Rmu_sc0002579.1_g000002

Ribose-5-phosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002579.1
OG0006749
Physical Location & Seq
Forward (+)
6301 .. 9617
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 882 bp
atggcagccatagcaatagcttcaccaaatcccctgcattcatctctaactttatcaaatgccagaggcagaagagccttctgcacaagaacaagaacaagaacccattctctgaagattactgggtccagtctggctgatggctctgctctttttcaagcagcccattacactgtggatacctacattaaaagtggtatggtgattgggttggggtctggtatagcttctggtatggccatgcagtatataggtctgcaacttggagcaggtgctttaaaggatatagtggggataccgacgtctgtagcatctgcaagtgaggcagcaaaggcaggaattccattgggtcaccatgaggatagttctcaaattgattttgcatttgatgatgctgatattatagaagaaaggacacttattgctgtcattgggagaacaagatcgcagggtgaggagtcgatcatccaagagaagactatattaaacgcagccaataaagttgtcttcatagtcagagaaaaccagtataaatgtggtatggatggttctattccagttttggtgaatcctctcaactggatggaaactgctgaagagattgatgacctgtttttaggtgatgcagaggtatggaggagaccctcagttgggctggcagggcctcatggtggtcagtttcctctagtcaccagagaaggccataacgttattgatgtcatatttacatctccaattctaagccttgctgaagtatcaatgagccttgataatattgatggagtcatagagcatggaatcatttccaagttcccgttaagtattttgatccctatcacttttgcttgtacagagatgacatgccttttgctttatacataa

Protein Analysis

293

Amino Acids

31.28

Weight (kDa)

5.23

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 97 - 272 6.2e-34 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
AatII GACGTC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 260
AclI AACGTT 1 cut(s) 708
AclWI GGATC 1 cut(s) 823
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 3 cut(s) 134, 615, 771
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 3 cut(s) 650, 651, 671
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 2 cut(s) 20, 227
AluI AGCT 2 cut(s) 20, 227
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 1 cut(s) 823
AoxI GGCC 3 cut(s) 237, 662, 700
ApeKI GCWGC 4 cut(s) 5, 161, 326, 491
ApoI RAATTY 1 cut(s) 339
ArsI GACNNNNNNTTYG 2 cut(s) 850, 882
Asp700I GAANNNNTTC 2 cut(s) 106, 802
AspS9I GGNCC 2 cut(s) 126, 662
AsuHPI GGTGA 7 cut(s) 15, 214, 344, 464, 577, 632, 682
AvaII GGWCC 1 cut(s) 126
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BalI TGGCCA 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 482, 499
BbvI GCAGC 4 cut(s) 17, 173, 338, 503
BccI CCATC 4 cut(s) 134, 539, 577, 773
BciVI GTATCC 2 cut(s) 172, 288
BcoDI GTCTC 1 cut(s) 634
BfaI CTAG 1 cut(s) 686
BfmI CTRYAG 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 260
BfuI GTATCC 2 cut(s) 172, 288
BisI GCNGC 4 cut(s) 6, 162, 327, 492
BlsI GCNGC 4 cut(s) 7, 163, 328, 493
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 126, 662
BmiI GGNNCC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 320, 382, 613
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 2 cut(s) 482, 499
BsaBI GATNNNNATC 1 cut(s) 833
BsaHI GRCGYC 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 634
Bsc4I CCNNNNNNNGG 3 cut(s) 650, 651, 671
Bse1I ACTGG 5 cut(s) 127, 129, 526, 557, 584
Bse8I GATNNNNATC 1 cut(s) 833
BseGI GGATG 3 cut(s) 465, 550, 588
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 3 cut(s) 650, 651, 671
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 5 cut(s) 127, 129, 526, 557, 584
BseRI GAGGAG 2 cut(s) 470, 652
BseXI GCAGC 4 cut(s) 17, 173, 338, 503
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 3 cut(s) 239, 664, 702
BslI CCNNNNNNNGG 3 cut(s) 650, 651, 671
BsmAI GTCTC 1 cut(s) 634
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 3 cut(s) 239, 664, 702
Bso31I GGTCTC 1 cut(s) 634
Bsp1407I TGTACA 1 cut(s) 848
Bsp143I GATC 3 cut(s) 443, 462, 828
BspANI GGCC 3 cut(s) 239, 664, 702
BspCNI CTCAG 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 823
BspQI GCTCTTC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 848
BsrI ACTGG 5 cut(s) 127, 129, 526, 557, 584
BssMI GATC 3 cut(s) 443, 462, 828
BssNI GRCGYC 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 67, 591
BstACI GRCGYC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 646, 740
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 3 cut(s) 465, 550, 588
BstKTI GATC 3 cut(s) 446, 465, 831
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 3 cut(s) 443, 462, 828
BstMWI GCNNNNNNNGC 4 cut(s) 11, 323, 332, 661
BstNSI RCATGY 1 cut(s) 864
BstPI GGTNACC 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 17, 173, 338, 503
BstV2I GAAGAC 2 cut(s) 482, 499
BsuI GTATCC 2 cut(s) 172, 288
BsuRI GGCC 3 cut(s) 239, 664, 702
BtsCI GGATG 3 cut(s) 465, 550, 588
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 657
Cfr13I GGNCC 2 cut(s) 126, 662
Csp6I GTAC 1 cut(s) 849
CviAII CATG 5 cut(s) 241, 356, 668, 794, 861
CviQI GTAC 1 cut(s) 849
DdeI CTNAG 2 cut(s) 646, 740
DpnI GATC 3 cut(s) 445, 464, 830
DpnII GATC 3 cut(s) 443, 462, 828
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 67, 591
EarI CTCTTC 2 cut(s) 67, 591
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 3 cut(s) 134, 615, 771
Eco91I GGTNACC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 662
EcoO65I GGTNACC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 339
FaeI CATG 5 cut(s) 244, 359, 671, 797, 864
FatI CATG 5 cut(s) 240, 355, 667, 793, 860
Fnu4HI GCNGC 4 cut(s) 6, 162, 327, 492
FokI GGATG 3 cut(s) 452, 557, 595
Fsp4HI GCNGC 4 cut(s) 6, 162, 327, 492
FspBI CTAG 1 cut(s) 686
GluI GCNGC 4 cut(s) 6, 162, 327, 492
HaeIII GGCC 3 cut(s) 239, 664, 702
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 5 cut(s) 244, 359, 671, 797, 864
HinfI GANTC 4 cut(s) 458, 568, 783, 798
HphI GGTGA 7 cut(s) 15, 214, 344, 464, 577, 632, 682
Hpy188I TCNGA 2 cut(s) 114, 518
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 88, 692
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 302, 708
HpyCH4V TGCA 7 cut(s) 37, 84, 244, 259, 317, 383, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 323, 332, 661
HpyF3I CTNAG 2 cut(s) 646, 740
HpySE526I ACGT 2 cut(s) 302, 708
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 5 cut(s) 244, 359, 671, 797, 864
Kzo9I GATC 3 cut(s) 443, 462, 828
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 4 cut(s) 17, 173, 338, 503
LweI GCATC 3 cut(s) 320, 382, 613
MaeI CTAG 1 cut(s) 686
MaeII ACGT 2 cut(s) 302, 708
MaeIII GTNAC 2 cut(s) 350, 688
MalI GATC 3 cut(s) 445, 464, 830
MboI GATC 3 cut(s) 443, 462, 828
MboII GAAGA 6 cut(s) 84, 127, 419, 487, 499, 608
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 3 cut(s) 339, 372, 735
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 2 cut(s) 467, 792
Mox20I TGGCCA 1 cut(s) 239
MroXI GAANNNNTTC 2 cut(s) 106, 802
MscI TGGCCA 1 cut(s) 239
MseI TTAA 4 cut(s) 189, 278, 485, 818
Msp20I TGGCCA 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 37
MwoI GCNNNNNNNGC 4 cut(s) 11, 323, 332, 661
NdeII GATC 3 cut(s) 443, 462, 828
NlaIII CATG 5 cut(s) 244, 359, 671, 797, 864
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 350, 688
NspI RCATGY 1 cut(s) 864
PaqCI CACCTGC 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 67
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 2 cut(s) 106, 802
PfeI GAWTC 2 cut(s) 568, 798
PkrI GCNGC 4 cut(s) 7, 163, 328, 493
PleI GAGTC 2 cut(s) 466, 791
PpsI GAGTC 2 cut(s) 466, 791
Psp1406I AACGTT 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 126, 662
PsrI GAACNNNNNNTAC 2 cut(s) 532, 564
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 4 cut(s) 189, 278, 485, 818
SatI GCNGC 4 cut(s) 6, 162, 327, 492
Sau3AI GATC 3 cut(s) 443, 462, 828
Sau96I GGNCC 2 cut(s) 126, 662
SchI GAGTC 2 cut(s) 467, 792
SfaNI GCATC 3 cut(s) 320, 382, 613
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 126
Sse9I AATT 3 cut(s) 339, 372, 735
SspI AATATT 1 cut(s) 775
SspMI CTAG 1 cut(s) 686
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 305, 711
TaqI TCGA 1 cut(s) 461
TasI AATT 3 cut(s) 339, 372, 735
TatI WGTACW 1 cut(s) 848
TfiI GAWTC 2 cut(s) 568, 798
Tru1I TTAA 4 cut(s) 189, 278, 485, 818
Tru9I TTAA 4 cut(s) 189, 278, 485, 818
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 350, 688
TseI GCWGC 4 cut(s) 5, 161, 326, 491
Tsp45I GTSAC 2 cut(s) 350, 688
TspDTI ATGAA 2 cut(s) 30, 499
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 339
XceI RCATGY 1 cut(s) 864
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmnI GAANNNNTTC 2 cut(s) 106, 802
XspI CTAG 1 cut(s) 686
ZraI GACGTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.