Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Forward (+)

65881667 .. 65883141

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACTCGTTGTCAAAGGATCTGCAAGCAAATAGCAATTTGTGAGCTTCAGGGTTCTGACAGCTGGGCAAAGAGTTTGGAGTCGCAGTCGCTGAATGACTTGGGCTTTTCCAAAAGATATGTGAGGTGTTTCCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGATTTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCAAATGCAACCAAGCTCCAGATGCAAAAGATCCAGGAAATGGAGCAGTTAGCAAGTATTCAGGGCATGCCAACTGACAGGAACACTCTTAGTAATCCAATGGTGTTGCATCCCGGACTAAACAATCAAATGAATAACAACCAGCACATGGCCATTCGAGGAGCTTTGAGTGGCTCAGCACAAGCAGCTCTAGCGCTGACTAATTACCAGAATCTGCTCAAATGCAAATTCTCTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

157

Amino Acids

17.62

Weight (kDa)

9.13

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	22 - 72	3.2e-13	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	271, 379
AclWI	GGATC	2 cut(s)	26, 256
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	4 cut(s)	205, 206, 271, 379
AgsI	TTSAA	2 cut(s)	214, 468
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	5 cut(s)	46, 63, 247, 395, 419
AluI	AGCT	5 cut(s)	46, 63, 247, 395, 419
AlwI	GGATC	2 cut(s)	26, 256
AlwNI	CAGNNNCTG	2 cut(s)	91, 445
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	2 cut(s)	196, 381
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	182, 345
BalI	TGGCCA	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	2 cut(s)	182, 345
BfaI	CTAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	428
BisI	GCNGC	1 cut(s)	417
BlpI	GCTNAGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	182, 266, 345
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	3 cut(s)	182, 266, 345
BmsI	GCATC	2 cut(s)	243, 349
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	406
BpuMI	CCSGG	2 cut(s)	182, 345
Bsa29I	ATCGAT	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 206, 271, 379
BseBI	CCWGG	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	171
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	205, 206, 271, 379
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	198, 383
BshVI	ATCGAT	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	181, 345
BslI	CCNNNNNNNGG	4 cut(s)	205, 206, 271, 379
BsnI	GGCC	2 cut(s)	198, 383
Bsp143I	GATC	3 cut(s)	18, 168, 261
Bsp1720I	GCTNAGC	1 cut(s)	406
BspANI	GGCC	2 cut(s)	198, 383
BspCNI	CTCAG	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	171
BspPI	GGATC	2 cut(s)	26, 256
BssMI	GATC	3 cut(s)	18, 168, 261
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	26, 299
BstDEI	CTNAG	2 cut(s)	320, 406
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	21, 171, 264
BstMBI	GATC	3 cut(s)	18, 168, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 416, 422
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	2 cut(s)	233, 301
BstSCI	CCNGG	3 cut(s)	180, 264, 343
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	18, 261
BstYI	RGATCY	2 cut(s)	18, 261
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	198, 383
BsuTUI	ATCGAT	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	26, 299
CaiI	CAGNNNCTG	2 cut(s)	91, 445
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	171
CviAII	CATG	5 cut(s)	157, 230, 298, 379, 471
DdeI	CTNAG	2 cut(s)	320, 406
DpnI	GATC	3 cut(s)	20, 170, 263
DpnII	GATC	3 cut(s)	18, 168, 261
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	469
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	138
Eco47III	AGCGCT	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	138
FaeI	CATG	5 cut(s)	160, 233, 301, 382, 474
FaiI	YATR	6 cut(s)	120, 158, 231, 299, 380, 472
FatI	CATG	5 cut(s)	156, 229, 297, 378, 470
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	417
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	198, 383
HapII	CCGG	2 cut(s)	181, 345
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	5 cut(s)	160, 233, 301, 382, 474
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	3 cut(s)	4, 80, 442
HpaII	CCGG	2 cut(s)	181, 345
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	58, 142
Hpy188III	TCNNGA	2 cut(s)	133, 250
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	6 cut(s)	24, 233, 239, 256, 340, 456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 416, 422
HpyF3I	CTNAG	2 cut(s)	320, 406
Hsp92II	CATG	5 cut(s)	160, 233, 301, 382, 474
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	18, 168, 261
LmnI	GCTCC	3 cut(s)	252, 274, 392
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	243, 349
MaeI	CTAG	1 cut(s)	422
MalI	GATC	3 cut(s)	20, 170, 263
MboI	GATC	3 cut(s)	18, 168, 261
MboII	GAAGA	1 cut(s)	456
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	18, 261
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	4 cut(s)	36, 201, 433, 458
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	117, 136, 199, 234, 383
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	2 cut(s)	181, 345
MspR9I	CCNGG	3 cut(s)	182, 266, 345
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	253, 416, 422
NciI	CCSGG	2 cut(s)	182, 345
NdeII	GATC	3 cut(s)	18, 168, 261
NlaIII	CATG	5 cut(s)	160, 233, 301, 382, 474
NspI	RCATGY	2 cut(s)	233, 301
PaeI	GCATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	2 cut(s)	271, 379
PfoI	TCCNGGA	2 cut(s)	264, 343
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	2 cut(s)	91, 445
PsuI	RGATCY	2 cut(s)	18, 261
PvuII	CAGCTG	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	18, 168, 261
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	182, 266, 345
SetI	ASST	8 cut(s)	48, 65, 128, 147, 219, 249, 397, 421
SfaNI	GCATC	2 cut(s)	243, 349
SmiMI	CAYNNNNRTG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	36, 201, 433, 458
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	180, 264, 343
TaqI	TCGA	3 cut(s)	171, 226, 388
TasI	AATT	4 cut(s)	36, 201, 433, 458
TfiI	GAWTC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	173, 377
Van91I	CCANNNNNTGG	2 cut(s)	271, 379
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	2 cut(s)	233, 301
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.