Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

33080331 .. 33099386

Gene Structure 19056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG321500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGACGGCCTCTGGCTCTCCCAACGCTACCACAACCACTCCGAGTTTATGACGACAGCCGCCATGCCAGCTCAACAATTTGTCCCCCAAAAATACCGAGCCCCCTCAGTCCGGGCAAGAAGCAGTTCATCTCGAACCCTTTCAAAGGTTTGGCCTCGATCCCGAAGCTCGCGTTTGTCACCTGACCACCAGTTGACCACCACCGCAGTGACCACCAGTGGTCACGAATCAGTCGTGACTTCTCTCCAATACTATTCCTCTCTGATTCAGTCGCGATGTAGTTCTAACAATCTCCAAATGTATGATGGAAATACAATTATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGAGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGATCCTTCATCCACAACAATCCCAGAAGAAGCCGCTGCTTCAAAGATTCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

171

Amino Acids

19.69

Weight (kDa)

9.96

Isoelectric Point (pI)

71.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	172, 274
AciI	CCGC	3 cut(s)	60, 204, 491
AclWI	GGATC	2 cut(s)	153, 454
AcsI	RAATTY	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	111, 145
AgsI	TTSAA	3 cut(s)	144, 391, 500
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	71, 168
AluI	AGCT	2 cut(s)	71, 168
AlwI	GGATC	2 cut(s)	153, 454
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	7, 152
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	2 cut(s)	124, 139
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	3 cut(s)	60, 491, 494
BlsI	GCNGC	3 cut(s)	61, 492, 495
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 145
Bse1I	ACTGG	3 cut(s)	190, 216, 412
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	2 cut(s)	111, 145
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	190, 216, 412
BseXI	GCAGC	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	172, 274
BshFI	GGCC	2 cut(s)	9, 154
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	111, 145
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	9, 154
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	158, 459
Bsp68I	TCGCGA	1 cut(s)	274
BspACI	CCGC	3 cut(s)	60, 204, 491
BspANI	GGCC	2 cut(s)	9, 154
BspCNI	CTCAG	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	172, 274
BspPI	GGATC	2 cut(s)	153, 454
BsrI	ACTGG	3 cut(s)	190, 216, 412
BssMI	GATC	2 cut(s)	158, 459
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	69, 170
BstDEI	CTNAG	1 cut(s)	106
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	2 cut(s)	172, 274
BstKTI	GATC	2 cut(s)	161, 462
BstMBI	GATC	2 cut(s)	158, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	2 cut(s)	172, 274
BstV1I	GCAGC	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	9, 154
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 223, 419
BtuMI	TCGCGA	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	69, 170
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	9, 16, 59, 71, 101, 154, 168, 490
CviKI_1	RGCY	8 cut(s)	9, 16, 59, 71, 101, 154, 168, 490
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	160, 461
DpnII	GATC	2 cut(s)	158, 459
Eco24I	GRGCYC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	1 cut(s)	67
FaiI	YATR	7 cut(s)	50, 65, 303, 320, 327, 334, 458
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	60, 491, 494
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	60, 491, 494
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	3 cut(s)	60, 491, 494
HaeIII	GGCC	2 cut(s)	9, 154
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	4 cut(s)	227, 265, 356, 504
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	43, 264, 450
Hpy188III	TCNNGA	6 cut(s)	132, 162, 224, 235, 273, 437
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	158, 459
LpnPI	CCDG	7 cut(s)	81, 125, 195, 203, 229, 425, 494
Lsp1109I	GCAGC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	5 cut(s)	177, 208, 221, 235, 343
MalI	GATC	2 cut(s)	160, 461
MboI	GATC	2 cut(s)	158, 459
MboII	GAAGA	2 cut(s)	373, 496
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	77, 315, 443
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	20, 115, 165, 268, 433
MroXI	GAANNNNTTC	2 cut(s)	124, 139
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	172, 274
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	158, 459
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	4 cut(s)	177, 208, 221, 235
NruI	TCGCGA	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	2 cut(s)	124, 139
PfeI	GAWTC	3 cut(s)	227, 265, 504
PkrI	GCNGC	3 cut(s)	61, 492, 495
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	3 cut(s)	60, 491, 494
Sau3AI	GATC	2 cut(s)	158, 459
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	6 cut(s)	73, 150, 170, 184, 325, 396
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	77, 315, 443
SsiI	CCGC	3 cut(s)	60, 204, 491
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	133, 157, 359, 438
TasI	AATT	3 cut(s)	77, 315, 443
TauI	GCSGC	2 cut(s)	62, 493
TfiI	GAWTC	3 cut(s)	227, 265, 504
TscAI	CASTG	3 cut(s)	213, 223, 419
TseFI	GTSAC	4 cut(s)	177, 208, 221, 235
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	4 cut(s)	177, 208, 221, 235
TspDTI	ATGAA	2 cut(s)	117, 455
TspRI	CASTG	3 cut(s)	213, 223, 419
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	124, 139
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.