Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002652.1

Orthogroup ID

OG0004461

Physical Location & Seq

Genomic Coordinates Forward (+)

52856 .. 54883

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002652.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgtcgttagttccatattccgacccgaattcggagccggactcatccaaccctgcatggcaggacatgttccgatcagcttcaaaccggaaatctcctccggaccctcacgcgcctcacgcgccgccgtcgccggctccggacccgccgaaaccggccggcccagatcacaaaactggcccgaccggcgattcccaggtacggctagccctgtacataaccatggcgcatgctggtctggccttcaccatttttatattctatgctgtgggtaagcttttagaggagtacttgaggcctattcagtgggctgtgttgtgttcaattcctttgagaggtatacagcaagcccttgtggggttttggtctgagccattgaggcttgggctgactgagactgttttggctgttcctgttgcgattttcggggtttttgtgggtacccttgtggaggttagggagatttgtttgagggtgttcctccggaagccgaaattggagcaccggaggaagcaccagagtgagttttctaagctgttgaggtggttggtgtcgttttggatacttatacttgcttatgagaggattggtggtgttgggtctttggggattggatacatagtagccatcatcttgtccagtagtcatcttgtgcttatggattatggttcatctgaaattcaggaggatataccaggtcatagtgaatatctcacaggacttagcatcattggtggaatgacattgtttccatctgcattggagggtgcaattatgggcccgctcataaccacggttgtgattgctctcaaggatttatacgtggaatttgttctggatgaacccaaggataaagatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AI-2E_transport

Protein Analysis

287

Amino Acids

31.55

Weight (kDa)

5.9

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55960
fragaria_vesca	FvH4_3g42400 FvH4_6g51530
malus_domestica	MD11G1036300.v1.1 MD17G1026100.v1.1
prunus_persica	Prupe.3G292600_v2.0.a1 Prupe.6G027100_v2.0.a1
pyrus_communis	pycom17g02120
rosa_chinensis	RchiOBHm_Chr5g0075891
rosa_laevigata	RLG00000022165 RLG00000036599
rosa_multiflora	Rmu_co8453001.1_g000001 Rmu_co8486383.1_g000001 Rmu_sc0002652.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005790 Rroxscaffold_2G00079170 Rroxscaffold_2G00128200 Rroxscaffold_2G00128210 Rroxscaffold_3G00229540 Rroxscaffold_5G00350470
rosa_rugosa	Rorug02G0565800 Rorug05G0443300
rosa_samantha	Rh2AG646000 Rh2BG656700 Rh2CG621800 Rh2DG670100 Rh5AG500200 Rh5BG521300 Rh5CG545400 Rh5DG534100
rosa_wichuraiana	Rw2G053050 Rw5G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	2 cut(s)	113, 122
AccIII	TCCGGA	3 cut(s)	100, 139, 483
AciI	CCGC	3 cut(s)	125, 146, 782
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	28, 678, 827
AfaI	GTAC	4 cut(s)	201, 215, 290, 442
AfiI	CCNNNNNNNGG	5 cut(s)	31, 201, 335, 357, 451
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	84, 324
AjnI	CCWGG	2 cut(s)	195, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AleI	CACNNNNGTG	2 cut(s)	519, 797
AluBI	AGCT	3 cut(s)	80, 277, 535
AluI	AGCT	3 cut(s)	80, 277, 535
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	389
Aor13HI	TCCGGA	3 cut(s)	100, 139, 483
AoxI	GGCC	6 cut(s)	156, 160, 178, 240, 296, 778
ApaI	GGGCCC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	28, 678, 827
Asp700I	GAANNNNTTC	1 cut(s)	831
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	3 cut(s)	115, 124, 229
AspS9I	GGNCC	6 cut(s)	103, 142, 161, 179, 778, 779
AsuHPI	GGTGA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	103, 142
BaeGI	GKGCMC	1 cut(s)	782
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	504
BccI	CCATC	2 cut(s)	635, 760
BceAI	ACGGC	2 cut(s)	112, 218
BciT130I	CCWGG	2 cut(s)	197, 696
BciVI	GTATCC	2 cut(s)	555, 608
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	206
BfuI	GTATCC	2 cut(s)	555, 608
BglI	GCCNNNNNGGC	2 cut(s)	186, 379
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	197, 696
Bme18I	GGWCC	2 cut(s)	103, 142
BmgT120I	GGNCC	6 cut(s)	103, 142, 161, 179, 778, 779
BmiI	GGNNCC	6 cut(s)	36, 105, 138, 144, 442, 780
BmrFI	CCNGG	2 cut(s)	197, 696
BmsI	GCATC	1 cut(s)	735
BmtI	GCTAGC	1 cut(s)	209
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuEI	CTTGAG	2 cut(s)	313, 794
BsaAI	YACGTR	1 cut(s)	823
BsaJI	CCNNGG	4 cut(s)	195, 222, 792, 846
BsaWI	WCCGGW	5 cut(s)	87, 100, 139, 483, 504
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 201, 335, 357, 451
Bse118I	RCCGGY	4 cut(s)	133, 154, 158, 185
Bse1I	ACTGG	2 cut(s)	181, 639
BseAI	TCCGGA	3 cut(s)	100, 139, 483
BseBI	CCWGG	2 cut(s)	197, 696
BseDI	CCNNGG	4 cut(s)	195, 222, 792, 846
BseGI	GGATG	2 cut(s)	44, 844
BseLI	CCNNNNNNNGG	5 cut(s)	31, 201, 335, 357, 451
BseMII	CTCAG	2 cut(s)	360, 384
BseNI	ACTGG	2 cut(s)	181, 639
BseRI	GAGGAG	2 cut(s)	87, 299
BseSI	GKGCMC	1 cut(s)	782
BseX3I	CGGCCG	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	113, 122
Bsh1285I	CGRYCG	2 cut(s)	159, 186
BshFI	GGCC	6 cut(s)	158, 162, 180, 242, 298, 780
BshNI	GGYRCC	1 cut(s)	440
BsiEI	CGRYCG	2 cut(s)	159, 186
BsiHKAI	GWGCWC	1 cut(s)	504
BslI	CCNNNNNNNGG	5 cut(s)	31, 201, 335, 357, 451
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	6 cut(s)	158, 162, 180, 242, 298, 780
Bsp120I	GGGCCC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	504, 782
Bsp13I	TCCGGA	3 cut(s)	100, 139, 483
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	74, 166
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	3 cut(s)	125, 146, 782
BspANI	GGCC	6 cut(s)	158, 162, 180, 242, 298, 780
BspCNI	CTCAG	2 cut(s)	361, 385
BspEI	TCCGGA	3 cut(s)	100, 139, 483
BspFNI	CGCG	2 cut(s)	113, 122
BspLI	GGNNCC	6 cut(s)	36, 105, 138, 144, 442, 780
BspOI	GCTAGC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	784
BsrFI	RCCGGY	4 cut(s)	133, 154, 158, 185
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	181, 639
BssAI	RCCGGY	4 cut(s)	133, 154, 158, 185
BssECI	CCNNGG	4 cut(s)	195, 222, 792, 846
BssMI	GATC	2 cut(s)	74, 166
BssNAI	GTATAC	1 cut(s)	341
BssT1I	CCWWGG	2 cut(s)	222, 846
Bst1107I	GTATAC	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	197, 696
Bst4CI	ACNGT	2 cut(s)	400, 796
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	823
BstC8I	GCNNGC	6 cut(s)	135, 160, 207, 231, 348, 782
BstDEI	CTNAG	4 cut(s)	369, 393, 531, 722
BstDSI	CCRYGG	2 cut(s)	222, 792
BstENI	CCTNNNNNAGG	2 cut(s)	333, 449
BstF5I	GGATG	2 cut(s)	44, 844
BstFNI	CGCG	2 cut(s)	113, 122
BstHHI	GCGC	3 cut(s)	115, 124, 229
BstKTI	GATC	2 cut(s)	77, 169
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	74, 166
BstMCI	CGRYCG	2 cut(s)	159, 186
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 121, 130, 186, 239, 379
BstNI	CCWGG	2 cut(s)	197, 696
BstNSI	RCATGY	2 cut(s)	70, 233
BstSCI	CCNGG	2 cut(s)	195, 694
BstSLI	GKGCMC	1 cut(s)	782
BstUI	CGCG	2 cut(s)	113, 122
BstZ17I	GTATAC	1 cut(s)	341
BstZI	CGGCCG	1 cut(s)	156
BsuI	GTATCC	2 cut(s)	555, 608
BsuRI	GGCC	6 cut(s)	158, 162, 180, 242, 298, 780
BtgI	CCRYGG	2 cut(s)	222, 792
BtsCI	GGATG	2 cut(s)	44, 844
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	6 cut(s)	135, 160, 207, 231, 348, 782
CfoI	GCGC	3 cut(s)	115, 124, 229
Cfr10I	RCCGGY	4 cut(s)	133, 154, 158, 185
Cfr13I	GGNCC	6 cut(s)	103, 142, 161, 179, 778, 779
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	4 cut(s)	200, 214, 289, 441
CviAII	CATG	4 cut(s)	57, 67, 223, 230
CviQI	GTAC	4 cut(s)	200, 214, 289, 441
DdeI	CTNAG	4 cut(s)	369, 393, 531, 722
DpnI	GATC	2 cut(s)	76, 168
DpnII	GATC	2 cut(s)	74, 166
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	222, 846
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	2 cut(s)	103, 142
Eco52I	CGGCCG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	2 cut(s)	333, 449
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	195, 694
EcoT14I	CCWWGG	2 cut(s)	222, 846
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	2 cut(s)	222, 846
FaeI	CATG	4 cut(s)	60, 70, 226, 233
FatI	CATG	4 cut(s)	56, 66, 222, 229
FauI	CCCGC	2 cut(s)	153, 789
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	2 cut(s)	31, 851
FriOI	GRGCYC	1 cut(s)	782
FseI	GGCCGGCC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	3 cut(s)	114, 123, 228
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	6 cut(s)	158, 162, 180, 242, 298, 780
HhaI	GCGC	3 cut(s)	115, 124, 229
Hin1II	CATG	4 cut(s)	60, 70, 226, 233
Hin6I	GCGC	3 cut(s)	113, 122, 227
HinP1I	GCGC	3 cut(s)	113, 122, 227
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	41, 191
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	22, 34, 74, 370, 676
Hpy188III	TCNNGA	5 cut(s)	101, 140, 484, 683, 836
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	400, 796
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	3 cut(s)	56, 758, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 121, 130, 186, 239, 379
HpyF3I	CTNAG	4 cut(s)	369, 393, 531, 722
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	4 cut(s)	60, 70, 226, 233
HspAI	GCGC	3 cut(s)	113, 122, 227
Kpn2I	TCCGGA	3 cut(s)	100, 139, 483
KpnI	GGTACC	1 cut(s)	444
KroI	GCCGGC	2 cut(s)	133, 158
KroNI	GCCGGC	2 cut(s)	135, 160
Kzo9I	GATC	2 cut(s)	74, 166
LmnI	GCTCC	3 cut(s)	34, 142, 499
LweI	GCATC	1 cut(s)	735
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	822
MalI	GATC	2 cut(s)	76, 168
MbiI	CCGCTC	1 cut(s)	784
MboI	GATC	2 cut(s)	74, 166
MhlI	GDGCHC	2 cut(s)	504, 782
MluCI	AATT	6 cut(s)	28, 324, 494, 678, 771, 827
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	45, 72
MroI	TCCGGA	3 cut(s)	100, 139, 483
MroNI	GCCGGC	2 cut(s)	133, 158
MroXI	GAANNNNTTC	1 cut(s)	831
MslI	CAYNNNNRTG	3 cut(s)	221, 519, 797
MspR9I	CCNGG	2 cut(s)	197, 696
MvaI	CCWGG	2 cut(s)	197, 696
MvnI	CGCG	2 cut(s)	113, 122
MwoI	GCNNNNNNNGC	6 cut(s)	119, 121, 130, 186, 239, 379
NaeI	GCCGGC	2 cut(s)	135, 160
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	74, 166
NgoMIV	GCCGGC	2 cut(s)	133, 158
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	4 cut(s)	60, 70, 226, 233
NlaIV	GGNNCC	6 cut(s)	36, 105, 138, 144, 442, 780
NspI	RCATGY	2 cut(s)	70, 233
OliI	CACNNNNGTG	2 cut(s)	519, 797
PaeI	GCATGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	298
PciI	ACATGT	1 cut(s)	66
PdiI	GCCGGC	2 cut(s)	135, 160
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	823
PscI	ACATGT	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	195, 694
PspGI	CCWGG	2 cut(s)	195, 694
PspN4I	GGNNCC	6 cut(s)	36, 105, 138, 144, 442, 780
PspOMI	GGGCCC	1 cut(s)	778
PspPI	GGNCC	6 cut(s)	103, 142, 161, 179, 778, 779
RigI	GGCCGGCC	1 cut(s)	162
RsaI	GTAC	4 cut(s)	201, 215, 290, 442
RsaNI	GTAC	4 cut(s)	200, 214, 289, 441
RseI	CAYNNNNRTG	3 cut(s)	221, 519, 797
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	74, 166
Sau96I	GGNCC	6 cut(s)	103, 142, 161, 179, 778, 779
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	197, 696
SduI	GDGCHC	2 cut(s)	504, 782
SetI	ASST	9 cut(s)	82, 201, 279, 340, 456, 537, 545, 700, 825
SexAI	ACCWGGT	1 cut(s)	694
SfaNI	GCATC	1 cut(s)	735
SinI	GGWCC	2 cut(s)	103, 142
SmiMI	CAYNNNNRTG	3 cut(s)	221, 519, 797
SmlI	CTYRAG	2 cut(s)	292, 809
SmoI	CTYRAG	2 cut(s)	292, 809
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	6 cut(s)	28, 324, 494, 678, 771, 827
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	3 cut(s)	125, 146, 782
SspMI	CTAG	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	195, 694
StyI	CCWWGG	2 cut(s)	222, 846
TaaI	ACNGT	2 cut(s)	400, 796
TaiI	ACGT	1 cut(s)	825
TasI	AATT	6 cut(s)	28, 324, 494, 678, 771, 827
TatI	WGTACW	2 cut(s)	213, 288
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	660, 855
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	103, 142
XagI	CCTNNNNNAGG	2 cut(s)	333, 449
XapI	RAATTY	3 cut(s)	28, 678, 827
XceI	RCATGY	2 cut(s)	70, 233
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.