Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

51572426 .. 51576254

Gene Structure 3829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTGTACCACTGGAACATGACTACATAGGCTTAGCAGAGACTTCTTCAATGGAAAGAAGCTCTGATAGGATTTCCTCTTCCTCCTCCTCTGCCCACTCAACTACAGAGGATGTCAAGACCTCTGCTTTCAACCTCAAGGAGACTGAGCTGAGGCTTGGCTTGCCTGGCTCTCACTCTCCTGAGAGAAAACCAGGAATTGCTCTTTCAATTTTTGGCAAAGATTTGGAGGACAATAAGCAAAATGGATATCCTCTAAACCCTTCAAAAACCCCTGTGTCTGGGGCTAAGAGGGGTTTCTCTGATGCCATTGATGGGTCTTCTGAGAAATGGGTTTTTCGTATGAGTAATGGATCTGAAGCTGATAAGGGAGCAGTCTTGTTCTCTCCTAAAGGTGAGAGTAATGCTAAAACACAACAGCTATGTGTGTCTGGACAAACCAAGAAAGAGGTTGCTGCTTCTGTAGTTCCTCAGTCACCAAAGCCAGTCCAAGAGAAGCAGAAGTCTCAGGTCTCTGAGCTTGTTAGTCCTCCTGCTGCCAAGGCACAGGTGGTAGGATGGCCCCCAATTCGATCATTTCGAAAGAACACCATGGCCTCAAATTTGGCAAAGAACAATGATGATGCTGAGGGAAAACAAGGGTCTGGGTGTCTTTATGTGAAGGTTAGCATGGATGGTGCTCCATATCTAAGGAAGGTTGACCTTAAAATGTACAACAACTACATGGAACTCTCTATGGCTTTGGAGAAGATGTTCAGCTGCTTCACTATTGGGCAGTGCAGTTCTAATGGATTTCCAGAGAAGGATGGCCTGAGTGAGAGTCGGTTGATGGATCTTCTCCACGGTTCTGAATACGTTCTTACTTTTGAAGACAAGGACAATGATTGGATGCTTGTTGGTGATGTTCCTTGGGGTGTTGTATATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

309

Amino Acids

33.65

Weight (kDa)

5.92

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	48 - 306	1.8e-74	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	361, 840
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	9, 713
AfiI	CCNNNNNNNGG	2 cut(s)	281, 315
AgsI	TTSAA	5 cut(s)	51, 133, 210, 267, 869
AjnI	CCWGG	2 cut(s)	166, 193
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
AluBI	AGCT	6 cut(s)	63, 151, 362, 421, 520, 759
AluI	AGCT	6 cut(s)	63, 151, 362, 421, 520, 759
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	35, 137, 510, 517
AlwI	GGATC	2 cut(s)	361, 840
AoxI	GGCC	3 cut(s)	560, 594, 808
ApeKI	GCWGC	3 cut(s)	455, 536, 759
ApoI	RAATTY	1 cut(s)	601
Asp700I	GAANNNNTTC	2 cut(s)	752, 855
AspS9I	GGNCC	1 cut(s)	561
AsuHPI	GGTGA	3 cut(s)	407, 468, 911
AsuII	TTCGAA	1 cut(s)	580
BbsI	GAAGAC	2 cut(s)	312, 876
Bbv12I	GWGCWC	1 cut(s)	682
BbvCI	CCTCAGC	2 cut(s)	152, 627
BbvI	GCAGC	3 cut(s)	442, 523, 746
BccI	CCATC	5 cut(s)	308, 552, 668, 800, 823
BciT130I	CCWGG	2 cut(s)	168, 195
BcoDI	GTCTC	4 cut(s)	35, 137, 510, 517
BfmI	CTRYAG	2 cut(s)	105, 462
BisI	GCNGC	3 cut(s)	456, 537, 760
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	3 cut(s)	457, 538, 761
Bme1390I	CCNGG	2 cut(s)	168, 195
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	2 cut(s)	168, 195
BmsI	GCATC	3 cut(s)	295, 613, 879
BpiI	GAAGAC	2 cut(s)	312, 876
Bpu10I	CCTNAGC	2 cut(s)	152, 627
Bpu1102I	GCTNAGC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	4 cut(s)	540, 591, 841, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 315
Bse1I	ACTGG	2 cut(s)	18, 485
BseBI	CCWGG	2 cut(s)	168, 195
BseDI	CCNNGG	4 cut(s)	540, 591, 841, 908
BseGI	GGATG	5 cut(s)	118, 563, 679, 811, 894
BseLI	CCNNNNNNNGG	2 cut(s)	281, 315
BseMII	CTCAG	9 cut(s)	138, 143, 174, 315, 485, 507, 521, 618, 803
BseNI	ACTGG	2 cut(s)	18, 485
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	3 cut(s)	442, 523, 746
BsgI	GTGCAG	1 cut(s)	799
BshFI	GGCC	3 cut(s)	562, 596, 810
BsiHKAI	GWGCWC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	281, 315
BsmAI	GTCTC	4 cut(s)	35, 137, 510, 517
BsnI	GGCC	3 cut(s)	562, 596, 810
Bso31I	GGTCTC	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	353, 572, 832
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	591
BspANI	GGCC	3 cut(s)	562, 596, 810
BspCNI	CTCAG	9 cut(s)	139, 144, 175, 316, 484, 508, 520, 619, 804
BspLI	GGNNCC	1 cut(s)	563
BspPI	GGATC	2 cut(s)	361, 840
BspT104I	TTCGAA	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	18, 485
BssECI	CCNNGG	4 cut(s)	540, 591, 841, 908
BssMI	GATC	3 cut(s)	353, 572, 832
BssT1I	CCWWGG	3 cut(s)	540, 591, 908
Bst2UI	CCWGG	2 cut(s)	168, 195
Bst4CI	ACNGT	1 cut(s)	845
Bst6I	CTCTTC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	591, 841
BstF5I	GGATG	5 cut(s)	118, 563, 679, 811, 894
BstKTI	GATC	3 cut(s)	356, 575, 835
BstMAI	GTCTC	4 cut(s)	35, 137, 510, 517
BstMBI	GATC	3 cut(s)	353, 572, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 168, 542
BstNI	CCWGG	2 cut(s)	168, 195
BstSCI	CCNGG	2 cut(s)	166, 193
BstSFI	CTRYAG	2 cut(s)	105, 462
BstV1I	GCAGC	3 cut(s)	442, 523, 746
BstV2I	GAAGAC	2 cut(s)	312, 876
BstX2I	RGATCY	2 cut(s)	353, 832
BstYI	RGATCY	2 cut(s)	353, 832
BsuRI	GGCC	3 cut(s)	562, 596, 810
BtgI	CCRYGG	2 cut(s)	591, 841
BtsCI	GGATG	5 cut(s)	118, 563, 679, 811, 894
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	2 cut(s)	11, 782
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	8, 712
CviAII	CATG	4 cut(s)	20, 592, 670, 724
CviQI	GTAC	2 cut(s)	8, 712
DpnI	GATC	3 cut(s)	355, 574, 834
DpnII	GATC	3 cut(s)	353, 572, 832
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	540, 591, 908
Eco31I	GGTCTC	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	166, 193
EcoRV	GATATC	1 cut(s)	251
EcoT14I	CCWWGG	3 cut(s)	540, 591, 908
ErhI	CCWWGG	3 cut(s)	540, 591, 908
FaeI	CATG	4 cut(s)	23, 595, 673, 727
FatI	CATG	4 cut(s)	19, 591, 669, 723
Fnu4HI	GCNGC	3 cut(s)	456, 537, 760
FokI	GGATG	5 cut(s)	125, 570, 686, 818, 901
Fsp4HI	GCNGC	3 cut(s)	456, 537, 760
GluI	GCNGC	3 cut(s)	456, 537, 760
HaeIII	GGCC	3 cut(s)	562, 596, 810
Hin1II	CATG	4 cut(s)	23, 595, 673, 727
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	1 cut(s)	820
HphI	GGTGA	3 cut(s)	407, 468, 911
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	6 cut(s)	67, 304, 325, 358, 517, 850
Hpy188III	TCNNGA	4 cut(s)	118, 182, 432, 797
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	4 cut(s)	273, 655, 688, 796
HpyCH4III	ACNGT	1 cut(s)	845
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	1 cut(s)	780
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 168, 542
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	23, 595, 673, 727
Kzo9I	GATC	3 cut(s)	353, 572, 832
LmnI	GCTCC	2 cut(s)	371, 685
Lsp1109I	GCAGC	3 cut(s)	442, 523, 746
LweI	GCATC	3 cut(s)	295, 613, 879
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	3 cut(s)	355, 574, 834
MboI	GATC	3 cut(s)	353, 572, 832
MboII	GAAGA	6 cut(s)	39, 72, 312, 760, 827, 881
MflI	RGATCY	2 cut(s)	353, 832
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	4 cut(s)	198, 210, 567, 601
MlyI	GAGTC	1 cut(s)	829
MroXI	GAANNNNTTC	2 cut(s)	752, 855
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	168, 195
MvaI	CCWGG	2 cut(s)	168, 195
MwoI	GCNNNNNNNGC	3 cut(s)	163, 168, 542
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	353, 572, 832
NlaIII	CATG	4 cut(s)	23, 595, 673, 727
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PdmI	GAANNNNTTC	2 cut(s)	752, 855
PkrI	GCNGC	3 cut(s)	457, 538, 761
PleI	GAGTC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	166, 193
PspGI	CCWGG	2 cut(s)	166, 193
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	353, 832
PvuII	CAGCTG	1 cut(s)	759
RsaI	GTAC	2 cut(s)	9, 713
RsaNI	GTAC	2 cut(s)	8, 712
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	3 cut(s)	456, 537, 760
Sau3AI	GATC	3 cut(s)	353, 572, 832
Sau96I	GGNCC	1 cut(s)	561
SchI	GAGTC	1 cut(s)	829
ScrFI	CCNGG	2 cut(s)	168, 195
SduI	GDGCHC	1 cut(s)	682
SfaNI	GCATC	3 cut(s)	295, 613, 879
SfcI	CTRYAG	2 cut(s)	105, 462
SfuI	TTCGAA	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	198, 210, 567, 601
StyD4I	CCNGG	2 cut(s)	166, 193
StyI	CCWWGG	3 cut(s)	540, 591, 908
TaaI	ACNGT	1 cut(s)	845
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	2 cut(s)	571, 580
TasI	AATT	4 cut(s)	198, 210, 567, 601
TatI	WGTACW	1 cut(s)	711
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	18, 782
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	3 cut(s)	455, 536, 759
Tsp45I	GTSAC	1 cut(s)	474
TspRI	CASTG	2 cut(s)	18, 782
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmnI	GAANNNNTTC	2 cut(s)	752, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.