut(s) 1993
BstAPI GCANNNNNTGC 5 cut(s) 1439, 1499, 1597, 1931, 1940
BstBAI YACGTR 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 7 cut(s) 24, 28, 973, 1336, 1444, 1504, 2353
BstDEI CTNAG 7 cut(s) 46, 53, 299, 387, 1251, 1559, 1860
BstDSI CCRYGG 2 cut(s) 166, 1957
BstF5I GGATG 7 cut(s) 175, 859, 1000, 1209, 1785, 1785, 2380
BstH2I RGCGCY 1 cut(s) 1571
BstHHI GCGC 1 cut(s) 1570
BstKTI GATC 5 cut(s) 988, 1265, 2020, 2458, 2471
BstMAI GTCTC 3 cut(s) 1015, 2341, 2372
BstMBI GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
BstNI CCWGG 3 cut(s) 245, 2060, 2096
BstNSI RCATGY 4 cut(s) 334, 975, 1094, 1338
BstSCI CCNGG 3 cut(s) 243, 2058, 2094
BstSFI CTRYAG 3 cut(s) 34, 822, 2406
BstV1I GCAGC 4 cut(s) 1589, 1930, 2095, 2128
BstX2I RGATCY 1 cut(s) 1262
BstYI RGATCY 1 cut(s) 1262
BsuRI GGCC 5 cut(s) 496, 965, 1506, 1962, 2094
BtgI CCRYGG 2 cut(s) 166, 1957
BtgZI GCGATG 1 cut(s) 2159
BtsCI GGATG 7 cut(s) 175, 859, 1000, 1209, 1785, 1785, 2380
Cac8I GCNNGC 7 cut(s) 24, 28, 973, 1336, 1444, 1504, 2353
CciI TCATGA 3 cut(s) 1689, 2235, 2290
CfoI GCGC 1 cut(s) 1570
Cfr13I GGNCC 2 cut(s) 494, 645
Csp6I GTAC 2 cut(s) 334, 834
CviQI GTAC 2 cut(s) 334, 834
DdeI CTNAG 7 cut(s) 46, 53, 299, 387, 1251, 1559, 1860
DpnI GATC 5 cut(s) 987, 1264, 2019, 2457, 2470
DpnII GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
DraI TTTAAA 1 cut(s) 1684
DriI GACNNNNNGTC 1 cut(s) 1907
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 1 cut(s) 1993
Eam1105I GACNNNNNGTC 1 cut(s) 1907
EarI CTCTTC 1 cut(s) 1993
Eco130I CCWWGG 1 cut(s) 1957
Eco147I AGGCCT 1 cut(s) 1506
Eco31I GGTCTC 1 cut(s) 2372
Eco32I GATATC 1 cut(s) 2241
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 4 cut(s) 23, 1181, 1287, 2207
EcoO109I RGGNCCY 1 cut(s) 645
EcoRI GAATTC 4 cut(s) 1018, 1108, 1176, 1624
EcoRII CCWGG 3 cut(s) 243, 2058, 2094
EcoRV GATATC 1 cut(s) 2241
EcoT14I CCWWGG 1 cut(s) 1957
EcoT22I ATGCAT 2 cut(s) 1537, 1795
ErhI CCWWGG 1 cut(s) 1957
FaqI GGGAC 4 cut(s) 658, 1016, 1342, 2405
FauI CCCGC 1 cut(s) 2159
FauNDI CATATG 1 cut(s) 990
FbaI TGATCA 2 cut(s) 985, 2017
Fnu4HI GCNGC 5 cut(s) 1088, 1578, 1944, 2084, 2142
FokI GGATG 7 cut(s) 162, 866, 1007, 1216, 1772, 1792, 2387
Fsp4HI GCNGC 5 cut(s) 1088, 1578, 1944, 2084, 2142
FspBI CTAG 9 cut(s) 27, 149, 516, 669, 909, 1187, 1490, 1758, 2277
GlaI GCGC 1 cut(s) 1569
GluI GCNGC 5 cut(s) 1088, 1578, 1944, 2084, 2142
GsaI CCCAGC 1 cut(s) 851
GsuI CTGGAG 2 cut(s) 1692, 2025
HaeII RGCGCY 1 cut(s) 1571
HaeIII GGCC 5 cut(s) 496, 965, 1506, 1962, 2094
HapII CCGG 3 cut(s) 255, 692, 1454
HhaI GCGC 1 cut(s) 1570
Hin6I GCGC 1 cut(s) 1568
HinP1I GCGC 1 cut(s) 1568
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 4 cut(s) 399, 1556, 1971, 2105
HinfI GANTC 8 cut(s) 452, 1061, 1137, 1208, 1355, 1477, 1753, 1817
HpaII CCGG 3 cut(s) 255, 692, 1454
HphI GGTGA 6 cut(s) 232, 598, 1204, 1880, 2193, 2320
Hpy166II GTNNAC 2 cut(s) 328, 2011
Hpy8I GTNNAC 2 cut(s) 328, 2011
Hpy99I CGWCG 1 cut(s) 1129
HpyAV CCTTC 9 cut(s) 74, 554, 785, 1297, 1463, 1576, 1694, 2069, 2266
HpyCH4III ACNGT 4 cut(s) 1009, 1071, 1120, 1909
HpyCH4IV ACGT 2 cut(s) 364, 1127
HpyF3I CTNAG 7 cut(s) 46, 53, 299, 387, 1251, 1559, 1860
HpySE526I ACGT 2 cut(s) 364, 1127
HspAI GCGC 1 cut(s) 1568
Kpn2I TCCGGA 1 cut(s) 1453
Ksp22I TGATCA 2 cut(s) 985, 2017
Kzo9I GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
LguI GCTCTTC 1 cut(s) 1993
LmnI GCTCC 2 cut(s) 35, 63
Lsp1109I GCAGC 4 cut(s) 1589, 1930, 2095, 2128
LweI GCATC 3 cut(s) 678, 1770, 2181
MaeI CTAG 9 cut(s) 27, 149, 516, 669, 909, 1187, 1490, 1758, 2277
MaeII ACGT 2 cut(s) 364, 1127
MaeIII GTNAC 8 cut(s) 470, 523, 706, 1417, 1540, 1615, 2214, 2326
MalI GATC 5 cut(s) 987, 1264, 2019, 2457, 2470
MboI GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
MflI RGATCY 1 cut(s) 1262
MlyI GAGTC 3 cut(s) 446, 1146, 1364
MmeI TCCRAC 2 cut(s) 474, 1507
Mph1103I ATGCAT 2 cut(s) 1537, 1795
MroI TCCGGA 1 cut(s) 1453
MroXI GAANNNNTTC 2 cut(s) 1389, 2181
MseI TTAA 6 cut(s) 1095, 1238, 1424, 1683, 1731, 2103
MslI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
MspI CCGG 3 cut(s) 255, 692, 1454
MspR9I CCNGG 3 cut(s) 245, 2060, 2096
Mva1269I GAATGC 3 cut(s) 570, 670, 1936
MvaI CCWGG 3 cut(s) 245, 2060, 2096
NcoI CCATGG 1 cut(s) 1957
NdeI CATATG 1 cut(s) 990
NdeII GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
NheI GCTAGC 1 cut(s) 26
NlaIV GGNNCC 4 cut(s) 59, 172, 646, 1147
NmeAIII GCCGAG 2 cut(s) 522, 991
NmuCI GTSAC 4 cut(s) 470, 1417, 2214, 2326
NsiI ATGCAT 2 cut(s) 1537, 1795
NspI RCATGY 4 cut(s) 334, 975, 1094, 1338
NspV TTCGAA 1 cut(s) 662
PaeI GCATGC 2 cut(s) 975, 1338
PagI TCATGA 3 cut(s) 1689, 2235, 2290
PceI AGGCCT 1 cut(s) 1506
PciI ACATGT 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 1993
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 419
PctI GAATGC 3 cut(s) 570, 670, 1936
PdmI GAANNNNTTC 2 cut(s) 1389, 2181
PfeI GAWTC 5 cut(s) 1061, 1208, 1477, 1753, 1817
PflFI GACNNNGTC 2 cut(s) 1007, 2324
PflMI CCANNNNNTGG 1 cut(s) 1926
PkrI GCNGC 5 cut(s) 1089, 1579, 1945, 2085, 2143
PleI GAGTC 3 cut(s) 446, 1145, 1363
PpsI GAGTC 3 cut(s) 446, 1145, 1363
Ppu21I YACGTR 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 645
PscI ACATGT 1 cut(s) 330
PshBI ATTAAT 1 cut(s) 1731
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 3 cut(s) 243, 2058, 2094
PspFI CCCAGC 1 cut(s) 847
PspGI CCWGG 3 cut(s) 243, 2058, 2094
PspN4I GGNNCC 4 cut(s) 59, 172, 646, 1147
PspPI GGNCC 2 cut(s) 494, 645
PspPPI RGGWCCY 1 cut(s) 645
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 1262
PsyI GACNNNGTC 2 cut(s) 1007, 2324
RsaI GTAC 2 cut(s) 335, 835
RsaNI GTAC 2 cut(s) 334, 834
RseI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
SapI GCTCTTC 1 cut(s) 1993
SaqAI TTAA 6 cut(s) 1095, 1238, 1424, 1683, 1731, 2103
SatI GCNGC 5 cut(s) 1088, 1578, 1944, 2084, 2142
Sau3AI GATC 5 cut(s) 985, 1262, 2017, 2455, 2468
Sau96I GGNCC 2 cut(s) 494, 645
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 3 cut(s) 446, 1146, 1364
ScrFI CCNGG 3 cut(s) 245, 2060, 2096
SfaNI GCATC 3 cut(s) 678, 1770, 2181
SfcI CTRYAG 3 cut(s) 34, 822, 2406
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
SmlI CTYRAG 2 cut(s) 1879, 1964
SmoI CTYRAG 2 cut(s) 1879, 1964
SpeI ACTAGT 2 cut(s) 908, 1186
SphI GCATGC 2 cut(s) 975, 1338
SseBI AGGCCT 1 cut(s) 1506
SsiI CCGC 4 cut(s) 1087, 1143, 1899, 2166
SspMI CTAG 9 cut(s) 27, 149, 516, 669, 909, 1187, 1490, 1758, 2277
StuI AGGCCT 1 cut(s) 1506
StyD4I CCNGG 3 cut(s) 243, 2058, 2094
StyI CCWWGG 1 cut(s) 1957
TaaI ACNGT 4 cut(s) 1009, 1071, 1120, 1909
TaiI ACGT 2 cut(s) 367, 1130
TaqI TCGA 6 cut(s) 338, 422, 662, 1022, 1124, 2268
TatI WGTACW 2 cut(s) 333, 833
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 5 cut(s) 1061, 1208, 1477, 1753, 1817
Tru1I TTAA 6 cut(s) 1095, 1238, 1424, 1683, 1731, 2103
Tru9I TTAA 6 cut(s) 1095, 1238, 1424, 1683, 1731, 2103
TseFI GTSAC 4 cut(s) 470, 1417, 2214, 2326
TseI GCWGC 4 cut(s) 1577, 1943, 2083, 2141
Tsp45I GTSAC 4 cut(s) 470, 1417, 2214, 2326
Tth111I GACNNNGTC 2 cut(s) 1007, 2324
Van91I CCANNNNNTGG 1 cut(s) 1926
VpaK11BI GGWCC 1 cut(s) 645
VspI ATTAAT 1 cut(s) 1731
XapI RAATTY 7 cut(s) 41, 341, 1018, 1108, 1176, 1457, 1624
XceI RCATGY 4 cut(s) 334, 975, 1094, 1338
XmnI GAANNNNTTC 2 cut(s) 1389, 2181
XspI CTAG 9 cut(s) 27, 149, 516, 669, 909, 1187, 1490, 1758, 2277
ZrmI AGTACT 1 cut(s) 835
Zsp2I ATGCAT 2 cut(s) 1537, 1795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.