Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002398.1

Orthogroup ID

OG0015223

Physical Location & Seq

Genomic Coordinates Reverse (-)

128517 .. 130271

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggagtgcttctcttcctccctcctccggttgcttcttctcttcaccatcagtgcttcatttctcaatgttgatgcaacgtttactggaacatatggagtaaactatggcaggatagcagacaacataccatcacctcatagtgtggtgacacttctcaaagcagcgaagatcaagaacatcagaatatatgatgctgtacctgaagtcctcacagccttcaagggatcaggaatcgaaatagttgttggacttggcaatgatttgcttaaggaaatcagcatagccgaggatcgtgccacgacttggatcaaagagaaggtccagccatacctaccagggactcacatttccggaatagcagtcgggaatgagatcttgggggggactgatgtggtactctgggaggtcttgttgcctgcagtgaagaatgtgtatagtgctcttgaccagcttggtttggctagcagcattgaggtctcaagtccacattctgaggctgtttttgccaattcttacccaccatctgcttgcatttttagagaagatattgctggttacatgaagccacttctggagttcttttcgcagattaaatctccgttttacataaacgcatatccattccttgcttataagagtgaccctgagcacattaacctcaactatgctctattcaagtcaaatcccggaattctagacacaaagactaatctccactatgacaacatgttcgatgccatggttgatgcatcttatttcgctttggagaaggctggatatgacaagatggaagtcatagtatccgaaactggttgggcatccaagggggacccagatgaagcaggagcagatgcgaaaaatgccaggacttacaacttgaatttgaagaaaaggctggccaagaagaaggggactcctcataggccaaagatggtggtgaaagcctacatttttgctttgttcaatgagaatttgaaaccggggccaacgtctgagaggaatttcggattgttcaaagcagatgggagcatttcgtatgacattgggttcactggacttgttgctccaaacgcagcatcctcatctcttcttaattacaagggcatgggatttcgaggttggtttcaatcttcgcatacctgggttttcacaagttgtgctgctgttctgcttctaatgttgtcgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

397

Amino Acids

43.48

Weight (kDa)

6.67

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 351	2.1e-83	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15800
fragaria_vesca	FvH4_6g29810
malus_domestica	MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica	Prupe.3G086200_v2.0.a1
pyrus_communis	pycom09g14110 pycom17g21580
rosa_chinensis	RchiOBHm_Chr2g0135631
rosa_laevigata	RLG00000019473
rosa_multiflora	Rmu_sc0002398.1_g000035
rosa_roxburghii	Rroxscaffold_2G00109030
rosa_rugosa	Rorug02G0325300
rosa_samantha	Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana	Rw2G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	353
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	3 cut(s)	235, 300, 317
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	4 cut(s)	693, 883, 973, 1003
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	201, 399
AfiI	CCNNNNNNNGG	2 cut(s)	27, 306
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	8 cut(s)	223, 679, 883, 889, 967, 979, 1018, 1130
AjnI	CCWGG	3 cut(s)	337, 866, 1142
AjuI	GAANNNNNNNTTGG	4 cut(s)	231, 263, 362, 394
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw21I	GWGCWC	2 cut(s)	445, 654
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	235, 300, 317
Aor13HI	TCCGGA	1 cut(s)	353
AoxI	GGCC	3 cut(s)	900, 926, 986
ApeKI	GCWGC	4 cut(s)	164, 468, 1076, 1163
ApoI	RAATTY	4 cut(s)	693, 883, 973, 1003
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 716, 748
AspS9I	GGNCC	3 cut(s)	322, 832, 986
AsuC2I	CCSGG	2 cut(s)	690, 984
AsuHPI	GGTGA	4 cut(s)	37, 126, 160, 952
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	322, 832
BalI	TGGCCA	1 cut(s)	902
Bbv12I	GWGCWC	2 cut(s)	445, 654
BbvI	GCAGC	4 cut(s)	176, 480, 1088, 1150
BccI	CCATC	6 cut(s)	56, 139, 532, 784, 928, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	3 cut(s)	339, 868, 1144
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	690, 984
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	465, 698
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	4 cut(s)	165, 469, 1077, 1164
BlsI	GCNGC	4 cut(s)	166, 470, 1078, 1165
Bme1390I	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
Bme18I	GGWCC	2 cut(s)	322, 832
BmgT120I	GGNCC	3 cut(s)	322, 832, 986
BmiI	GGNNCC	3 cut(s)	833, 834, 987
BmrFI	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
BmsI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
BmtI	GCTAGC	1 cut(s)	468
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	690, 984
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	6 cut(s)	288, 338, 741, 825, 983, 1143
BsaWI	WCCGGW	2 cut(s)	27, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 306
Bse1I	ACTGG	3 cut(s)	91, 817, 1060
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	339, 868, 1144
BseDI	CCNNGG	6 cut(s)	288, 338, 741, 825, 983, 1143
BseGI	GGATG	2 cut(s)	821, 1079
BseLI	CCNNNNNNNGG	2 cut(s)	27, 306
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	486, 639, 987
BseNI	ACTGG	3 cut(s)	91, 817, 1060
BseRI	GAGGAG	2 cut(s)	14, 909
BseXI	GCAGC	4 cut(s)	176, 480, 1088, 1150
BshFI	GGCC	3 cut(s)	902, 928, 988
BsiHKAI	GWGCWC	2 cut(s)	445, 654
BsiSI	CCGG	4 cut(s)	28, 354, 690, 983
BslFI	GGGAC	4 cut(s)	355, 400, 845, 928
BslI	CCNNNNNNNGG	2 cut(s)	27, 306
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	4 cut(s)	355, 400, 845, 928
BsnI	GGCC	3 cut(s)	902, 928, 988
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	445, 654
Bsp13I	TCCGGA	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	171, 227, 292, 309, 375
Bsp19I	CCATGG	1 cut(s)	741
BspANI	GGCC	3 cut(s)	902, 928, 988
BspCNI	CTCAG	3 cut(s)	487, 640, 988
BspEI	TCCGGA	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	833, 834, 987
BspMAI	CTGCAG	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	3 cut(s)	235, 300, 317
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	91, 817, 1060
BssECI	CCNNGG	6 cut(s)	288, 338, 741, 825, 983, 1143
BssMI	GATC	5 cut(s)	171, 227, 292, 309, 375
BssT1I	CCWWGG	2 cut(s)	741, 825
Bst2UI	CCWGG	3 cut(s)	339, 868, 1144
Bst6I	CTCTTC	3 cut(s)	19, 47, 1095
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	420, 466, 532, 900
BstDEI	CTNAG	3 cut(s)	495, 648, 996
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	2 cut(s)	821, 1079
BstKTI	GATC	5 cut(s)	174, 230, 295, 312, 378
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	5 cut(s)	171, 227, 292, 309, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
BstNI	CCWGG	3 cut(s)	339, 868, 1144
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	5 cut(s)	337, 688, 866, 982, 1142
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	176, 480, 1088, 1150
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	3 cut(s)	902, 928, 988
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	821, 1079
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	58, 429, 1053
Cac8I	GCNNGC	4 cut(s)	420, 466, 532, 900
Cfr13I	GGNCC	3 cut(s)	322, 832, 986
Csp6I	GTAC	2 cut(s)	200, 398
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviAII	CATG	4 cut(s)	562, 730, 742, 1108
CviQI	GTAC	2 cut(s)	200, 398
DdeI	CTNAG	3 cut(s)	495, 648, 996
DpnI	GATC	5 cut(s)	173, 229, 294, 311, 377
DpnII	GATC	5 cut(s)	171, 227, 292, 309, 375
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	3 cut(s)	19, 47, 1095
EarI	CTCTTC	3 cut(s)	19, 47, 1095
Eco130I	CCWWGG	2 cut(s)	741, 825
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	322, 832
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	3 cut(s)	337, 866, 1142
EcoT14I	CCWWGG	2 cut(s)	741, 825
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	741, 825
FaeI	CATG	4 cut(s)	565, 733, 745, 1111
FaqI	GGGAC	4 cut(s)	355, 400, 845, 928
FatI	CATG	4 cut(s)	561, 729, 741, 1107
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	165, 469, 1077, 1164
FokI	GGATG	2 cut(s)	808, 1066
Fsp4HI	GCNGC	4 cut(s)	165, 469, 1077, 1164
FspBI	CTAG	2 cut(s)	465, 698
GluI	GCNGC	4 cut(s)	165, 469, 1077, 1164
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	902, 928, 988
HapII	CCGG	4 cut(s)	28, 354, 690, 983
Hin1II	CATG	4 cut(s)	565, 733, 745, 1111
HinfI	GANTC	3 cut(s)	234, 343, 916
HpaII	CCGG	4 cut(s)	28, 354, 690, 983
HphI	GGTGA	4 cut(s)	37, 126, 160, 952
Hpy166II	GTNNAC	4 cut(s)	84, 103, 488, 1053
Hpy188I	TCNGA	5 cut(s)	185, 496, 808, 997, 1010
Hpy188III	TCNNGA	7 cut(s)	175, 231, 354, 367, 446, 575, 698
Hpy8I	GTNNAC	4 cut(s)	84, 103, 488, 1053
HpyAV	CCTTC	4 cut(s)	229, 313, 766, 904
HpyCH4IV	ACGT	2 cut(s)	80, 992
HpyCH4V	TGCA	4 cut(s)	77, 422, 534, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
HpyF3I	CTNAG	3 cut(s)	495, 648, 996
HpySE526I	ACGT	2 cut(s)	80, 992
Hsp92II	CATG	4 cut(s)	565, 733, 745, 1111
KflI	GGGWCCC	1 cut(s)	832
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	171, 227, 292, 309, 375
LmnI	GCTCC	3 cut(s)	848, 1029, 1072
Lsp1109I	GCAGC	4 cut(s)	176, 480, 1088, 1150
LweI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
MaeI	CTAG	2 cut(s)	465, 698
MaeII	ACGT	2 cut(s)	80, 992
MaeIII	GTNAC	3 cut(s)	148, 557, 641
MalI	GATC	5 cut(s)	173, 229, 294, 311, 377
MboI	GATC	5 cut(s)	171, 227, 292, 309, 375
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	445, 654
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	2 cut(s)	337, 910
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	754
MroI	TCCGGA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	4 cut(s)	270, 594, 657, 1095
Msp20I	TGGCCA	1 cut(s)	902
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	4 cut(s)	28, 354, 690, 983
MspR9I	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
MvaI	CCWGG	3 cut(s)	339, 868, 1144
MwoI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
NciI	CCSGG	2 cut(s)	690, 984
NcoI	CCATGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	5 cut(s)	171, 227, 292, 309, 375
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	4 cut(s)	565, 733, 745, 1111
NlaIV	GGNNCC	3 cut(s)	833, 834, 987
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	148, 641
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	166, 470, 1078, 1165
PleI	GAGTC	2 cut(s)	337, 910
PpsI	GAGTC	2 cut(s)	337, 910
PpuMI	RGGWCCY	1 cut(s)	832
PscI	ACATGT	1 cut(s)	729
PsiI	TTATAA	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	3 cut(s)	337, 866, 1142
PspGI	CCWGG	3 cut(s)	337, 866, 1142
PspN4I	GGNNCC	3 cut(s)	833, 834, 987
PspPI	GGNCC	3 cut(s)	322, 832, 986
PspPPI	RGGWCCY	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	2 cut(s)	201, 399
RsaNI	GTAC	2 cut(s)	200, 398
SaqAI	TTAA	4 cut(s)	270, 594, 657, 1095
SatI	GCNGC	4 cut(s)	165, 469, 1077, 1164
Sau3AI	GATC	5 cut(s)	171, 227, 292, 309, 375
Sau96I	GGNCC	3 cut(s)	322, 832, 986
SchI	GAGTC	2 cut(s)	337, 910
ScrFI	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
SduI	GDGCHC	2 cut(s)	445, 654
SfaNI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	322, 832
SmlI	CTYRAG	2 cut(s)	269, 481
SmoI	CTYRAG	2 cut(s)	269, 481
Sse9I	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
SspMI	CTAG	2 cut(s)	465, 698
StyD4I	CCNGG	5 cut(s)	337, 688, 866, 982, 1142
StyI	CCWWGG	2 cut(s)	741, 825
TaiI	ACGT	2 cut(s)	83, 995
TaqI	TCGA	3 cut(s)	237, 735, 1117
TasI	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	4 cut(s)	270, 594, 657, 1095
Tru9I	TTAA	4 cut(s)	270, 594, 657, 1095
TscAI	CASTG	3 cut(s)	58, 429, 1060
TseFI	GTSAC	2 cut(s)	148, 641
TseI	GCWGC	4 cut(s)	164, 468, 1076, 1163
Tsp45I	GTSAC	2 cut(s)	148, 641
TspDTI	ATGAA	3 cut(s)	48, 578, 855
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	58, 429, 1060
Van91I	CCANNNNNTGG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	322, 832
XapI	RAATTY	4 cut(s)	693, 883, 973, 1003
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	2 cut(s)	465, 698
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.