Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002351.1

Orthogroup ID

OG0013745

Physical Location & Seq

Genomic Coordinates Reverse (-)

116243 .. 116734

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcgtctccgacgacgcaccatcctgtctccgcaggcttccaattgttcgattgagcatcttcaccggcgcaccatggagtatgctttgggagatcagattcaaaaccaaaccctagaaaaagacagattcccaatttcaccagatccatccaactatatttctctgatagttgaactttgtgtgaacaaattggcgtcgatggcagtcttgcaggactcgtcgtacatggaggtcgggacgatggcgggaacattggatctgtcattcagctcctccgcgaatattgagatcttcaagctcgagttacagttagacgatcgtgatcttcatgtagtgggcgagtcgacgagctctgagagattcaacaggttatcgtggttcaagcttgctgctagatcaggctctcaagactttatccttaggctcatcgctggtgcacttgtcaatgagactattgatattttgaatccacttattctaatccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SRA1 Sec16_C WD40

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

5.61

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341671
rosa_laevigata	RLG00000004341 RLG00000016679
rosa_multiflora	Rmu_sc0002236.1_g000016 Rmu_sc0002351.1_g000032 Rmu_sc0007941.1_g000001 Rmu_sc0009323.1_g000001 Rmu_sc0011721.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029120 Rroxscaffold_2G00104280 Rroxscaffold_5G00348810
rosa_samantha	Rh1BG261400 Rh2BG231700 Rh2BG251000 Rh4AG053800 Rh4BG187600 Rh7AG317400 Rh7CG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	32, 248, 279
AclWI	GGATC	2 cut(s)	140, 267
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	104, 176, 298, 367, 385, 469
AluBI	AGCT	4 cut(s)	273, 301, 354, 388
AluI	AGCT	4 cut(s)	273, 301, 354, 388
Alw21I	GWGCWC	2 cut(s)	356, 442
Alw26I	GTCTC	3 cut(s)	11, 33, 446
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	140, 267
Ama87I	CYCGRG	1 cut(s)	302
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	56, 132
AvaI	CYCGRG	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	356, 442
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	4 cut(s)	29, 157, 196, 238
BcoDI	GTCTC	3 cut(s)	11, 33, 446
BfaI	CTAG	2 cut(s)	116, 396
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	486
Bse118I	RCCGGY	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	21, 149
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	322
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	356, 442
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	67, 487
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	3 cut(s)	11, 33, 446
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	356, 442
Bsp143I	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	32, 248, 279
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	281
BspPI	GGATC	2 cut(s)	140, 267
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	36, 390
BstDEI	CTNAG	2 cut(s)	357, 422
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	21, 149
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	7 cut(s)	97, 148, 262, 294, 322, 328, 401
BstMAI	GTCTC	3 cut(s)	11, 33, 446
BstMBI	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	3 cut(s)	145, 259, 291
BstYI	RGATCY	3 cut(s)	145, 259, 291
Bsu36I	CCTNAGG	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	21, 149
Cac8I	GCNNGC	2 cut(s)	36, 390
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	66
CseI	GACGC	2 cut(s)	24, 186
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	3 cut(s)	76, 229, 332
CviJI	RGCY	7 cut(s)	38, 273, 301, 354, 388, 405, 427
CviKI_1	RGCY	7 cut(s)	38, 273, 301, 354, 388, 405, 427
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	357, 422
DpnI	GATC	7 cut(s)	96, 147, 261, 293, 321, 327, 400
DpnII	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	3 cut(s)	79, 232, 335
FaiI	YATR	5 cut(s)	77, 84, 159, 230, 333
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	75, 228, 331
FauI	CCCGC	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	8, 136
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	116, 396
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	393
HapII	CCGG	2 cut(s)	67, 487
HgaI	GACGC	2 cut(s)	24, 186
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	79, 232, 335
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	6 cut(s)	100, 129, 218, 344, 363, 469
HpaII	CCGG	2 cut(s)	67, 487
HphI	GGTGA	2 cut(s)	56, 132
Hpy166II	GTNNAC	3 cut(s)	187, 348, 440
Hpy188I	TCNGA	4 cut(s)	11, 99, 168, 358
Hpy188III	TCNNGA	3 cut(s)	238, 323, 410
Hpy8I	GTNNAC	3 cut(s)	187, 348, 440
Hpy99I	CGWCG	5 cut(s)	15, 18, 202, 226, 352
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	214, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	357, 422
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	79, 232, 335
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	8 cut(s)	20, 38, 80, 156, 200, 355, 387, 420
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	116, 396
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	7 cut(s)	96, 147, 261, 293, 321, 327, 400
MboI	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
MboII	GAAGA	3 cut(s)	53, 286, 320
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	3 cut(s)	145, 259, 291
MhlI	GDGCHC	2 cut(s)	356, 442
MluCI	AATT	3 cut(s)	43, 135, 191
MlyI	GAGTC	2 cut(s)	212, 353
MmeI	TCCRAC	2 cut(s)	34, 177
MnlI	CCTC	2 cut(s)	226, 286
MspI	CCGG	2 cut(s)	67, 487
MunI	CAATTG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
NlaIII	CATG	3 cut(s)	79, 232, 335
PaeR7I	CTCGAG	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	100, 129, 363, 469
PkrI	GCNGC	1 cut(s)	394
Ple19I	CGATCG	1 cut(s)	322
PleI	GAGTC	2 cut(s)	212, 352
PpsI	GAGTC	2 cut(s)	212, 352
Psp124BI	GAGCTC	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	145, 259, 291
PvuI	CGATCG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	346
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	7 cut(s)	94, 145, 259, 291, 319, 325, 398
SchI	GAGTC	2 cut(s)	212, 353
SduI	GDGCHC	2 cut(s)	356, 442
SetI	ASST	6 cut(s)	237, 275, 303, 356, 374, 390
SfaNI	GCATC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	302
SgrAI	CRCCGGYG	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	302, 408
SmoI	CTYRAG	2 cut(s)	302, 408
Sse9I	AATT	3 cut(s)	43, 135, 191
SsiI	CCGC	3 cut(s)	32, 248, 279
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	116, 396
SstI	GAGCTC	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	4 cut(s)	50, 200, 303, 347
TasI	AATT	3 cut(s)	43, 135, 191
TfiI	GAWTC	4 cut(s)	100, 129, 363, 469
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	438
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	2 cut(s)	116, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.