Rroxscaffold_2G00128200

AI-2E family transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004461
Physical Location & Seq
Forward (+)
63819746 .. 63825952
6207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128200.1

Sequence Viewer

Length: 456 bp
ATGGTTCATACTGAAATTCGGGAGGATATACCTAGTCATAGTGAATATCTCACGGGACTTAGCATCATTGATGGAATGACATTGTTTCCATCTGCATTGGAGGGTGCAATTATGGGCCTGCTCATAACCACGGTTGTGATTGCTCTCAAGGATTTATACGTGGAATTTGTTCTGGATGAACCCAAGGTTAAAGATGAGTGTTTGATACTTGGCAGCGAGTGGAGAATTTTGGAGGAATTTGCTGCTGAAACGATTGGGATATTAAAGTTTCGGGCCTTGGTGCGTTGGTCGGAATCGGGGGATTCCAAGTGCTCGCTTTCATCGCCGTTGGCTGGATTCGAGTTTGCTCGGATTATGTCGAAGGCGGGCGGGGGAGGGGCAGATGAAGATTGGGGTGTTCTCGTGATGGGCGGGAAGAATTCTGCTGCTGTTCCCTGTGCCGTGGAGGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AI-2E_transport

Protein Analysis

151

Amino Acids

16.29

Weight (kDa)

4.52

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 365, 369, 411
AcsI RAATTY 5 cut(s) 15, 164, 225, 236, 418
AfiI CCNNNNNNNGG 2 cut(s) 332, 447
AleI CACNNNNGTG 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 314
AoxI GGCC 2 cut(s) 115, 273
ApeKI GCWGC 3 cut(s) 213, 242, 425
ApoI RAATTY 5 cut(s) 15, 164, 225, 236, 418
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 115, 273
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 225, 229, 412
BccI CCATC 3 cut(s) 65, 97, 400
BceAI ACGGC 2 cut(s) 310, 425
BfaI CTAG 1 cut(s) 33
BisI GCNGC 3 cut(s) 214, 243, 426
BlsI GCNGC 3 cut(s) 215, 244, 427
BmgT120I GGNCC 2 cut(s) 115, 273
BmsI GCATC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 4 cut(s) 129, 183, 276, 441
BsaXI ACNNNNNCTCC 1 cut(s) 437
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 447
BseDI CCNNGG 4 cut(s) 129, 183, 276, 441
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 332, 447
BseXI GCAGC 3 cut(s) 225, 229, 412
BshFI GGCC 2 cut(s) 117, 275
BsiHKAI GWGCWC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 332, 447
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 117, 275
Bsp1286I GDGCHC 1 cut(s) 314
BspACI CCGC 3 cut(s) 365, 369, 411
BspANI GGCC 2 cut(s) 117, 275
BssECI CCNNGG 4 cut(s) 129, 183, 276, 441
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 183, 276
Bst2BI CACGAG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 119, 314, 367
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 2 cut(s) 129, 441
BstF5I GGATG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 225, 229, 412
BsuRI GGCC 2 cut(s) 117, 275
BtgI CCRYGG 2 cut(s) 129, 441
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 119, 314, 367
Cfr13I GGNCC 2 cut(s) 115, 273
CviJI RGCY 3 cut(s) 117, 275, 332
CviKI_1 RGCY 3 cut(s) 117, 275, 332
DdeI CTNAG 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 183, 276
EcoRI GAATTC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 183, 276
ErhI CCWWGG 2 cut(s) 183, 276
FaiI YATR 7 cut(s) 9, 29, 39, 113, 125, 157, 356
FaqI GGGAC 1 cut(s) 69
FauI CCCGC 3 cut(s) 358, 362, 404
Fnu4HI GCNGC 3 cut(s) 214, 243, 426
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 214, 243, 426
FspBI CTAG 1 cut(s) 33
GluI GCNGC 3 cut(s) 214, 243, 426
HaeIII GGCC 2 cut(s) 117, 275
HinfI GANTC 3 cut(s) 293, 302, 336
Hpy188I TCNGA 2 cut(s) 292, 351
Hpy188III TCNNGA 3 cut(s) 20, 173, 403
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 95, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 159
LpnPI CCDG 4 cut(s) 131, 158, 318, 448
Lsp1109I GCAGC 3 cut(s) 225, 229, 412
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 159
MboII GAAGA 2 cut(s) 398, 427
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 6 cut(s) 15, 108, 164, 225, 236, 418
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 5 cut(s) 16, 94, 226, 368, 439
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 189, 263
MslI CAYNNNNRTG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 293, 302, 336
PkrI GCNGC 3 cut(s) 215, 244, 427
Ppu21I YACGTR 1 cut(s) 160
PspPI GGNCC 2 cut(s) 115, 273
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 189, 263
SatI GCNGC 3 cut(s) 214, 243, 426
Sau96I GGNCC 2 cut(s) 115, 273
SduI GDGCHC 1 cut(s) 314
SetI ASST 3 cut(s) 34, 162, 189
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 6 cut(s) 15, 108, 164, 225, 236, 418
SsiI CCGC 3 cut(s) 365, 369, 411
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 183, 276
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 339, 359
TasI AATT 6 cut(s) 15, 108, 164, 225, 236, 418
TfiI GAWTC 3 cut(s) 293, 302, 336
Tru1I TTAA 2 cut(s) 189, 263
Tru9I TTAA 2 cut(s) 189, 263
TseI GCWGC 3 cut(s) 213, 242, 425
TspDTI ATGAA 3 cut(s) 192, 309, 399
XapI RAATTY 5 cut(s) 15, 164, 225, 236, 418
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.