Rroxscaffold_5G00350470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004461
Physical Location & Seq
Reverse (-)
24445731 .. 24448595
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350470.1

Sequence Viewer

Length: 681 bp
ATGGCCGGAATCGCCCGAAATTGGCGAAAACCCCAAACTGCAGCCGGAGAGGACTTTGCTTCGGTCCGAGCTTTTCCGGCCAAATCTTCGAAATCTAAGGGCACCGCCGTGACAAGGAGGAGGAGGCGACCTCGTGGTGGCCGGCTTTCGCTCGATGGCCGGACGGGGGCCAATCGAAGGGAACAAGAATTTCCCGAAGAGGGAAGGAGAAAGTCGGGGGAGAGGAGAGAGAAAGGTTCTTGGAACCCTCTCCTTCCCCAAATACCATTCATTCCTCACTCAAAAGCGGTTCTTCGCCTCCGGGATATTAAAGTTTCAGCCTTGGTGCGTTGGTCGGAATCGGAGGATTCCAAGTGCTCGCTTTCATCGCCGCCGGCTGGATTCGGGTTTGCTCGGATTATGTCGAAGGCGGGCAGGGAGGGGAAGATAAGATTGGGGTGTTCTGTGATGGGCGGGAAGATTTCTCGCCGCTGTTCCCCGCGCCGTGGAGTGGTGGTGATGCTTCTTGCCGATGTGATCCCTTCTTTCATTCTCCTTGGATTGTTCTTACCTAATGACGTGGTTAAGAAATTCGGAGAGCCTTGTCGGAGCTTCTTCATCGGTATTATTGGGCCGCGATGGGTCCTCTTACTCGGCCGTCAATTCGGAAAACTTTACTTGTCCGTTGACTCCAATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.16

Weight (kDa)

11.37

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccII CGCG 2 cut(s) 481, 616
AciI CCGC 8 cut(s) 105, 287, 371, 410, 453, 469, 479, 614
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 5 cut(s) 3, 78, 139, 157, 634
AcsI RAATTY 2 cut(s) 188, 569
AfiI CCNNNNNNNGG 9 cut(s) 21, 114, 137, 166, 177, 200, 377, 485, 490
AjiI CACGTC 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 2 cut(s) 71, 591
AluI AGCT 2 cut(s) 71, 591
Alw21I GWGCWC 1 cut(s) 359
AlwI GGATC 1 cut(s) 511
AoxI GGCC 7 cut(s) 3, 78, 139, 157, 168, 611, 634
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 188, 569
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 4 cut(s) 64, 168, 611, 622
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 64, 622
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 149, 442, 612
BceAI ACGGC 3 cut(s) 92, 468, 621
BcnI CCSGG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 4 cut(s) 42, 371, 469, 614
BlsI GCNGC 4 cut(s) 43, 372, 470, 615
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 64, 622
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 4 cut(s) 64, 168, 611, 622
BmiI GGNNCC 4 cut(s) 103, 169, 245, 623
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 115, 147
Bpu14I TTCGAA 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 321, 484, 535
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 9 cut(s) 21, 114, 137, 166, 177, 200, 377, 485, 490
Bse118I RCCGGY 2 cut(s) 141, 373
BseDI CCNNGG 3 cut(s) 321, 484, 535
BseLI CCNNNNNNNGG 9 cut(s) 21, 114, 137, 166, 177, 200, 377, 485, 490
BseRI GAGGAG 3 cut(s) 133, 136, 238
BseSI GKGCMC 1 cut(s) 104
BseX3I CGGCCG 1 cut(s) 634
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 481, 616
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 7 cut(s) 5, 80, 141, 159, 170, 613, 636
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 7 cut(s) 6, 45, 77, 142, 160, 301, 374
BslI CCNNNNNNNGG 9 cut(s) 21, 114, 137, 166, 177, 200, 377, 485, 490
BsnI GGCC 7 cut(s) 5, 80, 141, 159, 170, 613, 636
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 104, 359
Bsp143I GATC 1 cut(s) 516
BspACI CCGC 8 cut(s) 105, 287, 371, 410, 453, 469, 479, 614
BspANI GGCC 7 cut(s) 5, 80, 141, 159, 170, 613, 636
BspFNI CGCG 2 cut(s) 481, 616
BspLI GGNNCC 4 cut(s) 103, 169, 245, 623
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 141, 373
BssAI RCCGGY 2 cut(s) 141, 373
BssECI CCNNGG 3 cut(s) 321, 484, 535
BssMI GATC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 321, 535
Bst2BI CACGAG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 143, 359, 375, 412
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 484
BstFNI CGCG 2 cut(s) 481, 616
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 1 cut(s) 519
BstMBI GATC 1 cut(s) 516
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 3 cut(s) 11, 77, 367
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 2 cut(s) 481, 616
BstV1I GCAGC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 634
BsuRI GGCC 7 cut(s) 5, 80, 141, 159, 170, 613, 636
BtgI CCRYGG 1 cut(s) 484
BtgZI GCGATG 2 cut(s) 351, 631
BtrI CACGTC 1 cut(s) 559
Cac8I GCNNGC 4 cut(s) 143, 359, 375, 412
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 2 cut(s) 141, 373
Cfr13I GGNCC 4 cut(s) 64, 168, 611, 622
CpoI CGGWCCG 1 cut(s) 64
CspI CGGWCCG 1 cut(s) 64
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
EaeI YGGCCR 5 cut(s) 3, 78, 139, 157, 634
EagI CGGCCG 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 321, 535
Eco47I GGWCC 2 cut(s) 64, 622
Eco52I CGGCCG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 321, 535
ErhI CCWWGG 2 cut(s) 321, 535
FaiI YATR 1 cut(s) 401
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FauI CCCGC 3 cut(s) 403, 446, 486
Fnu4HI GCNGC 4 cut(s) 42, 371, 469, 614
Fsp4HI GCNGC 4 cut(s) 42, 371, 469, 614
GlaI GCGC 1 cut(s) 482
GluI GCNGC 4 cut(s) 42, 371, 469, 614
HaeIII GGCC 7 cut(s) 5, 80, 141, 159, 170, 613, 636
HapII CCGG 7 cut(s) 6, 45, 77, 142, 160, 301, 374
HhaI GCGC 1 cut(s) 483
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 5 cut(s) 9, 338, 347, 381, 668
HpaII CCGG 7 cut(s) 6, 45, 77, 142, 160, 301, 374
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 7 cut(s) 68, 337, 343, 396, 575, 588, 647
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 5 cut(s) 171, 198, 263, 400, 531
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 77, 367
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 558
HspAI GCGC 1 cut(s) 481
KroI GCCGGC 2 cut(s) 141, 373
KroNI GCCGGC 2 cut(s) 143, 375
Kzo9I GATC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 588
LpnPI CCDG 9 cut(s) 19, 58, 90, 155, 173, 314, 363, 387, 400
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 489
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 6 cut(s) 78, 209, 284, 436, 469, 586
MhlI GDGCHC 2 cut(s) 104, 359
MluCI AATT 5 cut(s) 19, 188, 569, 641, 673
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 2 cut(s) 315, 566
MroNI GCCGGC 2 cut(s) 141, 373
MseI TTAA 2 cut(s) 309, 564
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 471
MspI CCGG 7 cut(s) 6, 45, 77, 142, 160, 301, 374
MspR9I CCNGG 1 cut(s) 302
MvnI CGCG 2 cut(s) 481, 616
MwoI GCNNNNNNNGC 3 cut(s) 11, 77, 367
NaeI GCCGGC 2 cut(s) 143, 375
NciI CCSGG 1 cut(s) 302
NdeII GATC 1 cut(s) 516
NgoMIV GCCGGC 2 cut(s) 141, 373
NlaIV GGNNCC 4 cut(s) 103, 169, 245, 623
NmeAIII GCCGAG 1 cut(s) 612
NmuCI GTSAC 1 cut(s) 109
NspV TTCGAA 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 107
PdiI GCCGGC 2 cut(s) 143, 375
PfeI GAWTC 4 cut(s) 9, 338, 347, 381
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 4 cut(s) 43, 372, 470, 615
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
PpuMI RGGWCCY 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 622
PspN4I GGNNCC 4 cut(s) 103, 169, 245, 623
PspPI GGNCC 4 cut(s) 64, 168, 611, 622
PspPPI RGGWCCY 1 cut(s) 622
PstI CTGCAG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 107
Rsr2I CGGWCCG 1 cut(s) 64
RsrII CGGWCCG 1 cut(s) 64
SaqAI TTAA 2 cut(s) 309, 564
SatI GCNGC 4 cut(s) 42, 371, 469, 614
Sau3AI GATC 1 cut(s) 516
Sau96I GGNCC 4 cut(s) 64, 168, 611, 622
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 104, 359
SetI ASST 6 cut(s) 73, 133, 238, 553, 561, 593
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 2 cut(s) 64, 622
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 5 cut(s) 19, 188, 569, 641, 673
SsiI CCGC 8 cut(s) 105, 287, 371, 410, 453, 469, 479, 614
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 2 cut(s) 321, 535
TaiI ACGT 1 cut(s) 561
TaqI TCGA 4 cut(s) 89, 153, 175, 404
TaqII GACCGA 1 cut(s) 52
TasI AATT 5 cut(s) 19, 188, 569, 641, 673
TauI GCSGC 3 cut(s) 373, 471, 616
TfiI GAWTC 4 cut(s) 9, 338, 347, 381
Tru1I TTAA 2 cut(s) 309, 564
Tru9I TTAA 2 cut(s) 309, 564
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 259, 354, 517, 586
TspGWI ACGGA 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 64, 622
XapI RAATTY 2 cut(s) 188, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.