Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004461

Physical Location & Seq

Genomic Coordinates Forward (+)

61495036 .. 61495906

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0443300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCCAAGAGAAGCCCAAACCTAACTGGGCCACCAGCACACAACGAACAAGAGGTATGCCTTGATCTTCTTCACTCTACTACTACTACTACTACTCTTGATGTTTACTTGGCCTTGCTCCACTCCCAACCCTCAATTCCACTCAAATCTAGAAACACCCATCTTGAGAGGCCCAAAGTAGTGAGTAATGTTGAGGATGCCTTGAAGGTGTTCCATGAAATGCTTCAAAGGCGTCCACTTCCTTTCATTGTCCGTTTCACTCAAATATTGGGTCAACTTGTGAAAATGAAGCATTATTCGGATGTCATTGCTTTGTATGATCAAATTTTCTTTGTCTTGGCACAATTCTTCAAGTTTGGTCTTGAACCAAATGTCACCACCTTCACCACTTTGATCAATGGCTTCCTTCTCTGCCATAGAGTTGCCGAGGCTACACAAATTTTTAGAAAAATGGTGGACGGAGGTAATTGTAAGCCTGATGTGGTTACTTTCGGCACATTGATAAAGGCCTTGTGCATCAAGGGCAACAATACTGCAGCTATTCAATTGCTCAGGAAGATGGAACAATCTCCAGATTGTAAACCCAACTTAGTTGTCTATAGCACCATCATTGACAGTCTTTGTAAAGGACACGCTAATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AI-2E_transport

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

9.18

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	120 - 152	2.6e-08	PPR repeat
PPR_2	PF13041	123 - 172	1.7e-12	PPR repeat family
PPR_3	PF13812	147 - 205	4.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	156 - 188	1.2e-10	PPR repeat
PPR_2	PF13041	159 - 209	7.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55960
fragaria_vesca	FvH4_3g42400 FvH4_6g51530
malus_domestica	MD11G1036300.v1.1 MD17G1026100.v1.1
prunus_persica	Prupe.3G292600_v2.0.a1 Prupe.6G027100_v2.0.a1
pyrus_communis	pycom17g02120
rosa_chinensis	RchiOBHm_Chr5g0075891
rosa_laevigata	RLG00000022165 RLG00000036599
rosa_multiflora	Rmu_co8453001.1_g000001 Rmu_co8486383.1_g000001 Rmu_sc0002652.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005790 Rroxscaffold_2G00079170 Rroxscaffold_2G00128200 Rroxscaffold_2G00128210 Rroxscaffold_3G00229540 Rroxscaffold_5G00350470
rosa_rugosa	Rorug02G0565800 Rorug05G0443300
rosa_samantha	Rh2AG646000 Rh2BG656700 Rh2CG621800 Rh2DG670100 Rh5AG500200 Rh5BG521300 Rh5CG545400 Rh5DG534100
rosa_wichuraiana	Rw2G053050 Rw5G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	324, 438
AcyI	GRCGYC	1 cut(s)	232
AgsI	TTSAA	5 cut(s)	205, 227, 352, 365, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	539
AluI	AGCT	1 cut(s)	539
AoxI	GGCC	4 cut(s)	29, 111, 170, 507
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	324, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
Asp700I	GAANNNNTTC	2 cut(s)	209, 222
AspS9I	GGNCC	2 cut(s)	29, 171
AsuHPI	GGTGA	2 cut(s)	367, 376
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	3 cut(s)	168, 553, 614
BclI	TGATCA	2 cut(s)	319, 393
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	534, 598
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	29, 171
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	187, 525
BmuI	ACTGGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	202, 307
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	548
BshFI	GGCC	4 cut(s)	31, 113, 172, 509
BsnI	GGCC	4 cut(s)	31, 113, 172, 509
Bsp143I	GATC	3 cut(s)	64, 319, 393
BspANI	GGCC	4 cut(s)	31, 113, 172, 509
BspCNI	CTCAG	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	64, 319, 393
BssNI	GRCGYC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	617
BstACI	GRCGYC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	551, 589
BstF5I	GGATG	2 cut(s)	202, 307
BstKTI	GATC	3 cut(s)	67, 322, 396
BstMBI	GATC	3 cut(s)	64, 319, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 522
BstSFI	CTRYAG	2 cut(s)	534, 598
BstV1I	GCAGC	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	31, 113, 172, 509
BtsCI	GGATG	2 cut(s)	202, 307
Cfr13I	GGNCC	2 cut(s)	29, 171
CseI	GACGC	1 cut(s)	221
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	9 cut(s)	15, 31, 113, 172, 402, 431, 475, 509, 539
CviKI_1	RGCY	9 cut(s)	15, 31, 113, 172, 402, 431, 475, 509, 539
DdeI	CTNAG	2 cut(s)	551, 589
DpnI	GATC	3 cut(s)	66, 321, 395
DpnII	GATC	3 cut(s)	64, 319, 393
Eco147I	AGGCCT	1 cut(s)	509
FaeI	CATG	1 cut(s)	218
FaiI	YATR	5 cut(s)	58, 216, 318, 417, 600
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	2 cut(s)	319, 393
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	2 cut(s)	209, 314
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	31, 113, 172, 509
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HphI	GGTGA	2 cut(s)	367, 376
Hpy166II	GTNNAC	5 cut(s)	106, 236, 275, 457, 581
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	6 cut(s)	98, 150, 164, 362, 553, 572
Hpy8I	GTNNAC	5 cut(s)	106, 236, 275, 457, 581
HpyAV	CCTTC	3 cut(s)	199, 391, 416
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4V	TGCA	2 cut(s)	516, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 522
HpyF3I	CTNAG	2 cut(s)	551, 589
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	218
Ksp22I	TGATCA	2 cut(s)	319, 393
Kzo9I	GATC	3 cut(s)	64, 319, 393
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	5 cut(s)	12, 48, 489, 538, 585
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	2 cut(s)	187, 525
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	373, 484
MalI	GATC	3 cut(s)	66, 321, 395
MboI	GATC	3 cut(s)	64, 319, 393
MboII	GAAGA	4 cut(s)	59, 62, 340, 568
MfeI	CAATTG	1 cut(s)	545
MluCI	AATT	6 cut(s)	135, 324, 344, 438, 466, 545
MnlI	CCTC	6 cut(s)	46, 142, 162, 187, 421, 455
MroXI	GAANNNNTTC	2 cut(s)	209, 222
MunI	CAATTG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	229, 522
NdeII	GATC	3 cut(s)	64, 319, 393
NlaIII	CATG	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	509
PdmI	GAANNNNTTC	2 cut(s)	209, 222
PkrI	GCNGC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	29, 171
PstI	CTGCAG	1 cut(s)	538
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	64, 319, 393
Sau96I	GGNCC	2 cut(s)	29, 171
SetI	ASST	6 cut(s)	24, 57, 210, 383, 466, 541
SfaNI	GCATC	2 cut(s)	187, 525
SfcI	CTRYAG	2 cut(s)	534, 598
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	6 cut(s)	135, 324, 344, 438, 466, 545
SseBI	AGGCCT	1 cut(s)	509
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	509
TaaI	ACNGT	1 cut(s)	617
TasI	AATT	6 cut(s)	135, 324, 344, 438, 466, 545
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	231, 235, 302
TspGWI	ACGGA	2 cut(s)	242, 474
XapI	RAATTY	2 cut(s)	324, 438
XbaI	TCTAGA	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	209, 222
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.