Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002290.1

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

4383 .. 16529

Gene Structure 12147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6285 bp

atgcgatcgtcgccgagtggtggtaaacagtgggggcagaggaatcggaagaagcacaagaggcttgatgctattagtgaaaccgtgtataagaggaatcatcttcaggctaatgatggggcggggccgggtcccgggagcggtgaatcggagcttcggaggagctccagggcaaattcttcagttcaagaaattgttgttgtgatgcgatcgtcgccgagtggtggtaaacagtgggggcagaggaatcggaagaagcacaagaggcttgatgctattagtgaaaccgtgtataagaggaatcatcttcaggctaatgatggggcggggccgggtcccgggagcggtgaatcggagcttcggaggagctccagggcacgccgggcccccgttgtgcttgatttgtccccggggccgccgaagaagaggaggaggcttgaaattgttgttgtgatgcgatcgtcgccgagtggtggtaaacagtgggggcagaggaatcggaagaagcacaagaggcttgatgctattagtgaaaccgtgtataagaggaatcatcttcaggctaatgatggggcggggccgggtcccgggagcggtgaatcggagcttcggaggagctccagggcacgccgggcccccgttgtgcttgatttgtccccggggccgccgaagaagaggaggaggcttggtaagaatgggagattgagtggggggaagaatgtgaaggaggaggaggaggaggaggaggaggaggtggagggagggtggaagtcgaggttgagatcgaggagggggcattcggggtttgtgaaagggaagaggaagctatttgaagatgtgagtggaggtagtagtggagggaaggtagtggggagtgagctggatgatgagaatgaggaagggttggaaggtgggaggccgaaagttgtgaagtcgaagagaccagggagggaagaatgtgaaggaggaggaggaggaggaggaggaggaggtggagggagggtggaagtcgaggttgagatcgaggagggggcattcggggtagtggggagtgagctggatgatgagaatgaggaagggttggaaggtgggaggccgaaggttgtgaagtcgaagagaccagggagggttagagcaacgcatggttcggagcatgaagagaatgagttgcttgaagttaaggaggaagttgtgggggaagaagaggaagtgatgagggaggacatggataatttgatgcagttggattgcgaagatgatggtggaattgagagggaaactgtggaaggtgattccacaaagataattgaggcggtggaggatttacagttagaggaggagtgcactggcaatgagaaagtggaagctgctgaaactgcaggtggtggggaaaccatggaacaagttgatgaacagttggagcaatcagttgatgtgattgaagaagaaaaagatgatgtgattgaagaagaaaaagatgataaacagatggaacaagagcaagtaccgtgtgttgttgaaggagaagatcaaagtgaggccatagaagctgttggagtccccagagatgaagcggaagttgaaggttgtcatgatgggaaggattcgcatttgactgagcatgatggaaaacttccaatagaagtgaatactgtgaaggtggacatgtccaaagatggaaagtcacagattaaagagggcagacgatgtggtttgtgtgggggagggactgatggtatgcctccaaaaattttagctcaggatacagttgacattgagaatgaagcgtatagtggctcttcagcctctgagaaatttgactataacatatgggatggttttggtgatgaacctggctggcttggacgtctcttgggtccaataaatgatcgttatggcattgctggaacatgggttcatcaacactgtgctgtatggagtccagaggtttactttgcgggtgtaggatgcttaaaaaatataagggccgctctgtgcagagggagagcgttaaaatgcacccgctgtggaaggccaggagcaactattggatgccgtgttgatcggtgttcaagaacttaccacttgccttgtgcacgagctatgaattgcgtatttgatcatcgcaagtttcttattgcctgtactggtcataggaaactcttccagcctcttggttatcagtacttggcccgcaaaaagaaattgaaggttaagaaaatgaagttcgaaatcagaaagctatcaaatgatgctttgcgaaaggatattgaggcagaagaaaagtggttggagaattgtggcgatgatgaagagtttttgaaacgtgaaagcaagaggctacatcgagatttggtgagaattgcacctgtgtacattggaggctccgactctgagagtggcaaactgtttcagggttgggaatctgttgcaggtcttcaaaatgtcattagatgtatgaaggaagttgtcatattacctcttctatatccagagttctttgatagtctcagcctaacacctcctagaggtgttctattgcatgggtatcctggaacaggtaaaactcttgttgtgcgggcattaataggtgcatgtgcacgtggtgatagacgaatagcatattttgctcgtaaaggtgctgattgtttaggaaaatatgttggtgatgctgagcgccagctaagactcttgtttcaggttgctgagagatgtcaaccttctataatattctttgatgagattgatgggttggcaccttccagaactaggcaacaagatcagacacatagttcagttgtgtcaacactgcttgctttaatggatggtttgaaatctcgaggttctgttgtagtgataggtgctacaaatcgtcctgatgctgttgatccagcactaaggcggcctggaagatttgatagggaaatctattttccactaccgtcagaagaggacagagcttccattctttctgttcatactcaaaaatggcccaaaccagtcagtggatccgtgcttaagtcgattgcaagaggaactgctggatttgctggtgcagatctgcaggcactttgcactcaagcagccataatttctttgaaaaggaatttccctttgcaagaagttttgtctgctgctggaaagaaagattccgagtccaaacgcctccctctacctgcctttctagtggaggacagggattggctggaggctctgacatgttctccacctccctgctctcgtagggaagtaggaatagctgctaatgaagtaatatgctctcctcttccaacccaccttatcccatgtcttctgcaaccattatctaccatgctcgtatccctttatcttgatgaacggctctggttgccaactcctctgagaagagctgcaacaatgattgaaagtgtggttgtttctgccttgaataggaaaaatatgctcagtgatcgctggtggtcccatattgatgttttacttcaggaagcagatgttgcaaaggacatagagagaaagcttttgcatgctggaatcttacatggagatactgctcttgctgattctgatgtttgcaatgatgatgttgatgacggaattttgaattttgagccttctgttaaacatcatggtggtactcgcccaagtttgttgcaaaacacatttgttgcctcaacgtacaaaccgggatttcggatattgattgctggaaatcccagatctggccaaaggcatcttgcttcctgccttcttcactgttttgttgggaatgtagaaatccagaaggttgatttggcaacagttttgctagaaggacacggagatatggcgcaagggataacacaaatattaaagaaatgtgccagcatggggtcgtgtatagttttcatgccaagaattgatttgtgggcagtggagacacctaatcaagtaacagaagacagtgatgcagatttatcaaaccatcaatgtcctgaaaatgaaaagcatcaacatcctgagaatgaaaagtcatattttgcgcgtggtctggaggaaagtgtgtccttatcacagcaatgcaaatcagaagaaatgttagagtgccaagatgatgttgctcagagtgcttcacatgcttggaacttgtttgtggagcaggtggagtctctaagtgtctctgcatccttaatgattctggctacatcagaagttccatgtccagtgcttccagttagaataaggcagttctttaagagtgacattttaaatggccatcggtcagttcctgtgaagcatacagttcccaggttttctgtgcaggttgatggaaatttcaaccatgatctggtgatcaatctatcttcagcagagttatcaagggatcttgttcaacagattgttctgttagttcatcaaacttctcacattcatacaacttcatgcaaggagagaggctttcatggtataaatggtcagtccaagatggttgattacagtgcagatcatggatcagctgatggaaacaacaatttaactctacctcctgttgattctcttcttaaagcttctgcaccacctaacaatataactggaaatgggaaatcaagccttctgctagcaatatcttcatttggctatcagatactgcgatatcctcattttgctgaactttgttggttcacttcaaaacttaaagaaggtccttctgcagacataagtggaccttggaagggttggccattcaattcctgtatagttcgtcctaacagctcgctagaaatggtaactgtggcaaagaatattaaaagcaaagaaaacttgggcctagttagaggcctgattgctgttggtttatcggcatatagaggtctctacacatctctcagagaagtctcttctgaggtacggaaggttcttgagattctagttgcgcagatcaatgcaaaagttcaagccgggaaagatagatatcaatatgttcgccttttgtcacaagtggcttatctggaagatgtggtcaatagctgggcatacaccttgcagagtttagagcaggatgctccattggcagatgctaagcttaccgctccgagacttccagacgataaccatatggatgatcaagttcaaagcgaggattccaagccaaaggttacaagcaaatgctccagtgagcacgaagtgctggaaattgtccctgaagggtttgatgctgcaaaagttgtcagtattgacttgaatgaacaagttgctgatttgggttgttctgaggttagacttgcaagtttagattgttctggacagaagattgtcccatctgattctaccctggataattgtcttaaagattcagatgaagttttgaatgaccagaatgggacaaaccctaaaccccacgagtcagaaaatgacaaacaccatacagttgttgcaggagattctgaatctttgaaatgtccaaatggatttgaatgcactgaatctgttgctattcccgaggacagtccgacttctgatatatttggcagcattaagctctctagttctttgaccagttacaacaaccttaatggtttgtccttgacagaggctggtagtagacataatgatggtaaggctgatgctcatgaggttactgcagacgtcaactttccaagcaccaccagtaaaaccaatctgcctgagtgcatagataagcctgatgcaaacttctcaagtaaaaccaatgctgatgtgcataatgttgatgtcaacttccctcccaaaatcagtccctctacgaagtctgagtttgtatgcgtatatcattgttgctctgaatgcctagatacccttcacagtttgacacagaaaattcttatcgaggagtggcgatcaaatgggagccaatggacagtggaggatgttcatgatattgtggcatcactatctgtggatcttctttcagcggttagaagaattcatgtttccggaggtttcaacagttcatttggtgataaaaggagacacagaaatactgaaacatatgagtggccggaatcaggaacatgtgattgcaatatctcagaaaataagattctttcacctgctgaatgtagatgccacaccagcagggagagctttactcaaaagacaaatgcttccgcaaatactcatctcaggtttgattcaaaatttgtttttcgagatggtttgctggttcatatgcatccagataaagatgtttctttccactgtaaattcgagacgctctgcctctgttcacttatagagttgatagtaatgaccaagtcaccttttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

2094

Amino Acids

230.64

Weight (kDa)

5.84

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	636 - 710	6.7e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	640 - 718	2.3e-10	PHD-like zinc-binding domain
AAA	PF00004	845 - 980	1.5e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	1006 - 1038	6.4e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	1370, 4126, 6073
AatII	GACGTC	2 cut(s)	1870, 5625
Acc16I	TGCGCA	1 cut(s)	4911
Acc36I	ACCTGC	6 cut(s)	1370, 2423, 3184, 4126, 4288, 6073
AccB1I	GGYRCC	1 cut(s)	2755
AccB7I	CCANNNNNTGG	2 cut(s)	3005, 4324
AccBSI	CCGCTC	5 cut(s)	141, 345, 594, 1991, 5066
AccI	GTMKAC	1 cut(s)	5578
AccII	CGCG	1 cut(s)	4021
AccIII	TCCGGA	1 cut(s)	5948
AclWI	GGATC	6 cut(s)	2882, 3003, 3016, 4368, 4495, 5922
AcoI	YGGCCR	4 cut(s)	3721, 4249, 4715, 6011
AcuI	CTGAAG	8 cut(s)	89, 165, 293, 542, 1785, 3464, 4326, 5199
AcvI	CACGTG	1 cut(s)	2603
AcyI	GRCGYC	2 cut(s)	1867, 5622
AdeI	CACNNNGTG	2 cut(s)	2606, 5161
AfaI	GTAC	7 cut(s)	1506, 2146, 2186, 2375, 3634, 3677, 4884
AflII	CTTAAG	1 cut(s)	3017
AflIII	ACRYGT	3 cut(s)	1665, 3218, 6026
AjuI	GAANNNNNNNTTGG	2 cut(s)	3773, 3805
AloI	GAACNNNNNNTCC	2 cut(s)	1899, 1931
Alw21I	GWGCWC	7 cut(s)	167, 371, 620, 1346, 2098, 2602, 5157
Alw44I	GTGCAC	3 cut(s)	1342, 2094, 2598
AlwI	GGATC	6 cut(s)	2882, 3003, 3016, 4368, 4495, 5922
AlwNI	CAGNNNCTG	4 cut(s)	1808, 4265, 4624, 5570
Ama87I	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
Aor13HI	TCCGGA	1 cut(s)	5948
ApaI	GGGCCC	2 cut(s)	388, 637
ApaLI	GTGCAC	3 cut(s)	1342, 2094, 2598
ApeKI	GCWGC	7 cut(s)	1367, 3083, 3134, 3260, 3389, 5192, 5505
AseI	ATTAAT	1 cut(s)	2585
Asp700I	GAANNNNTTC	1 cut(s)	2162
AspLEI	GCGC	4 cut(s)	2679, 3829, 4021, 4912
AsuII	TTCGAA	1 cut(s)	2229
AsuNHI	GCTAGC	1 cut(s)	4594
AvaI	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
AvaII	GGWCC	7 cut(s)	131, 335, 584, 1877, 3459, 4679, 4700
BaeGI	GKGCMC	7 cut(s)	379, 388, 628, 637, 1346, 2098, 2602
BalI	TGGCCA	3 cut(s)	3723, 4251, 4717
BamHI	GGATCC	1 cut(s)	3008
BanI	GGYRCC	1 cut(s)	2755
BanII	GRGCYC	5 cut(s)	167, 371, 388, 620, 637
BauI	CACGAG	2 cut(s)	2097, 5375
BbrPI	CACGTG	1 cut(s)	2603
BbsI	GAAGAC	3 cut(s)	2429, 3302, 3942
Bbv12I	GWGCWC	7 cut(s)	167, 371, 620, 1346, 2098, 2602, 5157
BbvI	GCAGC	7 cut(s)	1354, 3095, 3121, 3247, 3376, 5179, 5517
BceAI	ACGGC	2 cut(s)	2040, 3374
BcgI	CGANNNNNNTGC	6 cut(s)	26, 60, 230, 264, 479, 513
BciVI	GTATCC	3 cut(s)	1756, 2559, 3349
BclI	TGATCA	3 cut(s)	2119, 4329, 5098
BfmI	CTRYAG	4 cut(s)	1377, 3062, 4686, 5616
BfoI	RGCGCY	1 cut(s)	2680
BfrI	CTTAAG	1 cut(s)	3017
BfuAI	ACCTGC	6 cut(s)	1370, 2423, 3184, 4126, 4288, 6073
BfuI	GTATCC	3 cut(s)	1756, 2559, 3349
BglII	AGATCT	2 cut(s)	3058, 3716
BlpI	GCTNAGC	2 cut(s)	2673, 5055
BmcAI	AGTACT	1 cut(s)	2186
Bme18I	GGWCC	7 cut(s)	131, 335, 584, 1877, 3459, 4679, 4700
BmeT110I	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
BmtI	GCTAGC	1 cut(s)	4598
BpiI	GAAGAC	3 cut(s)	2429, 3302, 3942
BplI	GAGNNNNNCTC	2 cut(s)	6088, 6120
BpmI	CTGGAG	6 cut(s)	151, 355, 604, 3227, 4049, 5131
Bpu10I	CCTNAGC	1 cut(s)	1758
Bpu1102I	GCTNAGC	2 cut(s)	2673, 5055
Bpu14I	TTCGAA	1 cut(s)	2229
BpuEI	CTTGAG	3 cut(s)	3063, 4916, 5677
BsaAI	YACGTR	1 cut(s)	2603
BsaBI	GATNNNNATC	1 cut(s)	4947
BsaHI	GRCGYC	2 cut(s)	1867, 5622
BsaI	GGTCTC	3 cut(s)	934, 1111, 4853
BsaWI	WCCGGW	1 cut(s)	5948
Bse1I	ACTGG	9 cut(s)	1351, 2152, 2999, 4199, 4208, 4573, 5148, 5532, 5643
Bse3DI	GCAATG	4 cut(s)	1357, 1899, 3580, 4061
Bse8I	GATNNNNATC	1 cut(s)	4947
BseAI	TCCGGA	1 cut(s)	5948
BseJI	GATNNNNATC	1 cut(s)	4947
BseMI	GCAATG	4 cut(s)	1357, 1899, 3580, 4061
BseNI	ACTGG	9 cut(s)	1351, 2152, 2999, 4199, 4208, 4573, 5148, 5532, 5643
BseSI	GKGCMC	7 cut(s)	379, 388, 628, 637, 1346, 2098, 2602
BseXI	GCAGC	7 cut(s)	1354, 3095, 3121, 3247, 3376, 5179, 5517
BseYI	CCCAGC	1 cut(s)	5004
BsgI	GTGCAG	5 cut(s)	2017, 3075, 4316, 4497, 4533
Bsh1236I	CGCG	1 cut(s)	4021
Bsh1285I	CGRYCG	3 cut(s)	8, 212, 461
BshNI	GGYRCC	1 cut(s)	2755
BsiEI	CGRYCG	3 cut(s)	8, 212, 461
BsiHKAI	GWGCWC	7 cut(s)	167, 371, 620, 1346, 2098, 2602, 5157
BsiHKCI	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
BsmBI	CGTCTC	2 cut(s)	1874, 6218
BsmI	GAATGC	4 cut(s)	796, 1034, 5456, 5804
Bso31I	GGTCTC	3 cut(s)	934, 1111, 4853
BsoBI	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
Bsp119I	TTCGAA	1 cut(s)	2229
Bsp120I	GGGCCC	2 cut(s)	384, 633
Bsp13I	TCCGGA	1 cut(s)	5948
Bsp1407I	TGTACA	1 cut(s)	2373
Bsp1720I	GCTNAGC	2 cut(s)	2673, 5055
Bsp19I	CCATGG	1 cut(s)	1395
BspEI	TCCGGA	1 cut(s)	5948
BspFNI	CGCG	1 cut(s)	4021
BspHI	TCATGA	3 cut(s)	1591, 5605, 5887
BspMAI	CTGCAG	4 cut(s)	1381, 3066, 4690, 5620
BspMI	ACCTGC	6 cut(s)	1370, 2423, 3184, 4126, 4288, 6073
BspOI	GCTAGC	1 cut(s)	4598
BspPI	GGATC	6 cut(s)	2882, 3003, 3016, 4368, 4495, 5922
BspQI	GCTCTTC	2 cut(s)	1804, 3379
BspT104I	TTCGAA	1 cut(s)	2229
BspT107I	GGYRCC	1 cut(s)	2755
BspTI	CTTAAG	1 cut(s)	3017
BspTNI	GGTCTC	3 cut(s)	934, 1111, 4853
BsrBI	CCGCTC	5 cut(s)	141, 345, 594, 1991, 5066
BsrDI	GCAATG	4 cut(s)	1357, 1899, 3580, 4061
BsrGI	TGTACA	1 cut(s)	2373
BsrI	ACTGG	9 cut(s)	1351, 2152, 2999, 4199, 4208, 4573, 5148, 5532, 5643
BssNI	GRCGYC	2 cut(s)	1867, 5622
BssSI	CACGAG	2 cut(s)	2097, 5375
BssT1I	CCWWGG	2 cut(s)	1395, 4703
Bst2BI	CACGAG	2 cut(s)	2097, 5375
BstACI	GRCGYC	2 cut(s)	1867, 5622
BstAFI	CTTAAG	1 cut(s)	3017
BstAPI	GCANNNNNTGC	3 cut(s)	2627, 3494, 5161
BstAUI	TGTACA	1 cut(s)	2373
BstBAI	YACGTR	1 cut(s)	2603
BstBI	TTCGAA	1 cut(s)	2229
BstDSI	CCRYGG	1 cut(s)	1395
BstENI	CCTNNNNNAGG	3 cut(s)	2526, 2556, 3427
BstFNI	CGCG	1 cut(s)	4021
BstH2I	RGCGCY	1 cut(s)	2680
BstHHI	GCGC	4 cut(s)	2679, 3829, 4021, 4912
BstMCI	CGRYCG	3 cut(s)	8, 212, 461
BstNSI	RCATGY	6 cut(s)	1669, 2598, 3222, 3527, 4115, 6030
BstSFI	CTRYAG	4 cut(s)	1377, 3062, 4686, 5616
BstSLI	GKGCMC	7 cut(s)	379, 388, 628, 637, 1346, 2098, 2602
BstUI	CGCG	1 cut(s)	4021
BstV1I	GCAGC	7 cut(s)	1354, 3095, 3121, 3247, 3376, 5179, 5517
BstV2I	GAAGAC	3 cut(s)	2429, 3302, 3942
BstX2I	RGATCY	5 cut(s)	3008, 3058, 3716, 4360, 5914
BstXI	CCANNNNNNTGG	1 cut(s)	2174
BstYI	RGATCY	5 cut(s)	3008, 3058, 3716, 4360, 5914
BsuI	GTATCC	3 cut(s)	1756, 2559, 3349
BtgI	CCRYGG	1 cut(s)	1395
BtgZI	GCGATG	2 cut(s)	2108, 2319
BtsI	GCAGTG	2 cut(s)	2807, 3915
BveI	ACCTGC	6 cut(s)	1370, 2423, 3184, 4126, 4288, 6073
CaiI	CAGNNNCTG	4 cut(s)	1808, 4265, 4624, 5570
CciI	TCATGA	3 cut(s)	1591, 5605, 5887
CfoI	GCGC	4 cut(s)	2679, 3829, 4021, 4912
Cfr9I	CCCGGG	5 cut(s)	134, 338, 409, 587, 658
CseI	GACGC	1 cut(s)	6235
Csp6I	GTAC	7 cut(s)	1505, 2145, 2185, 2374, 3633, 3676, 4883
CspCI	CAANNNNNGTGG	2 cut(s)	2072, 2107
CviQI	GTAC	7 cut(s)	1505, 2145, 2185, 2374, 3633, 3676, 4883
DraI	TTTAAA	1 cut(s)	4245
DraIII	CACNNNGTG	2 cut(s)	2606, 5161
EaeI	YGGCCR	4 cut(s)	3721, 4249, 4715, 6011
Ecl136II	GAGCTC	3 cut(s)	165, 369, 618
Eco130I	CCWWGG	2 cut(s)	1395, 4703
Eco147I	AGGCCT	1 cut(s)	4815
Eco24I	GRGCYC	5 cut(s)	167, 371, 388, 620, 637
Eco31I	GGTCTC	3 cut(s)	934, 1111, 4853
Eco32I	GATATC	2 cut(s)	4631, 4949
Eco47I	GGWCC	7 cut(s)	131, 335, 584, 1877, 3459, 4679, 4700
Eco53kI	GAGCTC	3 cut(s)	165, 369, 618
Eco57I	CTGAAG	8 cut(s)	89, 165, 293, 542, 1785, 3464, 4326, 5199
Eco72I	CACGTG	1 cut(s)	2603
Eco88I	CYCGRG	7 cut(s)	134, 338, 409, 587, 658, 2838, 5474
EcoICRI	GAGCTC	3 cut(s)	165, 369, 618
EcoNI	CCTNNNNNAGG	3 cut(s)	2526, 2556, 3427
EcoO109I	RGGNCCY	6 cut(s)	131, 335, 385, 584, 634, 4679
EcoRI	GAATTC	1 cut(s)	5937
EcoRV	GATATC	2 cut(s)	4631, 4949
EcoT14I	CCWWGG	2 cut(s)	1395, 4703
EcoT22I	ATGCAT	1 cut(s)	6189
EcoT38I	GRGCYC	5 cut(s)	167, 371, 388, 620, 637
ErhI	CCWWGG	2 cut(s)	1395, 4703
Esp3I	CGTCTC	2 cut(s)	1874, 6218
FalI	AAGNNNNNCTT	2 cut(s)	4687, 4719
FauI	CCCGC	7 cut(s)	115, 319, 568, 1951, 2030, 2201, 2571
FauNDI	CATATG	4 cut(s)	1829, 5091, 6004, 6183
FbaI	TGATCA	3 cut(s)	2119, 4329, 5098
FblI	GTMKAC	1 cut(s)	5578
FriOI	GRGCYC	5 cut(s)	167, 371, 388, 620, 637
FspI	TGCGCA	1 cut(s)	4911
GlaI	GCGC	4 cut(s)	2678, 3828, 4020, 4911
GsaI	CCCAGC	1 cut(s)	5008
GsuI	CTGGAG	6 cut(s)	151, 355, 604, 3227, 4049, 5131
HaeII	RGCGCY	1 cut(s)	2680
HgaI	GACGC	1 cut(s)	6235
HhaI	GCGC	4 cut(s)	2679, 3829, 4021, 4912
Hin1I	GRCGYC	2 cut(s)	1867, 5622
Hin6I	GCGC	4 cut(s)	2677, 3827, 4019, 4910
HinP1I	GCGC	4 cut(s)	2677, 3827, 4019, 4910
HincII	GTYRAC	5 cut(s)	1771, 2717, 2805, 5626, 5731
HindII	GTYRAC	5 cut(s)	1771, 2717, 2805, 5626, 5731
HindIII	AAGCTT	3 cut(s)	3515, 4542, 5057
Hpy99I	CGWCG	3 cut(s)	13, 217, 466
HpyCH4IV	ACGT	5 cut(s)	1867, 2326, 2602, 3674, 5622
HpySE526I	ACGT	5 cut(s)	1867, 2326, 2602, 3674, 5622
Hsp92I	GRCGYC	2 cut(s)	1867, 5622
HspAI	GCGC	4 cut(s)	2677, 3827, 4019, 4910
KflI	GGGWCCC	3 cut(s)	131, 335, 584
Kpn2I	TCCGGA	1 cut(s)	5948
Ksp22I	TGATCA	3 cut(s)	2119, 4329, 5098
LguI	GCTCTTC	2 cut(s)	1804, 3379
Lsp1109I	GCAGC	7 cut(s)	1354, 3095, 3121, 3247, 3376, 5179, 5517
MaeII	ACGT	5 cut(s)	1867, 2326, 2602, 3674, 5622
MaeIII	GTNAC	9 cut(s)	1683, 3928, 4235, 4762, 4968, 5131, 5534, 5611, 6270
MbiI	CCGCTC	5 cut(s)	141, 345, 594, 1991, 5066
MflI	RGATCY	5 cut(s)	3008, 3058, 3716, 4360, 5914
MlsI	TGGCCA	3 cut(s)	3723, 4251, 4717
MluNI	TGGCCA	3 cut(s)	3723, 4251, 4717
MlyI	GAGTC	7 cut(s)	1566, 1948, 2384, 2682, 3164, 4151, 5387
MmeI	TCCRAC	9 cut(s)	885, 1062, 1224, 1398, 1534, 2271, 2412, 3314, 5510
Mox20I	TGGCCA	3 cut(s)	3723, 4251, 4717
Mph1103I	ATGCAT	1 cut(s)	6189
MroI	TCCGGA	1 cut(s)	5948
MroXI	GAANNNNTTC	1 cut(s)	2162
MscI	TGGCCA	3 cut(s)	3723, 4251, 4717
MslI	CAYNNNNRTG	6 cut(s)	3468, 3627, 4054, 5094, 5586, 6007
Msp20I	TGGCCA	3 cut(s)	3723, 4251, 4717
MspA1I	CMGCKG	3 cut(s)	2025, 4493, 5927
MspCI	CTTAAG	1 cut(s)	3017
Mva1269I	GAATGC	4 cut(s)	796, 1034, 5456, 5804
MvnI	CGCG	1 cut(s)	4021
NcoI	CCATGG	1 cut(s)	1395
NdeI	CATATG	4 cut(s)	1829, 5091, 6004, 6183
NheI	GCTAGC	1 cut(s)	4594
NmeAIII	GCCGAG	3 cut(s)	39, 243, 492
NmuCI	GTSAC	4 cut(s)	1683, 4235, 4968, 6270
NsbI	TGCGCA	1 cut(s)	4911
NsiI	ATGCAT	1 cut(s)	6189
NspI	RCATGY	6 cut(s)	1669, 2598, 3222, 3527, 4115, 6030
NspV	TTCGAA	1 cut(s)	2229
PaeI	GCATGC	1 cut(s)	3527
PaeR7I	CTCGAG	1 cut(s)	2838
PagI	TCATGA	3 cut(s)	1591, 5605, 5887
PaqCI	CACCTGC	3 cut(s)	1370, 4126, 6073
PceI	AGGCCT	1 cut(s)	4815
PciI	ACATGT	3 cut(s)	1665, 3218, 6026
PciSI	GCTCTTC	2 cut(s)	1804, 3379
PctI	GAATGC	4 cut(s)	796, 1034, 5456, 5804
PdmI	GAANNNNTTC	1 cut(s)	2162
PflFI	GACNNNGTC	1 cut(s)	6268
PflMI	CCANNNNNTGG	2 cut(s)	3005, 4324
PfoI	TCCNGGA	1 cut(s)	2551
Ple19I	CGATCG	3 cut(s)	8, 212, 461
PleI	GAGTC	7 cut(s)	1565, 1947, 2384, 2682, 3163, 4150, 5386
PmaCI	CACGTG	1 cut(s)	2603
PmlI	CACGTG	1 cut(s)	2603
PpsI	GAGTC	7 cut(s)	1565, 1947, 2384, 2682, 3163, 4150, 5386
Ppu21I	YACGTR	1 cut(s)	2603
PpuMI	RGGWCCY	4 cut(s)	131, 335, 584, 4679
PscI	ACATGT	3 cut(s)	1665, 3218, 6026
PshBI	ATTAAT	1 cut(s)	2585
Psp124BI	GAGCTC	3 cut(s)	167, 371, 620
Psp5II	RGGWCCY	4 cut(s)	131, 335, 584, 4679
PspCI	CACGTG	1 cut(s)	2603
PspFI	CCCAGC	1 cut(s)	5004
PspOMI	GGGCCC	2 cut(s)	384, 633
PspPPI	RGGWCCY	4 cut(s)	131, 335, 584, 4679
PsrI	GAACNNNNNNTAC	2 cut(s)	4875, 4907
PstI	CTGCAG	4 cut(s)	1381, 3066, 4690, 5620
PstNI	CAGNNNCTG	4 cut(s)	1808, 4265, 4624, 5570
PsuI	RGATCY	5 cut(s)	3008, 3058, 3716, 4360, 5914
PsyI	GACNNNGTC	1 cut(s)	6268
PvuI	CGATCG	3 cut(s)	8, 212, 461
PvuII	CAGCTG	1 cut(s)	4493
RsaI	GTAC	7 cut(s)	1506, 2146, 2186, 2375, 3634, 3677, 4884
RsaNI	GTAC	7 cut(s)	1505, 2145, 2185, 2374, 3633, 3676, 4883
RseI	CAYNNNNRTG	6 cut(s)	3468, 3627, 4054, 5094, 5586, 6007
SacI	GAGCTC	3 cut(s)	167, 371, 620
SapI	GCTCTTC	2 cut(s)	1804, 3379
ScaI	AGTACT	1 cut(s)	2186
SchI	GAGTC	7 cut(s)	1566, 1948, 2384, 2682, 3164, 4151, 5387
SfcI	CTRYAG	4 cut(s)	1377, 3062, 4686, 5616
Sfr274I	CTCGAG	1 cut(s)	2838
SfuI	TTCGAA	1 cut(s)	2229
SinI	GGWCC	7 cut(s)	131, 335, 584, 1877, 3459, 4679, 4700
SlaI	CTCGAG	1 cut(s)	2838
SmaI	CCCGGG	5 cut(s)	136, 340, 411, 589, 660
SmiMI	CAYNNNNRTG	6 cut(s)	3468, 3627, 4054, 5094, 5586, 6007
SmlI	CTYRAG	5 cut(s)	2838, 3017, 3078, 4895, 5692
SmoI	CTYRAG	5 cut(s)	2838, 3017, 3078, 4895, 5692
SphI	GCATGC	1 cut(s)	3527
SseBI	AGGCCT	1 cut(s)	4815
SspI	AATATT	3 cut(s)	2730, 3846, 4780
SstI	GAGCTC	3 cut(s)	167, 371, 620
StuI	AGGCCT	1 cut(s)	4815
StyI	CCWWGG	2 cut(s)	1395, 4703
TaiI	ACGT	5 cut(s)	1870, 2329, 2605, 3677, 5625
TaqII	GACCGA	1 cut(s)	4245
TatI	WGTACW	3 cut(s)	2144, 2184, 2373
TauI	GCSGC	4 cut(s)	418, 667, 1991, 2905
TseFI	GTSAC	4 cut(s)	1683, 4235, 4968, 6270
TseI	GCWGC	7 cut(s)	1367, 3083, 3134, 3260, 3389, 5192, 5505
Tsp45I	GTSAC	4 cut(s)	1683, 4235, 4968, 6270
TspGWI	ACGGA	4 cut(s)	3001, 3606, 3831, 4900
TspMI	CCCGGG	5 cut(s)	134, 338, 409, 587, 658
Tth111I	GACNNNGTC	1 cut(s)	6268
Van91I	CCANNNNNTGG	2 cut(s)	3005, 4324
Vha464I	CTTAAG	1 cut(s)	3017
VneI	GTGCAC	3 cut(s)	1342, 2094, 2598
VpaK11BI	GGWCC	7 cut(s)	131, 335, 584, 1877, 3459, 4679, 4700
VspI	ATTAAT	1 cut(s)	2585
XagI	CCTNNNNNAGG	3 cut(s)	2526, 2556, 3427
XceI	RCATGY	6 cut(s)	1669, 2598, 3222, 3527, 4115, 6030
XhoI	CTCGAG	1 cut(s)	2838
XmaI	CCCGGG	5 cut(s)	134, 338, 409, 587, 658
XmiI	GTMKAC	1 cut(s)	5578
XmnI	GAANNNNTTC	1 cut(s)	2162
ZraI	GACGTC	2 cut(s)	1868, 5623
ZrmI	AGTACT	1 cut(s)	2186
Zsp2I	ATGCAT	1 cut(s)	6189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.