Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004230.1

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

63042 .. 64576

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004230.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgaaggaatcaaggaagacaatgtacaaagatgggaaagcaaaagatgttcctgtggtgcacgatgtgcacattgaaggatcacagttgatgaagtttgggaatggcgaaatttcccaattcaacaaggagactgctgccggggtttacagtattgacttgcggcttgctcttcggataaaagccaggttcggcaagttgaagacacgcaattacaagccttatcgcaagatcgattgcaaacttaaggttccattgagtcttaatggaacatatgcaaatggcttcaacgctaacaagtgtagaaacgtttacttctttcacaatcctgatattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

113

Amino Acids

12.97

Weight (kDa)

9.81

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	77, 124, 202, 289
AjnI	CCWGG	1 cut(s)	185
Alw21I	GWGCWC	2 cut(s)	63, 72
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	2 cut(s)	59, 68
AlwI	GGATC	1 cut(s)	88
ApaLI	GTGCAC	2 cut(s)	59, 68
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	142
BaeGI	GKGCMC	2 cut(s)	63, 72
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbsI	GAAGAC	2 cut(s)	23, 209
Bbv12I	GWGCWC	2 cut(s)	63, 72
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	138, 164
BlsI	GCNGC	2 cut(s)	139, 165
Bme1390I	CCNGG	2 cut(s)	142, 187
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	142, 187
BpiI	GAAGAC	2 cut(s)	23, 209
BpuMI	CCSGG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	141
BseSI	GKGCMC	2 cut(s)	63, 72
BseXI	GCAGC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	63, 72
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	63, 72
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	80, 231
BspACI	CCGC	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	80, 231
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	87, 152
Bst6I	CTCTTC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	83, 234
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	80, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	140, 185
BstSLI	GKGCMC	2 cut(s)	63, 72
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	23, 209
Bsu15I	ATCGAT	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	4 cut(s)	166, 185, 220, 285
CviKI_1	RGCY	4 cut(s)	166, 185, 220, 285
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	82, 233
DpnII	GATC	2 cut(s)	80, 231
DraIII	CACNNNGTG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	185
FaiI	YATR	2 cut(s)	274, 276
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	138, 164
Fsp4HI	GCNGC	2 cut(s)	138, 164
GluI	GCNGC	2 cut(s)	138, 164
HapII	CCGG	1 cut(s)	141
HinfI	GANTC	2 cut(s)	8, 259
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	4 cut(s)	61, 70, 148, 313
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	4 cut(s)	61, 70, 148, 313
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	87, 152
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	61, 70, 240, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	80, 231
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	4 cut(s)	66, 154, 172, 199
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	309
MalI	GATC	2 cut(s)	82, 233
MboI	GATC	2 cut(s)	80, 231
MboII	GAAGA	3 cut(s)	28, 164, 214
MhlI	GDGCHC	2 cut(s)	63, 72
MluCI	AATT	3 cut(s)	111, 119, 211
MlyI	GAGTC	1 cut(s)	268
MseI	TTAA	3 cut(s)	246, 264, 340
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	142, 187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	80, 231
NlaIV	GGNNCC	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	139, 165
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	252
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	246, 264, 340
SatI	GCNGC	2 cut(s)	138, 164
Sau3AI	GATC	2 cut(s)	80, 231
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	142, 187
SduI	GDGCHC	2 cut(s)	63, 72
SetI	ASST	3 cut(s)	191, 252, 312
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	111, 119, 211
SsiI	CCGC	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	140, 185
TaaI	ACNGT	2 cut(s)	87, 152
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	111, 119, 211
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	246, 264, 340
Tru9I	TTAA	3 cut(s)	246, 264, 340
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	17, 107
Vha464I	CTTAAG	1 cut(s)	245
VneI	GTGCAC	2 cut(s)	59, 68
XapI	RAATTY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.