Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004461

Physical Location & Seq

Genomic Coordinates Forward (+)

63826177 .. 63826806

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGTATGCTTCCAATTTCAAAGTCTGCAAGGGTTAGATGCGTTGAAGTTCTTGATAATGCCATATCCGGTGTTCTTTTGGCTACAGCTGAGATTGCCATTTTTCAAGGATGTCTTACATGGCTTTTATTCGACTATTTAAGATACACTTCTTGTACATGTCCTTGTTCTTGCCATCTTCGGTTCCGTGCCGCCAATATTCCCATCTTGGTTTGCAACTATTCCAAGCAGCTCTTCAACTTGCTGGTTGGAAGATACATAGTAGCTATCATCTTGTCCAGTAGTCATCTTGTGCTTATGGATTATGGTTCATACGAAATTCGGGAGGATATACCTAGTCATAGTGAATATCTCACGGGACTTAGCATCATTGATGGAATGACATTGTTTCCATCTGCATTGGAGGGTGCAATTATGGGCCTGCTCATAACCACGGTTGTGATTGCTCTCAAGGATTTATACGTGGAATTTGTTCTGGATGAACCCAAGGTTAAAGATGAGTGTTTGATACTTGGCAGCGGTGGAGAATTTTGGAGGAATTTGCTGCTGAAACGATTGGGTAAATTTCGTACCCTTGTTGGTGTAAAATTAGTTGATTTATTATTAACTATGCTTATTGTGAATCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AI-2E_transport

Protein Analysis

209

Amino Acids

23.33

Weight (kDa)

6.81

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55960
fragaria_vesca	FvH4_3g42400 FvH4_6g51530
malus_domestica	MD11G1036300.v1.1 MD17G1026100.v1.1
prunus_persica	Prupe.3G292600_v2.0.a1 Prupe.6G027100_v2.0.a1
pyrus_communis	pycom17g02120
rosa_chinensis	RchiOBHm_Chr5g0075891
rosa_laevigata	RLG00000022165 RLG00000036599
rosa_multiflora	Rmu_co8453001.1_g000001 Rmu_co8486383.1_g000001 Rmu_sc0002652.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005790 Rroxscaffold_2G00079170 Rroxscaffold_2G00128200 Rroxscaffold_2G00128210 Rroxscaffold_3G00229540 Rroxscaffold_5G00350470
rosa_rugosa	Rorug02G0565800 Rorug05G0443300
rosa_samantha	Rh2AG646000 Rh2BG656700 Rh2CG621800 Rh2DG670100 Rh5AG500200 Rh5BG521300 Rh5CG545400 Rh5DG534100
rosa_wichuraiana	Rw2G053050 Rw5G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	192, 519
AcsI	RAATTY	5 cut(s)	318, 467, 527, 538, 563
AfaI	GTAC	2 cut(s)	157, 571
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	21, 47, 107, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	3 cut(s)	89, 232, 266
AluI	AGCT	3 cut(s)	89, 232, 266
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	229, 516, 544
ApoI	RAATTY	5 cut(s)	318, 467, 527, 538, 563
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	241, 528, 531
BccI	CCATC	4 cut(s)	183, 212, 368, 400
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	4 cut(s)	192, 230, 517, 545
BlsI	GCNGC	4 cut(s)	193, 231, 518, 546
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	185
BmsI	GCATC	2 cut(s)	29, 375
BpuEI	CTTGAG	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	432, 486
BsaWI	WCCGGW	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	432, 486
BseGI	GGATG	2 cut(s)	116, 484
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	241, 528, 531
BshFI	GGCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	155
BspACI	CCGC	2 cut(s)	192, 519
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	432, 486
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	90, 362
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	116, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	241, 528, 531
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	116, 484
Cac8I	GCNNGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	156, 570
CviAII	CATG	2 cut(s)	120, 159
CviJI	RGCY	6 cut(s)	83, 89, 124, 232, 266, 420
CviKI_1	RGCY	6 cut(s)	83, 89, 124, 232, 266, 420
CviQI	GTAC	2 cut(s)	156, 570
DdeI	CTNAG	2 cut(s)	90, 362
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	123, 162
FalI	AAGNNNNNCTT	6 cut(s)	99, 131, 133, 165, 218, 250
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	2 cut(s)	119, 158
Fnu4HI	GCNGC	4 cut(s)	192, 230, 517, 545
FokI	GGATG	2 cut(s)	123, 491
Fsp4HI	GCNGC	4 cut(s)	192, 230, 517, 545
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	4 cut(s)	192, 230, 517, 545
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	123, 162
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	53, 323, 476
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	29, 216, 398, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	90, 362
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	123, 162
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	82, 230, 292, 434, 461
Lsp1109I	GCAGC	3 cut(s)	241, 528, 531
LweI	GCATC	2 cut(s)	29, 375
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	462
MboII	GAAGA	3 cut(s)	170, 226, 264
MluCI	AATT	8 cut(s)	15, 318, 411, 467, 527, 538, 563, 587
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	319, 397, 528
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	140, 492, 605
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	89, 519
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	123, 162
NlaIV	GGNNCC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	437
PciI	ACATGT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	193, 231, 518, 546
Ppu21I	YACGTR	1 cut(s)	463
PscI	ACATGT	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	157, 571
RsaNI	GTAC	2 cut(s)	156, 570
RseI	CAYNNNNRTG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	140, 492, 605
SatI	GCNGC	4 cut(s)	192, 230, 517, 545
Sau96I	GGNCC	1 cut(s)	418
SetI	ASST	6 cut(s)	91, 234, 268, 337, 465, 492
SfaNI	GCATC	2 cut(s)	29, 375
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	8 cut(s)	15, 318, 411, 467, 527, 538, 563, 587
SsiI	CCGC	2 cut(s)	192, 519
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	132
TasI	AATT	8 cut(s)	15, 318, 411, 467, 527, 538, 563, 587
TatI	WGTACW	1 cut(s)	155
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	140, 492, 605
Tru9I	TTAA	3 cut(s)	140, 492, 605
TseI	GCWGC	3 cut(s)	229, 516, 544
TspDTI	ATGAA	2 cut(s)	300, 495
TspGWI	ACGGA	1 cut(s)	176
XapI	RAATTY	5 cut(s)	318, 467, 527, 538, 563
XceI	RCATGY	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.