Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002682.1

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

13288 .. 22607

Gene Structure 9320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4779 bp

atgagatggcgtggcctcagaagcaccctgtttttcctcaaagtcttctcctttttgctgtgcttttcagtttccggcgacaaaaaccgctggtcggagaagtcggttctgctcgagctgaagacctcggtgtcggacccagatggggttctgtcgacgtgggcccacggcagctctgatcaccactgttcctggttcggggtctcctgcgactcgaaatccaaggttgtctcgctcagcgttgccgggaggagtgaaaataaaggaggtaactttgaagcttttacttgctctgagactgtaaaatttcaatttcagttcgatgggtttggggcatggaggaggagtggtgaggttagtggtgggaaattaggtggaaagctttcacctttggttgggaaacttacagagcttagagttttatcgctgccgtttaatgaacttagtggtgagattcccgaggaggtttgggggttggagaaacttgaagtgcttgatcttgagggtaatttgttggaggggaagttgccgagttggttctcgggtttgagaaagttgagggttttcaatgttgggtttaataggattggtggggaggttccggttttgctttcgaaatgtagggatttggaggtcttgagtttagctggaaatgaagtgagtggagccatccctgtgttttttggtggttttgcaaagttgcaggggctttatttggctcaaaataggttaaatggatctattccggccaaatttggaaggtcttgtttgaatcttgagcattttgatgtgtcggggaatttccttgttgggaagattccgcctactttggggagttgtctgcggttacggacgctacttttgttttcaaatactctggatggtggcattcctcgtgaacttggtaagattcgggggcttgaagttctggatgtgtctagaaatagccttagcggtccaatccccgctgagctcggacagtgtgtcaatttgtcggtacttgtcctgtcgaatctttttaatccgttgccaatcaatcagaatgcaaatggagattcatcggttaactcatataaaggagtggatgatgattacaatttttatgaaggctccattccccaggagattacaggcttaccaaatttgagaatagtttgggcgccaagggcaaccctcgaaggccagtttccgagcaattggggtggttgtgagaacttggaaatggtgaacttggctcagaaccttttcactggaggagtgattggagtgtttgatagctgcaagaagctgcagtatctgaatttgagctcaaataagctgagtgggaagcttgatgacaaactcccagttccttgtatgaccgttttcagtgtcagtgggaacctcttgtctggacccatccccacatttaatttcgcagtgtgcccccacgtgccccgaaattcagatcttgtccgagtccagaatccatcatttgcatatcaagttctctttacttgcagaacttatcttgacacccatttaccactttttggtgctagtttcacattgattcacgattttagtggtaacaacttcactggtccaatccaacaccttcctcttgcacctgagaggttggggaagcgaactgtttatgcatttcttgctggtgggaacaagttcactggatcatttactgaaaccttaaaaggaaagtgtgatggcttatatggaatgatatttaatgttagcaacaacaagttatcaggccacattcctttcaagattggcatgatgtgcagatcactcagactcttggatgcctctggaaatctcttatctgggtcaatacctccagatcttggggatgtgaagcctcttgtctttcttgacttgagcaggaaccagttgcagggtcaaattcccgcaggtatcagtaatttgaagtatctcaagtatctatccttggctaataacaaccttactggtacgattcctgctagctttgtggagttacgctcccttgaagtgttaaagctatcttcaaactctctttctggtgatatcccgcaaggtcttgttaagttgaaaaacctaactatttttatgcttgacaacaataagctctctggccgcatcccttctggtttgactaatgtgagatccctgtctacatttaatgtctcatataataacctgtctggttcatttccattgaacaataatatgatgaactgtagcggtgtccttggaaaccctttcgttaatcaatgccgcattgtttccctcgctgcgccatcctcagctcagccgggtagctctgccaattcaccccctgatcctcagtcagcaagtgctcctggaaaggatggaataaactcaattgagattgcatccatagtatctgcatcagctatcgtgttggttctcttcactcttgttatcctcttcttttacacaagaaaatggattccagattccagagttcagggttttgaaaataaagaaattacaattttcacggaaattggggcaccattgacgtttgagaatatggttcaagcaacagggaattttaatgccagtaactacattggcagcggaggatttggggcaacttacaaagcagaaattgctccaggaaccataatagctgtgaagaggcttgccgttggaaggtttcacggtgttcaacagttccatgctgagattaagaccctcggaagggtgagacaccccaacctggtaactttaataggttaccatgccagtgaaaccgagatgctactcatatataattatttaccaggagggaatttggaaaattttattcaggaaagatctagaagatcttttacttggaagattctccacaagattgctctggatattgcccatgcactttcttatctgcatgacgagtgtatcccgcgtgtcctacaccgtgatgtcaagccaagcaatatactgttagatgataacttgaatgcttatttgtctgactttggattgtctaggctgctgggaacttctgaaacgcatgctacaactggtgttgcaggaacttttgggtacgtagcacccgagtatgctatgacctgtcgtgtgtctgagaaggctgatgtttacagttacggtgttgtgctgcttgaattgatttctgataagaaagccctggacccatcattttcttcacatggaaatggtttcaacattgtttcttgggcgtgcatgctgttaagaatgggtcgggctaaggacgtattcatggaaggactatgggaggcaggacccgaagatgatctggttgagatgctgtacttggctgtcaaatgtaaagcagaaattgccgaaagcatagagaaaggtgtcatctcggctaaatcctcaaaggactgggcggtgaggaatagaagagcaggggaagaacatactgtggttgtgcgttcaggagagaaaccgaggcatggtggtattggggcagtcatcagagacgacttaggtacgcgcttagctgctattgcactacccttcctgtttgttcgatcagctatacaagtggaagctgaggctcctagtgcttattcaccaaggattggctggtgcggcgacggcggctcgcggcttgcaggagggaggccggaggcatctcggactgttctgggcaacgttcgaggtcgaaggaggtcagggttgcaggttctgggcagcaacccgacctgcaacggcaggttttctgggcagcgctacaacgacgtcgtcgacaactccaccgactacagacctctccgcccgacccctggcgtccttccgacaacccccgccgctctgtcgcgccccgagctgagctgcagcagcgccgtccgcaccttagcgaaagacagcgaattaatgttgttctccatgcaattcaaccaagaattagggtttactaatagtcctacaccgccagccattgaccttctaagccacaattcggagatgacgtcgtgtaatggattaatctgtctttataattatgatgccgctgtccctgttggtatatttaatccatgcactcgagagttcactactcttccagtttctcaatatgcttcaatatccggttccgactctgggcggacgtacagtctattatatcgggttcagtcctcttacaaacgagtacaagttaatcttcaatcattttcatggtttgataatgtttttttaagagagtttcattggccccaaaagcgtatatttaagcaagtctccaagaatttaattgtgctcaaagaaaccctaaagaaaaaaaaaaccttgagagccgtgtggtccttcttgcctgtccggctgtgcctcggcgctggcgctggccactggcctcaccggtgcacggtgcgtgtggctggacgggtggtctggttcgttggcatgcttgatgctcagtggctggggttgggaagctgcttttctcgtcgtgctcatgtgcaggaagcggctgaacgtggatcgcgttggtggctaccaggtgggatcgatgttgtttggatctatgatgctgcagttggactgacggcgaagctaccatgggtaggtgggagatcagagatgggaggcggaaggacaggctggttgggaacggttgggatcgtaggtcggtccagtttggttctgatattcggagtgaggctgtgtggggctggggcagtggagtgggtgggtagtcttggccggtggttcgacgacggagatggctcgcaaatggtcgaggtccgacatcggtggcagagcagcgcgtatggtggcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1592

Amino Acids

173.78

Weight (kDa)

9.03

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 71	1.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	132 - 218	8.4e-08	Leucine-rich repeat region
LRR_14	PF23598	595 - 721	3.7e-10	Leucine-rich repeat region
LRR_8	PF13855	624 - 679	6.1e-09	Leucine rich repeat
Pkinase	PF00069	855 - 1053	2.8e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	856 - 1049	1.3e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3996
AasI	GACNNNNNNGTC	1 cut(s)	130
AatII	GACGTC	2 cut(s)	3741, 3971
Acc36I	ACCTGC	4 cut(s)	1901, 3670, 3702, 3710
AccB1I	GGYRCC	2 cut(s)	1159, 2515
AccB7I	CCANNNNNTGG	3 cut(s)	1532, 1844, 3578
AccBSI	CCGCTC	1 cut(s)	3809
AccI	GTMKAC	3 cut(s)	155, 2153, 3744
AccII	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
AclI	AACGTT	1 cut(s)	3651
AclWI	GGATC	8 cut(s)	745, 1678, 2139, 2315, 4483, 4508, 4523, 4622
AcoI	YGGCCR	4 cut(s)	747, 2113, 4339, 4696
AcuI	CTGAAG	1 cut(s)	140
AcvI	CACGTG	1 cut(s)	1432
AcyI	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
AfaI	GTAC	7 cut(s)	999, 1972, 3056, 3302, 3487, 4109, 4149
AfeI	AGCGCT	1 cut(s)	3728
AgeI	ACCGGT	1 cut(s)	4353
AhdI	GACNNNNNGTC	3 cut(s)	983, 4110, 4382
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	9 cut(s)	191, 1119, 2341, 2620, 2724, 2788, 3156, 3781, 4492
Alw21I	GWGCWC	6 cut(s)	975, 1310, 2341, 4257, 4361, 4450
Alw26I	GTCTC	7 cut(s)	208, 235, 290, 2170, 2707, 3468, 4240
Alw44I	GTGCAC	1 cut(s)	4357
AlwI	GGATC	8 cut(s)	745, 1678, 2139, 2315, 4483, 4508, 4523, 4622
AlwNI	CAGNNNCTG	3 cut(s)	1297, 3685, 4417
Ama87I	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
Aor51HI	AGCGCT	1 cut(s)	3728
ApaI	GGGCCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	4357
ArsI	GACNNNNNNTTYG	2 cut(s)	844, 876
AseI	ATTAAT	2 cut(s)	3872, 3983
AsiGI	ACCGGT	1 cut(s)	4353
Asp700I	GAANNNNTTC	3 cut(s)	382, 1244, 1661
AspLEI	GCGC	9 cut(s)	1162, 2278, 3492, 3729, 3819, 3842, 4331, 4337, 4763
AsuC2I	CCSGG	2 cut(s)	247, 2295
AsuII	TTCGAA	1 cut(s)	614
AsuNHI	GCTAGC	1 cut(s)	1982
AvaI	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
AvaII	GGWCC	9 cut(s)	136, 956, 1394, 1583, 3160, 3272, 4299, 4626, 4738
BaeGI	GKGCMC	5 cut(s)	166, 1427, 1437, 2518, 4361
BaeI	ACNNNNGTAYC	2 cut(s)	2890, 2923
BalI	TGGCCA	1 cut(s)	4341
BanI	GGYRCC	2 cut(s)	1159, 2515
BanII	GRGCYC	3 cut(s)	166, 975, 1310
BarI	GAAGNNNNNNTAC	2 cut(s)	2821, 2853
BauI	CACGAG	1 cut(s)	894
BbrPI	CACGTG	1 cut(s)	1432
BbsI	GAAGAC	2 cut(s)	37, 128
Bbv12I	GWGCWC	6 cut(s)	975, 1310, 2341, 4257, 4361, 4450
BbvCI	CCTCAGC	2 cut(s)	2284, 3549
BceAI	ACGGC	8 cut(s)	184, 415, 2636, 3610, 3724, 3827, 4277, 4557
BciT130I	CCWGG	9 cut(s)	193, 1121, 2343, 2622, 2726, 2790, 3158, 3783, 4494
BciVI	GTATCC	1 cut(s)	2918
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	2 cut(s)	247, 2295
BcoDI	GTCTC	7 cut(s)	208, 235, 290, 2170, 2707, 3468, 4240
BfaI	CTAG	6 cut(s)	939, 1539, 1983, 2826, 2997, 3558
BfmI	CTRYAG	5 cut(s)	1289, 2218, 3760, 3832, 4527
BfoI	RGCGCY	5 cut(s)	1163, 3730, 3843, 4332, 4338
BfuAI	ACCTGC	4 cut(s)	1901, 3670, 3702, 3710
BfuI	GTATCC	1 cut(s)	2918
BglI	GCCNNNNNGGC	1 cut(s)	4315
BglII	AGATCT	4 cut(s)	1447, 1840, 2822, 2831
BlpI	GCTNAGC	5 cut(s)	236, 969, 2289, 3493, 3827
Bme18I	GGWCC	9 cut(s)	136, 956, 1394, 1583, 3160, 3272, 4299, 4626, 4738
BmeRI	GACNNNNNGTC	3 cut(s)	983, 4110, 4382
BmeT110I	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
BmgBI	CACGTC	1 cut(s)	159
BmrI	ACTGGG	2 cut(s)	1340, 3388
BmtI	GCTAGC	1 cut(s)	1986
BmuI	ACTGGG	2 cut(s)	1340, 3388
BpiI	GAAGAC	2 cut(s)	37, 128
BplI	GAGNNNNNCTC	2 cut(s)	1985, 2017
BpmI	CTGGAG	3 cut(s)	1272, 1821, 2604
Bpu10I	CCTNAGC	5 cut(s)	950, 2284, 3237, 3549, 3853
Bpu1102I	GCTNAGC	5 cut(s)	236, 969, 2289, 3493, 3827
Bpu14I	TTCGAA	1 cut(s)	614
BpuEI	CTTGAG	6 cut(s)	521, 658, 797, 1897, 1919, 4306
BpuMI	CCSGG	2 cut(s)	247, 2295
Bsa29I	ATCGAT	1 cut(s)	4503
BsaAI	YACGTR	2 cut(s)	1432, 3058
BsaHI	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
BsaI	GGTCTC	1 cut(s)	208
BsaWI	WCCGGW	3 cut(s)	601, 4085, 4353
BsaXI	ACNNNNNCTCC	8 cut(s)	331, 334, 361, 364, 509, 539, 3953, 3983
Bse118I	RCCGGY	2 cut(s)	4353, 4698
BseBI	CCWGG	9 cut(s)	193, 1121, 2343, 2622, 2726, 2790, 3158, 3783, 4494
BseCI	ATCGAT	1 cut(s)	4503
BseRI	GAGGAG	5 cut(s)	265, 355, 358, 476, 1269
BseSI	GKGCMC	5 cut(s)	166, 1427, 1437, 2518, 4361
BseYI	CCCAGC	3 cut(s)	3004, 4417, 4667
BsgI	GTGCAG	2 cut(s)	1801, 4475
Bsh1236I	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
BshNI	GGYRCC	2 cut(s)	1159, 2515
BshTI	ACCGGT	1 cut(s)	4353
BshVI	ATCGAT	1 cut(s)	4503
BsiHKAI	GWGCWC	6 cut(s)	975, 1310, 2341, 4257, 4361, 4450
BsiHKCI	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
BslFI	GGGAC	1 cut(s)	3998
BsmAI	GTCTC	7 cut(s)	208, 235, 290, 2170, 2707, 3468, 4240
BsmBI	CGTCTC	1 cut(s)	3468
BsmFI	GGGAC	1 cut(s)	3998
BsmI	GAATGC	3 cut(s)	888, 1048, 2974
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
Bsp119I	TTCGAA	1 cut(s)	614
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1720I	GCTNAGC	5 cut(s)	236, 969, 2289, 3493, 3827
Bsp19I	CCATGG	1 cut(s)	4553
BspDI	ATCGAT	1 cut(s)	4503
BspFNI	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
BspMAI	CTGCAG	3 cut(s)	1293, 3836, 4531
BspMI	ACCTGC	4 cut(s)	1901, 3670, 3702, 3710
BspOI	GCTAGC	1 cut(s)	1986
BspPI	GGATC	8 cut(s)	745, 1678, 2139, 2315, 4483, 4508, 4523, 4622
BspQI	GCTCTTC	1 cut(s)	3391
BspT104I	TTCGAA	1 cut(s)	614
BspT107I	GGYRCC	2 cut(s)	1159, 2515
BspTNI	GGTCTC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	3809
BsrFI	RCCGGY	2 cut(s)	4353, 4698
BssAI	RCCGGY	2 cut(s)	4353, 4698
BssNI	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	6 cut(s)	222, 1163, 1947, 2230, 3572, 4553
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	9 cut(s)	193, 1121, 2343, 2622, 2726, 2790, 3158, 3783, 4494
Bst6I	CTCTTC	5 cut(s)	2417, 2435, 2636, 3391, 4062
BstACI	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
BstAPI	GCANNNNNTGC	4 cut(s)	1646, 1779, 2615, 3329
BstBAI	YACGTR	2 cut(s)	1432, 3058
BstBI	TTCGAA	1 cut(s)	614
BstDSI	CCRYGG	2 cut(s)	166, 4553
BstEII	GGTNACC	1 cut(s)	2741
BstFNI	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
BstH2I	RGCGCY	5 cut(s)	1163, 3730, 3843, 4332, 4338
BstHHI	GCGC	9 cut(s)	1162, 2278, 3492, 3729, 3819, 3842, 4331, 4337, 4763
BstMAI	GTCTC	7 cut(s)	208, 235, 290, 2170, 2707, 3468, 4240
BstNI	CCWGG	9 cut(s)	193, 1121, 2343, 2622, 2726, 2790, 3158, 3783, 4494
BstNSI	RCATGY	3 cut(s)	3026, 3217, 4402
BstPI	GGTNACC	1 cut(s)	2741
BstSFI	CTRYAG	5 cut(s)	1289, 2218, 3760, 3832, 4527
BstSLI	GKGCMC	5 cut(s)	166, 1427, 1437, 2518, 4361
BstSNI	TACGTA	1 cut(s)	3058
BstUI	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
BstV2I	GAAGAC	2 cut(s)	37, 128
BstX2I	RGATCY	7 cut(s)	737, 1447, 1840, 2144, 2822, 2831, 4515
BstYI	RGATCY	7 cut(s)	737, 1447, 1840, 2144, 2822, 2831, 4515
Bsu15I	ATCGAT	1 cut(s)	4503
BsuI	GTATCC	1 cut(s)	2918
BsuTUI	ATCGAT	1 cut(s)	4503
BtgI	CCRYGG	2 cut(s)	166, 4553
BtrI	CACGTC	1 cut(s)	159
BtsI	GCAGTG	2 cut(s)	1425, 4680
BveI	ACCTGC	4 cut(s)	1901, 3670, 3702, 3710
CaiI	CAGNNNCTG	3 cut(s)	1297, 3685, 4417
CfoI	GCGC	9 cut(s)	1162, 2278, 3492, 3729, 3819, 3842, 4331, 4337, 4763
Cfr10I	RCCGGY	2 cut(s)	4353, 4698
ClaI	ATCGAT	1 cut(s)	4503
CseI	GACGC	2 cut(s)	862, 3775
CsiI	ACCWGGT	2 cut(s)	2724, 4492
Csp6I	GTAC	7 cut(s)	998, 1971, 3055, 3301, 3486, 4108, 4148
CspAI	ACCGGT	1 cut(s)	4353
CspCI	CAANNNNNGTGG	2 cut(s)	1183, 1218
CviQI	GTAC	7 cut(s)	998, 1971, 3055, 3301, 3486, 4108, 4148
DinI	GGCGCC	1 cut(s)	1161
DrdI	GACNNNNNNGTC	1 cut(s)	130
DriI	GACNNNNNGTC	3 cut(s)	983, 4110, 4382
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	4 cut(s)	747, 2113, 4339, 4696
Eam1104I	CTCTTC	5 cut(s)	2417, 2435, 2636, 3391, 4062
Eam1105I	GACNNNNNGTC	3 cut(s)	983, 4110, 4382
EarI	CTCTTC	5 cut(s)	2417, 2435, 2636, 3391, 4062
EciI	GGCGGA	4 cut(s)	810, 3761, 4117, 4599
Ecl136II	GAGCTC	2 cut(s)	973, 1308
Eco105I	TACGTA	1 cut(s)	3058
Eco130I	CCWWGG	6 cut(s)	222, 1163, 1947, 2230, 3572, 4553
Eco24I	GRGCYC	3 cut(s)	166, 975, 1310
Eco31I	GGTCTC	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	2047
Eco47I	GGWCC	9 cut(s)	136, 956, 1394, 1583, 3160, 3272, 4299, 4626, 4738
Eco47III	AGCGCT	1 cut(s)	3728
Eco53kI	GAGCTC	2 cut(s)	973, 1308
Eco57I	CTGAAG	1 cut(s)	140
Eco72I	CACGTG	1 cut(s)	1432
Eco88I	CYCGRG	6 cut(s)	113, 458, 541, 3065, 3821, 4041
Eco91I	GGTNACC	1 cut(s)	2741
EcoICRI	GAGCTC	2 cut(s)	973, 1308
EcoO109I	RGGNCCY	1 cut(s)	3272
EcoO65I	GGTNACC	1 cut(s)	2741
EcoRII	CCWGG	9 cut(s)	191, 1119, 2341, 2620, 2724, 2788, 3156, 3781, 4492
EcoRV	GATATC	1 cut(s)	2047
EcoT14I	CCWWGG	6 cut(s)	222, 1163, 1947, 2230, 3572, 4553
EcoT22I	ATGCAT	1 cut(s)	1642
EcoT38I	GRGCYC	3 cut(s)	166, 975, 1310
EgeI	GGCGCC	1 cut(s)	1161
EheI	GGCGCC	1 cut(s)	1161
ErhI	CCWWGG	6 cut(s)	222, 1163, 1947, 2230, 3572, 4553
Esp3I	CGTCTC	1 cut(s)	3468
FalI	AAGNNNNNCTT	2 cut(s)	4143, 4175
FaqI	GGGAC	1 cut(s)	3998
FauI	CCCGC	5 cut(s)	973, 1915, 2058, 2919, 3811
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	3 cut(s)	155, 2153, 3744
FriOI	GRGCYC	3 cut(s)	166, 975, 1310
FspBI	CTAG	6 cut(s)	939, 1539, 1983, 2826, 2997, 3558
GlaI	GCGC	9 cut(s)	1161, 2277, 3491, 3728, 3818, 3841, 4330, 4336, 4762
GsaI	CCCAGC	3 cut(s)	3008, 4421, 4671
GsuI	CTGGAG	3 cut(s)	1272, 1821, 2604
HaeII	RGCGCY	5 cut(s)	1163, 3730, 3843, 4332, 4338
HgaI	GACGC	2 cut(s)	862, 3775
HhaI	GCGC	9 cut(s)	1162, 2278, 3492, 3729, 3819, 3842, 4331, 4337, 4763
Hin1I	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
Hin6I	GCGC	9 cut(s)	1160, 2276, 3490, 3727, 3817, 3840, 4329, 4335, 4761
HinP1I	GCGC	9 cut(s)	1160, 2276, 3490, 3727, 3817, 3840, 4329, 4335, 4761
HincII	GTYRAC	3 cut(s)	156, 1066, 3745
HindII	GTYRAC	3 cut(s)	156, 1066, 3745
HindIII	AAGCTT	3 cut(s)	279, 380, 1328
HpaI	GTTAAC	1 cut(s)	1066
Hpy99I	CGWCG	9 cut(s)	160, 3596, 3740, 3743, 3746, 3973, 4446, 4712, 4715
Hsp92I	GRCGYC	4 cut(s)	1160, 3738, 3786, 3968
HspAI	GCGC	9 cut(s)	1160, 2276, 3490, 3727, 3817, 3840, 4329, 4335, 4761
KasI	GGCGCC	1 cut(s)	1159
Ksp22I	TGATCA	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	1066
LguI	GCTCTTC	1 cut(s)	3391
LmnI	GCTCC	6 cut(s)	665, 1115, 2006, 2344, 2623, 3559
MabI	ACCWGGT	2 cut(s)	2724, 4492
MaeI	CTAG	6 cut(s)	939, 1539, 1983, 2826, 2997, 3558
MaeIII	GTNAC	8 cut(s)	269, 846, 1568, 1995, 2567, 2728, 2741, 3113
MbiI	CCGCTC	1 cut(s)	3809
MfeI	CAATTG	2 cut(s)	1195, 2364
MflI	RGATCY	7 cut(s)	737, 1447, 1840, 2144, 2822, 2831, 4515
MlsI	TGGCCA	1 cut(s)	4341
MluNI	TGGCCA	1 cut(s)	4341
Mly113I	GGCGCC	1 cut(s)	1160
MlyI	GAGTC	4 cut(s)	206, 1467, 1788, 4088
Mox20I	TGGCCA	1 cut(s)	4341
Mph1103I	ATGCAT	1 cut(s)	1642
MroXI	GAANNNNTTC	3 cut(s)	382, 1244, 1661
MscI	TGGCCA	1 cut(s)	4341
MslI	CAYNNNNRTG	6 cut(s)	674, 786, 2751, 2928, 3183, 4171
Msp20I	TGGCCA	1 cut(s)	4341
MspA1I	CMGCKG	4 cut(s)	90, 968, 2583, 4010
MunI	CAATTG	2 cut(s)	1195, 2364
Mva1269I	GAATGC	3 cut(s)	888, 1048, 2974
MvaI	CCWGG	9 cut(s)	193, 1121, 2343, 2622, 2726, 2790, 3158, 3783, 4494
MvnI	CGCG	6 cut(s)	2914, 3490, 3604, 3817, 4480, 4763
NarI	GGCGCC	1 cut(s)	1160
NciI	CCSGG	2 cut(s)	247, 2295
NcoI	CCATGG	1 cut(s)	4553
NheI	GCTAGC	1 cut(s)	1982
NmeAIII	GCCGAG	3 cut(s)	555, 3338, 4305
NsiI	ATGCAT	1 cut(s)	1642
NspI	RCATGY	3 cut(s)	3026, 3217, 4402
NspV	TTCGAA	1 cut(s)	614
PaeI	GCATGC	3 cut(s)	3026, 3217, 4402
PaeR7I	CTCGAG	2 cut(s)	113, 4041
PciSI	GCTCTTC	1 cut(s)	3391
PcsI	WCGNNNNNNNCGW	4 cut(s)	3063, 3741, 3965, 4477
PctI	GAATGC	3 cut(s)	888, 1048, 2974
PdmI	GAANNNNTTC	3 cut(s)	382, 1244, 1661
PflFI	GACNNNGTC	1 cut(s)	3740
PflMI	CCANNNNNTGG	3 cut(s)	1532, 1844, 3578
PfoI	TCCNGGA	2 cut(s)	2341, 2620
PinAI	ACCGGT	1 cut(s)	4353
PleI	GAGTC	4 cut(s)	206, 1466, 1788, 4088
PluTI	GGCGCC	1 cut(s)	1163
PmaCI	CACGTG	1 cut(s)	1432
PmlI	CACGTG	1 cut(s)	1432
PpsI	GAGTC	4 cut(s)	206, 1466, 1788, 4088
Ppu21I	YACGTR	2 cut(s)	1432, 3058
PpuMI	RGGWCCY	1 cut(s)	3272
PshBI	ATTAAT	2 cut(s)	3872, 3983
PsiI	TTATAA	1 cut(s)	3996
Psp124BI	GAGCTC	2 cut(s)	975, 1310
Psp1406I	AACGTT	1 cut(s)	3651
Psp5II	RGGWCCY	1 cut(s)	3272
Psp6I	CCWGG	9 cut(s)	191, 1119, 2341, 2620, 2724, 2788, 3156, 3781, 4492
PspCI	CACGTG	1 cut(s)	1432
PspEI	GGTNACC	1 cut(s)	2741
PspFI	CCCAGC	3 cut(s)	3004, 4417, 4667
PspGI	CCWGG	9 cut(s)	191, 1119, 2341, 2620, 2724, 2788, 3156, 3781, 4492
PspOMI	GGGCCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	3272
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	3 cut(s)	1293, 3836, 4531
PstNI	CAGNNNCTG	3 cut(s)	1297, 3685, 4417
PsuI	RGATCY	7 cut(s)	737, 1447, 1840, 2144, 2822, 2831, 4515
PsyI	GACNNNGTC	1 cut(s)	3740
RsaI	GTAC	7 cut(s)	999, 1972, 3056, 3302, 3487, 4109, 4149
RsaNI	GTAC	7 cut(s)	998, 1971, 3055, 3301, 3486, 4108, 4148
RseI	CAYNNNNRTG	6 cut(s)	674, 786, 2751, 2928, 3183, 4171
SacI	GAGCTC	2 cut(s)	975, 1310
SalI	GTCGAC	2 cut(s)	154, 3743
SapI	GCTCTTC	1 cut(s)	3391
SchI	GAGTC	4 cut(s)	206, 1467, 1788, 4088
SexAI	ACCWGGT	2 cut(s)	2724, 4492
SfcI	CTRYAG	5 cut(s)	1289, 2218, 3760, 3832, 4527
SfoI	GGCGCC	1 cut(s)	1161
Sfr274I	CTCGAG	2 cut(s)	113, 4041
SfuI	TTCGAA	1 cut(s)	614
SgrAI	CRCCGGYG	1 cut(s)	4353
SinI	GGWCC	9 cut(s)	136, 956, 1394, 1583, 3160, 3272, 4299, 4626, 4738
SlaI	CTCGAG	2 cut(s)	113, 4041
SmiMI	CAYNNNNRTG	6 cut(s)	674, 786, 2751, 2928, 3183, 4171
SmlI	CTYRAG	8 cut(s)	113, 500, 637, 776, 1876, 1934, 4041, 4285
SmoI	CTYRAG	8 cut(s)	113, 500, 637, 776, 1876, 1934, 4041, 4285
SnaBI	TACGTA	1 cut(s)	3058
SphI	GCATGC	3 cut(s)	3026, 3217, 4402
SspDI	GGCGCC	1 cut(s)	1159
SspMI	CTAG	6 cut(s)	939, 1539, 1983, 2826, 2997, 3558
SstI	GAGCTC	2 cut(s)	975, 1310
StyI	CCWWGG	6 cut(s)	222, 1163, 1947, 2230, 3572, 4553
TaqII	GACCGA	1 cut(s)	4614
TatI	WGTACW	2 cut(s)	3300, 4147
TauI	GCSGC	8 cut(s)	2118, 2259, 3591, 3600, 3607, 3809, 4010, 4466
TspDTI	ATGAA	9 cut(s)	453, 669, 1047, 1119, 2178, 2228, 3238, 4161, 4193
TspGWI	ACGGA	4 cut(s)	865, 1014, 2519, 4728
Tth111I	GACNNNGTC	1 cut(s)	3740
Van91I	CCANNNNNTGG	3 cut(s)	1532, 1844, 3578
VneI	GTGCAC	1 cut(s)	4357
VpaK11BI	GGWCC	9 cut(s)	136, 956, 1394, 1583, 3160, 3272, 4299, 4626, 4738
VspI	ATTAAT	2 cut(s)	3872, 3983
XbaI	TCTAGA	2 cut(s)	938, 2825
XceI	RCATGY	3 cut(s)	3026, 3217, 4402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3579
XhoI	CTCGAG	2 cut(s)	113, 4041
XmiI	GTMKAC	3 cut(s)	155, 2153, 3744
XmnI	GAANNNNTTC	3 cut(s)	382, 1244, 1661
XspI	CTAG	6 cut(s)	939, 1539, 1983, 2826, 2997, 3558
ZraI	GACGTC	2 cut(s)	3739, 3969
Zsp2I	ATGCAT	1 cut(s)	1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.