Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002775.1

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Forward (+)

188757 .. 194062

Gene Structure 5306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggacggcctctggctctcccaacgctaccacaaccactccgagtttatgaagacagccaccatgccagctcaacaatttgtcccccaaaaataccgagccccctcagctcggcaagaagcagttcatcatcgaaccctttcaaaggtttggcctcgatcccgaagctcgcgtttgtcaccgaatttgaaagatctttgtcttggaggaacattggctcctgaactagggaagctggtttacataaaatccataattttgcggaataattcttttactgggaaaattcctaaagagattggagacttaatggagctggaggttttggacttgggatataataactttagtggatcatttccatctgatttcagcaacaatctgtccctcactacccttttacttgacaataaccaatttcttggttgtttatcccctgaagtccatgagcttaagatggtttccgaatgccaaacagatgagagccaactaacagatcctgctttcgggacatcatgcatgagcagatctatcagctgtttccagtgggaaacactagcaaccattctcgaggaatttcataaagttatggatgaattctcatcaagcaaagttgcaggagaacatgatgctgctaagactattgaaacggatgctattcctgctcttgagaaacttcagaagatatcagaggttgtgaacagcatgaaagatttgatccaattctgccgggaaaacaaagttggcccaattgagggcttgaaggtttatcctcgacatgcgaatgcaaccaagcttcagatgcaaaagatgcaggaaatggagcagttagcaagtgttcagggcatgccaactgataggaacactctgaataagctaatggtaataacaaccagcacatggccaatggaggagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

306

Amino Acids

34.55

Weight (kDa)

5.94

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	83 - 140	4.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	900
AccII	CGCG	1 cut(s)	172
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	4 cut(s)	153, 361, 491, 712
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	4 cut(s)	184, 285, 575, 596
AcuI	CTGAAG	3 cut(s)	459, 662, 782
AfiI	CCNNNNNNNGG	7 cut(s)	111, 145, 227, 506, 754, 755, 900
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	144, 190, 647, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	4 cut(s)	153, 361, 491, 712
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	4 cut(s)	7, 152, 745, 902
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	4 cut(s)	184, 285, 575, 596
Asp700I	GAANNNNTTC	2 cut(s)	123, 139
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	370, 451
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	227, 557
BfrI	CTTAAG	1 cut(s)	452
BglII	AGATCT	2 cut(s)	193, 527
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	619, 643, 792, 801
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	731
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 202, 232
Bsc4I	CCNNNNNNNGG	7 cut(s)	111, 145, 227, 506, 754, 755, 900
Bse1I	ACTGG	2 cut(s)	283, 544
BseGI	GGATG	2 cut(s)	598, 658
BseLI	CCNNNNNNNGG	7 cut(s)	111, 145, 227, 506, 754, 755, 900
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	283, 544
BseXI	GCAGC	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	4 cut(s)	9, 154, 747, 904
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	730
BslFI	GGGAC	3 cut(s)	68, 370, 523
BslI	CCNNNNNNNGG	7 cut(s)	111, 145, 227, 506, 754, 755, 900
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	3 cut(s)	68, 370, 523
BsmI	GAATGC	2 cut(s)	473, 790
BsnI	GGCC	4 cut(s)	9, 154, 747, 904
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	4 cut(s)	9, 154, 747, 904
BspCNI	CTCAG	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	4 cut(s)	153, 361, 491, 712
BspTI	CTTAAG	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	283, 544
BssMI	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
BstAFI	CTTAAG	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstC8I	GCNNGC	3 cut(s)	69, 170, 848
BstDEI	CTNAG	2 cut(s)	106, 636
BstENI	CCTNNNNNAGG	2 cut(s)	143, 225
BstF5I	GGATG	2 cut(s)	598, 658
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	6 cut(s)	161, 196, 356, 499, 530, 720
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 662, 802, 811
BstNSI	RCATGY	2 cut(s)	782, 850
BstSCI	CCNGG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	3 cut(s)	193, 496, 527
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	3 cut(s)	193, 496, 527
BsuRI	GGCC	4 cut(s)	9, 154, 747, 904
BtsCI	GGATG	2 cut(s)	598, 658
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	3 cut(s)	69, 170, 848
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	746
CviAII	CATG	9 cut(s)	64, 446, 516, 520, 626, 706, 779, 847, 900
DdeI	CTNAG	2 cut(s)	106, 636
DpnI	GATC	6 cut(s)	160, 195, 355, 498, 529, 719
DpnII	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
EaeI	YGGCCR	1 cut(s)	902
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	687
Eco57I	CTGAAG	3 cut(s)	459, 662, 782
Eco88I	CYCGRG	1 cut(s)	569
EcoNI	CCTNNNNNAGG	2 cut(s)	143, 225
EcoRI	GAATTC	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	687
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	9 cut(s)	67, 449, 519, 523, 629, 709, 782, 850, 903
FaqI	GGGAC	3 cut(s)	68, 370, 523
FatI	CATG	9 cut(s)	63, 445, 515, 519, 625, 705, 778, 846, 899
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	2 cut(s)	605, 665
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	2 cut(s)	227, 557
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	4 cut(s)	9, 154, 747, 904
HapII	CCGG	1 cut(s)	730
Hin1II	CATG	9 cut(s)	67, 449, 519, 523, 629, 709, 782, 850, 903
HindIII	AAGCTT	1 cut(s)	794
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	241, 700
Hpy188I	TCNGA	7 cut(s)	43, 367, 466, 681, 691, 801, 870
Hpy188III	TCNNGA	5 cut(s)	162, 221, 508, 569, 668
Hpy8I	GTNNAC	2 cut(s)	241, 700
HpyAV	CCTTC	1 cut(s)	757
HpyCH4V	TGCA	5 cut(s)	519, 617, 788, 805, 814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 662, 802, 811
HpyF3I	CTNAG	2 cut(s)	106, 636
Hsp92II	CATG	9 cut(s)	67, 449, 519, 523, 629, 709, 782, 850, 903
Kzo9I	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
LmnI	GCTCC	4 cut(s)	223, 313, 823, 913
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	4 cut(s)	619, 643, 792, 801
MaeI	CTAG	2 cut(s)	227, 557
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	6 cut(s)	160, 195, 355, 498, 529, 719
MboI	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
MboII	GAAGA	2 cut(s)	64, 694
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	3 cut(s)	193, 496, 527
MhlI	GDGCHC	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	904
MluNI	TGGCCA	1 cut(s)	904
Mox20I	TGGCCA	1 cut(s)	904
Mph1103I	ATGCAT	1 cut(s)	521
MroXI	GAANNNNTTC	2 cut(s)	123, 139
MscI	TGGCCA	1 cut(s)	904
MseI	TTAA	2 cut(s)	308, 453
MslI	CAYNNNNRTG	1 cut(s)	783
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	1 cut(s)	537
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	730
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	2 cut(s)	473, 790
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	107, 662, 802, 811
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
NlaIII	CATG	9 cut(s)	67, 449, 519, 523, 629, 709, 782, 850, 903
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	2 cut(s)	782, 850
PaeI	GCATGC	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	569
PctI	GAATGC	2 cut(s)	473, 790
PdmI	GAANNNNTTC	2 cut(s)	123, 139
PflMI	CCANNNNNTGG	1 cut(s)	900
PkrI	GCNGC	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	746
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	3 cut(s)	193, 496, 527
PvuII	CAGCTG	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	308, 453
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	6 cut(s)	158, 193, 353, 496, 527, 717
Sau96I	GGNCC	1 cut(s)	746
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	4 cut(s)	619, 643, 792, 801
Sfr274I	CTCGAG	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	3 cut(s)	452, 569, 668
SmoI	CTYRAG	3 cut(s)	452, 569, 668
SphI	GCATGC	1 cut(s)	850
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	227, 557
StyD4I	CCNGG	1 cut(s)	729
TaqI	TCGA	4 cut(s)	133, 157, 570, 775
Tru1I	TTAA	2 cut(s)	308, 453
Tru9I	TTAA	2 cut(s)	308, 453
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	5 cut(s)	65, 116, 569, 609, 722
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	900
Vha464I	CTTAAG	1 cut(s)	452
XagI	CCTNNNNNAGG	2 cut(s)	143, 225
XapI	RAATTY	4 cut(s)	184, 285, 575, 596
XceI	RCATGY	2 cut(s)	782, 850
XhoI	CTCGAG	1 cut(s)	569
XmnI	GAANNNNTTC	2 cut(s)	123, 139
XspI	CTAG	2 cut(s)	227, 557
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.