Rmu_sc0002159.1_g000001

Actin-binding domain of plant-specific actin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002159.1
OG0005604
Physical Location & Seq
Forward (+)
41028 .. 54003
12976 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1764 bp
atgggaagaccggtgccggcggtgttaagggaccatactggttcatggaattctggtttcatcgcacgcctaggctgtggttctgttctggaagctgaagcttggggtttgctgctatttttgaagatagctttttctctgcattgtcatcatatcttggttgaaattgattcagagattttagttactttggtcaatcaaggagtgcatgacttacatctttcaaaaattatcattgactattgtgaatccattcaaagacataagttggaaggagaaatgacgagggcaggccgtgattttggggacactatgcataaggatgccgttccagcagtttcagctgatgtaacttttgcctcaagtcgatttcctgattacaaaattggacctaacaatcagattgtggagacaaagctggatcaaaaggtactttcaatgaaggaagttgttgcacgcgagacagcacaattgttggaacagcagaaacgtctttcagttcgggaccttgccagtaaattcgagaaggggttggctgctgctgctaagttgtctgaagaggctaaacttagagaggcagcttctttggaaaagcatgtccttttgaagaagcttagagatgctctggaatcattaaaaggacgggtggcgggcagaaacaaggatgatgtggaggcagctatttcaatggtggaggctttagcagttcagttgactcaaagagaaggggagttgatgcaagaaaaagctgaagtgaagaaactagcaaattttcttaagcaggcttcagaagatgctaagaagctcgttgatgaagaaagagcttttgctcgtgctgaaattgaaaatgccaaagcagctgtccagagagtggaagaagctcttcaggagcaagaacgaacatcacgggcatcagggaagcaggacttggaagaactgatgaaagaggttcaagaggctaggcgaatcaaaatgctgcatcaaccaagcaaggtcatggacatggaacacgagcttcgagctttgagagcacaactcacacaaaagtctgaaaattctcttcgccttcagaaagagttggcaattagcaagaggagcttggaaaaaagttctcaaccatatgaactagatggccctgaagctttaggttcatatttgcggattaatcctttgtctgatgatgcaatagaactttctacatgctcaattcaatggtatcgtctatcatctgatggtgccagcaaggagcttatatcaggagcaataaaatcagtatatgccccagagccttttgacgtggggcggttcttgcaggcagatattttatttgatggccaaagactaacactgaccaccgctggtcccattgatcctgctgctggtttgggaagttatgtagaggcacttgtgcggaaacatgatattgagttcaatgtagttattacccaaatgaatggcgttaatcatctgtcagaatctatacatgtatttcatgtgggaaggatgaggattaaactgtgcaagggaaagacaactatttctaaagaatacttttcggcttcaatgcagctgtgcggagttagaggaggtgggaatgctgcagctcaggcattgttttggcaagtcaagcaaggtctttcctttgtattggcatttgaatcagaacgagagaggaatgcggccatcatgcttgcgaggagatttgctttcgattgtaatatcatgctagctgggccagatgacagagcacctttaggaacctaa

Protein Analysis

587

Amino Acids

65.23

Weight (kDa)

6.6

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 82 1.2e-09 Reverse transcriptase-like
SCAB-ABD PF16711 147 - 189 2.4e-24 Actin-binding domain of plant-specific actin-binding protein
SCAB_CC PF16712 193 - 360 9.7e-82 Coiled-coil regions of plant-specific actin-binding protein
SCAB-Ig PF16709 374 - 471 9.7e-45 Ig domain of plant-specific actin-binding protein
SCAB-PH PF17684 474 - 581 4.1e-58 PH domain of plant-specific actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 1235
AccB7I CCANNNNNTGG 1 cut(s) 871
AccII CGCG 1 cut(s) 459
AciI CCGC 8 cut(s) 20, 650, 1159, 1303, 1356, 1411, 1575, 1679
AclWI GGATC 2 cut(s) 429, 1364
AcoI YGGCCR 2 cut(s) 1333, 1680
AcsI RAATTY 4 cut(s) 49, 518, 769, 1054
AcuI CTGAAG 7 cut(s) 117, 576, 771, 771, 869, 1052, 1158
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 871, 1379
AflII CTTAAG 1 cut(s) 776
AflIII ACRYGT 1 cut(s) 1483
AgeI ACCGGT 1 cut(s) 10
AjiI CACGTC 1 cut(s) 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
Alw21I GWGCWC 2 cut(s) 1033, 1750
Alw26I GTCTC 2 cut(s) 404, 455
AlwI GGATC 2 cut(s) 429, 1364
AoxI GGCC 5 cut(s) 292, 1132, 1333, 1680, 1733
ApoI RAATTY 4 cut(s) 49, 518, 769, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
AseI ATTAAT 1 cut(s) 1164
AsiGI ACCGGT 1 cut(s) 10
Asp700I GAANNNNTTC 2 cut(s) 252, 882
AspA2I CCTAGG 1 cut(s) 70
AspS9I GGNCC 6 cut(s) 31, 389, 505, 1133, 1361, 1733
AsuNHI GCTAGC 1 cut(s) 1726
AvaII GGWCC 4 cut(s) 31, 389, 505, 1361
AvrII CCTAGG 1 cut(s) 70
BalI TGGCCA 1 cut(s) 1335
BanI GGYRCC 2 cut(s) 13, 1235
BauI CACGAG 2 cut(s) 831, 1010
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 1033, 1750
BccI CCATC 4 cut(s) 1124, 1226, 1325, 1691
BceAI ACGGC 2 cut(s) 279, 311
BcoDI GTCTC 2 cut(s) 404, 455
BfaI CTAG 5 cut(s) 71, 764, 960, 1127, 1727
BfmI CTRYAG 1 cut(s) 1599
BfrI CTTAAG 1 cut(s) 776
BlnI CCTAGG 1 cut(s) 70
Bme18I GGWCC 4 cut(s) 31, 389, 505, 1361
BmgBI CACGTC 1 cut(s) 1297
BmgT120I GGNCC 6 cut(s) 31, 389, 505, 1133, 1361, 1733
BmiI GGNNCC 6 cut(s) 15, 32, 506, 1237, 1363, 1759
BmsI GCATC 7 cut(s) 313, 610, 726, 784, 920, 988, 1171
BmtI GCTAGC 1 cut(s) 1730
BpiI GAAGAC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
Bpu10I CCTNAGC 1 cut(s) 1605
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 871, 1379
Bse118I RCCGGY 2 cut(s) 10, 16
Bse1I ACTGG 2 cut(s) 43, 513
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 3 cut(s) 328, 670, 1509
BseLI CCNNNNNNNGG 2 cut(s) 871, 1379
BseMII CTCAG 1 cut(s) 1619
BseNI ACTGG 2 cut(s) 43, 513
BseRI GAGGAG 3 cut(s) 1108, 1599, 1711
BseYI CCCAGC 1 cut(s) 1730
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 5 cut(s) 294, 1134, 1335, 1682, 1735
BshNI GGYRCC 2 cut(s) 13, 1235
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 1033, 1750
BsiSI CCGG 2 cut(s) 11, 17
BslFI GGGAC 4 cut(s) 44, 320, 518, 1347
BslI CCNNNNNNNGG 2 cut(s) 871, 1379
BsmAI GTCTC 2 cut(s) 404, 455
BsmFI GGGAC 4 cut(s) 44, 320, 518, 1347
BsmI GAATGC 2 cut(s) 1600, 1681
BsnI GGCC 5 cut(s) 294, 1134, 1335, 1682, 1735
Bsp1286I GDGCHC 2 cut(s) 1033, 1750
Bsp143I GATC 2 cut(s) 421, 1369
BspACI CCGC 8 cut(s) 20, 650, 1159, 1303, 1356, 1411, 1575, 1679
BspANI GGCC 5 cut(s) 294, 1134, 1335, 1682, 1735
BspCNI CTCAG 1 cut(s) 1618
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 6 cut(s) 15, 32, 506, 1237, 1363, 1759
BspMAI CTGCAG 1 cut(s) 1603
BspOI GCTAGC 1 cut(s) 1730
BspPI GGATC 2 cut(s) 429, 1364
BspQI GCTCTTC 1 cut(s) 888
BspT107I GGYRCC 2 cut(s) 13, 1235
BspTI CTTAAG 1 cut(s) 776
BsrFI RCCGGY 2 cut(s) 10, 16
BsrI ACTGG 2 cut(s) 43, 513
BssAI RCCGGY 2 cut(s) 10, 16
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 421, 1369
BssSI CACGAG 2 cut(s) 831, 1010
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 2 cut(s) 831, 1010
Bst4CI ACNGT 1 cut(s) 1518
Bst6I CTCTTC 3 cut(s) 552, 888, 1065
BstAFI CTTAAG 1 cut(s) 776
BstDEI CTNAG 5 cut(s) 546, 569, 614, 798, 1605
BstF5I GGATG 3 cut(s) 328, 670, 1509
BstFNI CGCG 1 cut(s) 459
BstKTI GATC 2 cut(s) 424, 1372
BstMAI GTCTC 2 cut(s) 404, 455
BstMBI GATC 2 cut(s) 421, 1369
BstNSI RCATGY 3 cut(s) 599, 1203, 1487
BstSFI CTRYAG 1 cut(s) 1599
BstUI CGCG 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 1454
BsuRI GGCC 5 cut(s) 294, 1134, 1335, 1682, 1735
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 1297
BtsCI GGATG 3 cut(s) 328, 670, 1509
BtsIMutI CAGTG 1 cut(s) 1346
Cfr10I RCCGGY 2 cut(s) 10, 16
Cfr13I GGNCC 6 cut(s) 31, 389, 505, 1133, 1361, 1733
Csp6I GTAC 1 cut(s) 431
CspAI ACCGGT 1 cut(s) 10
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 5 cut(s) 546, 569, 614, 798, 1605
DpnI GATC 2 cut(s) 423, 1371
DpnII GATC 2 cut(s) 421, 1369
EaeI YGGCCR 2 cut(s) 1333, 1680
Eam1104I CTCTTC 3 cut(s) 552, 888, 1065
EarI CTCTTC 3 cut(s) 552, 888, 1065
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 4 cut(s) 31, 389, 505, 1361
Eco57I CTGAAG 7 cut(s) 117, 576, 771, 771, 869, 1052, 1158
EcoO109I RGGNCCY 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 70
FalI AAGNNNNNCTT 6 cut(s) 867, 899, 911, 943, 1082, 1114
FaqI GGGAC 4 cut(s) 44, 320, 518, 1347
FauI CCCGC 1 cut(s) 643
FauNDI CATATG 1 cut(s) 1120
FokI GGATG 3 cut(s) 335, 677, 1516
FspBI CTAG 5 cut(s) 71, 764, 960, 1127, 1727
GsaI CCCAGC 1 cut(s) 1734
HaeIII GGCC 5 cut(s) 294, 1134, 1335, 1682, 1735
HapII CCGG 2 cut(s) 11, 17
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 3 cut(s) 99, 611, 1140
HinfI GANTC 7 cut(s) 170, 248, 629, 715, 966, 1475, 1658
HpaII CCGG 2 cut(s) 11, 17
Hpy166II GTNNAC 1 cut(s) 714
Hpy188III TCNNGA 9 cut(s) 89, 374, 503, 523, 626, 865, 887, 953, 1257
Hpy8I GTNNAC 1 cut(s) 714
HpyAV CCTTC 6 cut(s) 266, 436, 520, 719, 1076, 1494
HpyCH4III ACNGT 1 cut(s) 1518
HpyCH4IV ACGT 2 cut(s) 490, 1296
HpyF3I CTNAG 5 cut(s) 546, 569, 614, 798, 1605
HpySE526I ACGT 2 cut(s) 490, 1296
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 421, 1369
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 4 cut(s) 889, 1095, 1246, 1259
LweI GCATC 7 cut(s) 313, 610, 726, 784, 920, 988, 1171
MaeI CTAG 5 cut(s) 71, 764, 960, 1127, 1727
MaeII ACGT 2 cut(s) 490, 1296
MaeIII GTNAC 2 cut(s) 184, 349
MalI GATC 2 cut(s) 423, 1371
MboI GATC 2 cut(s) 421, 1369
MfeI CAATTG 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 1033, 1750
MlsI TGGCCA 1 cut(s) 1335
MluNI TGGCCA 1 cut(s) 1335
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 2 cut(s) 249, 456
Mox20I TGGCCA 1 cut(s) 1335
Mph1103I ATGCAT 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 16
MroXI GAANNNNTTC 2 cut(s) 252, 882
MscI TGGCCA 1 cut(s) 1335
MseI TTAA 6 cut(s) 26, 635, 777, 1164, 1461, 1512
MslI CAYNNNNRTG 2 cut(s) 321, 1001
Msp20I TGGCCA 1 cut(s) 1335
MspA1I CMGCKG 4 cut(s) 344, 860, 1358, 1570
MspCI CTTAAG 1 cut(s) 776
MspI CCGG 2 cut(s) 11, 17
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 2 cut(s) 1600, 1681
MvnI CGCG 1 cut(s) 459
NaeI GCCGGC 1 cut(s) 18
NdeI CATATG 1 cut(s) 1120
NdeII GATC 2 cut(s) 421, 1369
NgoMIV GCCGGC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 1726
NlaIV GGNNCC 6 cut(s) 15, 32, 506, 1237, 1363, 1759
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 3 cut(s) 599, 1203, 1487
PciI ACATGT 1 cut(s) 1483
PciSI GCTCTTC 1 cut(s) 888
PctI GAATGC 2 cut(s) 1600, 1681
PdiI GCCGGC 1 cut(s) 18
PdmI GAANNNNTTC 2 cut(s) 252, 882
PfeI GAWTC 6 cut(s) 170, 248, 629, 966, 1475, 1658
PflMI CCANNNNNTGG 1 cut(s) 871
PinAI ACCGGT 1 cut(s) 10
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 505
PscI ACATGT 1 cut(s) 1483
PshBI ATTAAT 1 cut(s) 1164
Psp5II RGGWCCY 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 1730
PspN4I GGNNCC 6 cut(s) 15, 32, 506, 1237, 1363, 1759
PspPI GGNCC 6 cut(s) 31, 389, 505, 1133, 1361, 1733
PspPPI RGGWCCY 1 cut(s) 505
PstI CTGCAG 1 cut(s) 1603
PvuII CAGCTG 3 cut(s) 344, 860, 1570
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 321, 1001
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 6 cut(s) 26, 635, 777, 1164, 1461, 1512
Sau3AI GATC 2 cut(s) 421, 1369
Sau96I GGNCC 6 cut(s) 31, 389, 505, 1133, 1361, 1733
SchI GAGTC 1 cut(s) 709
SduI GDGCHC 2 cut(s) 1033, 1750
SfaNI GCATC 7 cut(s) 313, 610, 726, 784, 920, 988, 1171
SfcI CTRYAG 1 cut(s) 1599
SinI GGWCC 4 cut(s) 31, 389, 505, 1361
SmiMI CAYNNNNRTG 2 cut(s) 321, 1001
SmlI CTYRAG 2 cut(s) 361, 776
SmoI CTYRAG 2 cut(s) 361, 776
SsiI CCGC 8 cut(s) 20, 650, 1159, 1303, 1356, 1411, 1575, 1679
SspMI CTAG 5 cut(s) 71, 764, 960, 1127, 1727
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 1518
TaiI ACGT 2 cut(s) 493, 1299
TaqI TCGA 4 cut(s) 367, 522, 1018, 1710
TauI GCSGC 1 cut(s) 1682
TfiI GAWTC 6 cut(s) 170, 248, 629, 966, 1475, 1658
Tru1I TTAA 6 cut(s) 26, 635, 777, 1164, 1461, 1512
Tru9I TTAA 6 cut(s) 26, 635, 777, 1164, 1461, 1512
TscAI CASTG 1 cut(s) 1353
TspDTI ATGAA 9 cut(s) 33, 49, 455, 828, 956, 1137, 1140, 1466, 1481
TspRI CASTG 1 cut(s) 1353
Van91I CCANNNNNTGG 1 cut(s) 871
Vha464I CTTAAG 1 cut(s) 776
VpaK11BI GGWCC 4 cut(s) 31, 389, 505, 1361
VspI ATTAAT 1 cut(s) 1164
XapI RAATTY 4 cut(s) 49, 518, 769, 1054
XceI RCATGY 3 cut(s) 599, 1203, 1487
XmaJI CCTAGG 1 cut(s) 70
XmnI GAANNNNTTC 2 cut(s) 252, 882
XspI CTAG 5 cut(s) 71, 764, 960, 1127, 1727
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.