Rmu_sc0002310.1_g000008

Protein of unknown function (DUF788)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002310.1
OG0004636
Physical Location & Seq
Forward (+)
31616 .. 38370
6755 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
atggagtccaggttattgggccacgaaattctcatggctactatgcttaatggggctgcaaatatagatggggcattgcttctgacgtctgagcatcttgctgctctgaaaattgtgccacttgttctgggatcaatatatgcaacatatatagcttcttcttcctcaattctagtagctgtaatatgctcaagtgatgatgatggagccgatcatgaactaagggttttgttgcggacgctgatacattctgctagggtaagtcctatagagaggcatagagagagagagatggcaaatcaaggtgcaaaaaagcgcaaggaagagaatgctcggcacatggcaaatatccgtctcctgattgtggcctgcaatgtgatgtatgtggtagtaaggatgctcatcttccattctacttttacctggaaaaactgggttgctttgctgctgacatctgtaatttattatattccctatcaacaactcgcccaaatggcaaatccttcttatgctgatgatggcgaacttctagatggcggatttgatatgaccactggtggagtgtgtggctatttacatgacgtaatctacattacaagcttcgtgcaagtcatgtccataatctctggaaaattttggtatacgtatctgctgataccaggttttggagcatacaaatcatttggtttcttcagaggatttatgtcccaaagttcagagggaggcttggaggatgaaaagacacgaaagaagagggaaaagatggaaaagaaggcttcaagagcccaattggctgcgttaacgcaagatctctcactttcactctcgtcggtgttgggcgatgttggaggggaattcgttgatggctgggttgctcaagatctgggctcagacacaatcgggggcttctgggatgtgatggattgctgggatcgagttggcgtgatgcattgtccaggtggttgttttggaccaggattggctttaggctggggaatggctacggacacggctgtgtttgttcgttttcatgttttggaggatgaagatgatggcgcggcggccttgacggtgagcgttggcggtgacgtggcaggtggcttttggctagaaagacacatgtgggctcaatgggttagggctttggtttaccctactctttgggcctgcatttggagtggctgggcttcttgggccttgcactggttggtgggcctcagctttgggctcactggcctagggtctcaagtgggctgtattacccttgtgctatggggctgggtttccatggccaatagcactgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF788

Protein Analysis

435

Amino Acids

47.81

Weight (kDa)

5.54

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 98 - 259 1.3e-55 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1085
AatII GACGTC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 1085
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 1 cut(s) 641
AccII CGCG 1 cut(s) 1058
AciI CCGC 5 cut(s) 235, 537, 1058, 1061, 1083
AclWI GGATC 2 cut(s) 139, 939
AcoI YGGCCR 1 cut(s) 1290
AcsI RAATTY 3 cut(s) 27, 632, 854
AcuI CTGAAG 1 cut(s) 676
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 4 cut(s) 364, 665, 1173, 1203
AflIII ACRYGT 1 cut(s) 1119
AgsI TTSAA 1 cut(s) 780
AjiI CACGTC 1 cut(s) 1090
AjnI CCWGG 5 cut(s) 8, 422, 658, 955, 973
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 4 cut(s) 155, 179, 600, 1221
AluI AGCT 4 cut(s) 155, 179, 600, 1221
Alw26I GTCTC 2 cut(s) 359, 1248
AlwI GGATC 2 cut(s) 139, 939
AoxI GGCC 8 cut(s) 19, 366, 1062, 1164, 1194, 1213, 1234, 1290
ApeKI GCWGC 4 cut(s) 56, 101, 445, 794
ApoI RAATTY 3 cut(s) 27, 632, 854
AspA2I CCTAGG 1 cut(s) 1237
AspLEI GCGC 2 cut(s) 318, 1058
AspS9I GGNCC 5 cut(s) 19, 971, 1164, 1194, 1213
AsuHPI GGTGA 2 cut(s) 1084, 1097
AvaII GGWCC 1 cut(s) 971
AvrII CCTAGG 1 cut(s) 1237
BalI TGGCCA 1 cut(s) 1292
BanII GRGCYC 4 cut(s) 787, 890, 1129, 1230
BbvCI CCTCAGC 1 cut(s) 1217
BbvI GCAGC 4 cut(s) 43, 88, 432, 781
BccI CCATC 9 cut(s) 62, 197, 286, 512, 527, 757, 857, 913, 1046
BceAI ACGGC 1 cut(s) 1026
BciT130I CCWGG 5 cut(s) 10, 424, 660, 957, 975
BcoDI GTCTC 2 cut(s) 359, 1248
BfaI CTAG 5 cut(s) 173, 255, 530, 1109, 1238
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 1085
BglI GCCNNNNNGGC 2 cut(s) 494, 791
BglII AGATCT 2 cut(s) 808, 880
BisI GCNGC 6 cut(s) 57, 102, 446, 795, 1059, 1062
BlnI CCTAGG 1 cut(s) 1237
BlsI GCNGC 6 cut(s) 58, 103, 447, 796, 1060, 1063
Bme1390I CCNGG 5 cut(s) 10, 424, 660, 957, 975
Bme18I GGWCC 1 cut(s) 971
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 5 cut(s) 19, 971, 1164, 1194, 1213
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 5 cut(s) 10, 424, 660, 957, 975
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 3 cut(s) 103, 387, 936
BmuI ACTGGG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 1217
BpuEI CTTGAG 3 cut(s) 175, 861, 1230
BsaAI YACGTR 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 1248
BsaJI CCNNGG 2 cut(s) 1237, 1287
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 364, 665, 1173, 1203
Bse1I ACTGG 4 cut(s) 437, 559, 1208, 1237
Bse3DI GCAATG 2 cut(s) 74, 379
Bse8I GATNNNNATC 1 cut(s) 401
BseBI CCWGG 5 cut(s) 10, 424, 660, 957, 975
BseDI CCNNGG 2 cut(s) 1237, 1287
BseGI GGATG 4 cut(s) 402, 739, 919, 1048
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 4 cut(s) 364, 665, 1173, 1203
BseMI GCAATG 2 cut(s) 74, 379
BseMII CTCAG 3 cut(s) 81, 903, 1231
BseNI ACTGG 4 cut(s) 437, 559, 1208, 1237
BseXI GCAGC 4 cut(s) 43, 88, 432, 781
BseYI CCCAGC 5 cut(s) 867, 927, 990, 1182, 1278
Bsh1236I CGCG 1 cut(s) 1058
BshFI GGCC 8 cut(s) 21, 368, 1064, 1166, 1196, 1215, 1236, 1292
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 4 cut(s) 364, 665, 1173, 1203
BsmAI GTCTC 2 cut(s) 359, 1248
BsmBI CGTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 691
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 8 cut(s) 21, 368, 1064, 1166, 1196, 1215, 1236, 1292
Bso31I GGTCTC 1 cut(s) 1248
Bsp1286I GDGCHC 4 cut(s) 787, 890, 1129, 1230
Bsp143I GATC 5 cut(s) 131, 211, 808, 880, 931
Bsp19I CCATGG 1 cut(s) 1287
BspACI CCGC 5 cut(s) 235, 537, 1058, 1061, 1083
BspANI GGCC 8 cut(s) 21, 368, 1064, 1166, 1196, 1215, 1236, 1292
BspCNI CTCAG 3 cut(s) 82, 902, 1230
BspFNI CGCG 1 cut(s) 1058
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 1085
BspPI GGATC 2 cut(s) 139, 939
BspTNI GGTCTC 1 cut(s) 1248
BsrDI GCAATG 2 cut(s) 74, 379
BsrI ACTGG 4 cut(s) 437, 559, 1208, 1237
BssECI CCNNGG 2 cut(s) 1237, 1287
BssMI GATC 5 cut(s) 131, 211, 808, 880, 931
BssNAI GTATAC 1 cut(s) 642
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 1237, 1287
Bst1107I GTATAC 1 cut(s) 642
Bst2UI CCWGG 5 cut(s) 10, 424, 660, 957, 975
Bst4CI ACNGT 2 cut(s) 1072, 1303
Bst6I CTCTTC 2 cut(s) 318, 746
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 370, 1168
BstDEI CTNAG 4 cut(s) 90, 221, 889, 1217
BstDSI CCRYGG 1 cut(s) 1287
BstF5I GGATG 4 cut(s) 402, 739, 919, 1048
BstFNI CGCG 1 cut(s) 1058
BstHHI GCGC 2 cut(s) 318, 1058
BstKTI GATC 5 cut(s) 134, 214, 811, 883, 934
BstMAI GTCTC 2 cut(s) 359, 1248
BstMBI GATC 5 cut(s) 131, 211, 808, 880, 931
BstMWI GCNNNNNNNGC 4 cut(s) 494, 782, 791, 1193
BstNI CCWGG 5 cut(s) 10, 424, 660, 957, 975
BstNSI RCATGY 1 cut(s) 1123
BstSCI CCNGG 5 cut(s) 8, 422, 658, 955, 973
BstSFI CTRYAG 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 645
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 4 cut(s) 43, 88, 432, 781
BstX2I RGATCY 2 cut(s) 808, 880
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 808, 880
BstZ17I GTATAC 1 cut(s) 642
BsuRI GGCC 8 cut(s) 21, 368, 1064, 1166, 1196, 1215, 1236, 1292
BtgI CCRYGG 1 cut(s) 1287
BtgZI GCGATG 1 cut(s) 855
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 4 cut(s) 402, 739, 919, 1048
BtsIMutI CAGTG 4 cut(s) 552, 1201, 1230, 1299
BveI ACCTGC 1 cut(s) 1085
Cac8I GCNNGC 2 cut(s) 370, 1168
CciI TCATGA 1 cut(s) 214
CfoI GCGC 2 cut(s) 318, 1058
Cfr13I GGNCC 5 cut(s) 19, 971, 1164, 1194, 1213
CseI GACGC 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 658
CviAII CATG 8 cut(s) 34, 215, 340, 578, 613, 1031, 1120, 1288
DdeI CTNAG 4 cut(s) 90, 221, 889, 1217
DpnI GATC 5 cut(s) 133, 213, 810, 882, 933
DpnII GATC 5 cut(s) 131, 211, 808, 880, 931
EaeI YGGCCR 1 cut(s) 1290
Eam1104I CTCTTC 2 cut(s) 318, 746
EarI CTCTTC 2 cut(s) 318, 746
EciI GGCGGA 1 cut(s) 552
Eco105I TACGTA 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 1237, 1287
Eco24I GRGCYC 4 cut(s) 787, 890, 1129, 1230
Eco31I GGTCTC 1 cut(s) 1248
Eco47I GGWCC 1 cut(s) 971
Eco57I CTGAAG 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 854
EcoRII CCWGG 5 cut(s) 8, 422, 658, 955, 973
EcoT14I CCWWGG 2 cut(s) 1237, 1287
EcoT22I ATGCAT 1 cut(s) 951
EcoT38I GRGCYC 4 cut(s) 787, 890, 1129, 1230
ErhI CCWWGG 2 cut(s) 1237, 1287
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 8 cut(s) 37, 218, 343, 581, 616, 1034, 1123, 1291
FaqI GGGAC 1 cut(s) 691
FatI CATG 8 cut(s) 33, 214, 339, 577, 612, 1030, 1119, 1287
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 6 cut(s) 57, 102, 446, 795, 1059, 1062
FokI GGATG 4 cut(s) 409, 746, 926, 1055
FriOI GRGCYC 4 cut(s) 787, 890, 1129, 1230
Fsp4HI GCNGC 6 cut(s) 57, 102, 446, 795, 1059, 1062
FspBI CTAG 5 cut(s) 173, 255, 530, 1109, 1238
GlaI GCGC 2 cut(s) 317, 1057
GluI GCNGC 6 cut(s) 57, 102, 446, 795, 1059, 1062
GsaI CCCAGC 5 cut(s) 871, 931, 994, 1186, 1282
HaeIII GGCC 8 cut(s) 21, 368, 1064, 1166, 1196, 1215, 1236, 1292
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 318, 1058
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 8 cut(s) 37, 218, 343, 581, 616, 1034, 1123, 1291
Hin6I GCGC 2 cut(s) 316, 1056
HinP1I GCGC 2 cut(s) 316, 1056
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 598
HinfI GANTC 1 cut(s) 5
HpaI GTTAAC 1 cut(s) 801
HphI GGTGA 2 cut(s) 1084, 1097
Hpy166II GTNNAC 3 cut(s) 642, 801, 1150
Hpy188I TCNGA 6 cut(s) 84, 91, 108, 695, 718, 892
Hpy188III TCNNGA 6 cut(s) 215, 358, 530, 627, 780, 878
Hpy8I GTNNAC 3 cut(s) 642, 801, 1150
Hpy99I CGWCG 1 cut(s) 832
HpyAV CCTTC 2 cut(s) 513, 766
HpyCH4III ACNGT 2 cut(s) 1072, 1303
HpyCH4IV ACGT 4 cut(s) 86, 582, 644, 1089
HpyCH4V TGCA 8 cut(s) 59, 143, 308, 372, 607, 949, 1170, 1201
HpyF10VI GCNNNNNNNGC 4 cut(s) 494, 782, 791, 1193
HpyF3I CTNAG 4 cut(s) 90, 221, 889, 1217
HpySE526I ACGT 4 cut(s) 86, 582, 644, 1089
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 8 cut(s) 37, 218, 343, 581, 616, 1034, 1123, 1291
HspAI GCGC 2 cut(s) 316, 1056
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 5 cut(s) 131, 211, 808, 880, 931
LmnI GCTCC 2 cut(s) 206, 668
Lsp1109I GCAGC 4 cut(s) 43, 88, 432, 781
LweI GCATC 3 cut(s) 103, 387, 936
MabI ACCWGGT 1 cut(s) 658
MaeI CTAG 5 cut(s) 173, 255, 530, 1109, 1238
MaeII ACGT 4 cut(s) 86, 582, 644, 1089
MaeIII GTNAC 1 cut(s) 1085
MalI GATC 5 cut(s) 133, 213, 810, 882, 933
MboI GATC 5 cut(s) 131, 211, 808, 880, 931
MboII GAAGA 7 cut(s) 150, 153, 335, 397, 682, 763, 1058
MfeI CAATTG 1 cut(s) 788
MflI RGATCY 2 cut(s) 808, 880
MhlI GDGCHC 4 cut(s) 787, 890, 1129, 1230
MlsI TGGCCA 1 cut(s) 1292
MluCI AATT 7 cut(s) 27, 111, 168, 459, 632, 788, 854
MluNI TGGCCA 1 cut(s) 1292
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 826
Mox20I TGGCCA 1 cut(s) 1292
Mph1103I ATGCAT 1 cut(s) 951
MscI TGGCCA 1 cut(s) 1292
MseI TTAA 3 cut(s) 48, 800, 1306
MslI CAYNNNNRTG 1 cut(s) 1013
Msp20I TGGCCA 1 cut(s) 1292
MspR9I CCNGG 5 cut(s) 10, 424, 660, 957, 975
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 5 cut(s) 10, 424, 660, 957, 975
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 4 cut(s) 494, 782, 791, 1193
NcoI CCATGG 1 cut(s) 1287
NdeII GATC 5 cut(s) 131, 211, 808, 880, 931
NlaIII CATG 8 cut(s) 37, 218, 343, 581, 616, 1034, 1123, 1291
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 1085
NsiI ATGCAT 1 cut(s) 951
NspI RCATGY 1 cut(s) 1123
OliI CACNNNNGTG 1 cut(s) 1013
PagI TCATGA 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 1085
PciI ACATGT 1 cut(s) 1119
PctI GAATGC 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 665
PkrI GCNGC 6 cut(s) 58, 103, 447, 796, 1060, 1063
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 645
PscI ACATGT 1 cut(s) 1119
Psp6I CCWGG 5 cut(s) 8, 422, 658, 955, 973
PspFI CCCAGC 5 cut(s) 867, 927, 990, 1182, 1278
PspGI CCWGG 5 cut(s) 8, 422, 658, 955, 973
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 5 cut(s) 19, 971, 1164, 1194, 1213
PsuI RGATCY 2 cut(s) 808, 880
RseI CAYNNNNRTG 1 cut(s) 1013
SaqAI TTAA 3 cut(s) 48, 800, 1306
SatI GCNGC 6 cut(s) 57, 102, 446, 795, 1059, 1062
Sau3AI GATC 5 cut(s) 131, 211, 808, 880, 931
Sau96I GGNCC 5 cut(s) 19, 971, 1164, 1194, 1213
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 5 cut(s) 10, 424, 660, 957, 975
SduI GDGCHC 4 cut(s) 787, 890, 1129, 1230
SexAI ACCWGGT 1 cut(s) 658
SfaNI GCATC 3 cut(s) 103, 387, 936
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 971
SmiMI CAYNNNNRTG 1 cut(s) 1013
SmlI CTYRAG 3 cut(s) 190, 876, 1245
SmoI CTYRAG 3 cut(s) 190, 876, 1245
SnaBI TACGTA 1 cut(s) 645
Sse9I AATT 7 cut(s) 27, 111, 168, 459, 632, 788, 854
SsiI CCGC 5 cut(s) 235, 537, 1058, 1061, 1083
SspMI CTAG 5 cut(s) 173, 255, 530, 1109, 1238
StyD4I CCNGG 5 cut(s) 8, 422, 658, 955, 973
StyI CCWWGG 2 cut(s) 1237, 1287
TaaI ACNGT 2 cut(s) 1072, 1303
TaiI ACGT 4 cut(s) 89, 585, 647, 1092
TaqI TCGA 1 cut(s) 934
TasI AATT 7 cut(s) 27, 111, 168, 459, 632, 788, 854
TauI GCSGC 2 cut(s) 1061, 1064
Tru1I TTAA 3 cut(s) 48, 800, 1306
Tru9I TTAA 3 cut(s) 48, 800, 1306
TscAI CASTG 4 cut(s) 559, 1208, 1237, 1306
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 4 cut(s) 56, 101, 445, 794
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 4 cut(s) 231, 750, 1019, 1059
TspGWI ACGGA 2 cut(s) 341, 1019
TspRI CASTG 4 cut(s) 559, 1208, 1237, 1306
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 971
XapI RAATTY 3 cut(s) 27, 632, 854
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 1237
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 5 cut(s) 173, 255, 530, 1109, 1238
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.