Rh3AG183000

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001039
Physical Location & Seq
Forward (+)
17320174 .. 17322945
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG183000.1

Sequence Viewer

Length: 540 bp
ATGTTAAAACTGGATAACGTTGGTTGCAAGTATTACGTCACTGAATTAGAGCTCATCATCGAACTTTACAGTGAAAACCCAAAGCCAATTAGATCTCCCAAGCTCGAAGTAACAGTCACCAATGCGTCTATGACCCAATTCAATCTCAACAGCAACAACAACACTCTCTACTACAACCTCGCCCTCGATGTCGCCATCAGAAACCCTAGCCCAACCTTCAGGGTACACTACAATCGCATCGAAGTCGCGGCGAAATATAGGGAGCAGAAATTTGCTTTGGTGACTTTGAGTTCGCCACCCTTTGACCAAGGAACCAAGAACATAACCATTCTGCATCCCCTTCTTCAAGGGCAACCCTCTAGCCTGGAGACCGATGCAGGCATTTACAGTATTGACCTGCAGTTTTCTTTTAGGATAAGCCGCCGGGTTCTCAAAGGAATCGTTTACAAACCAGTAGGGATGAGCTTAACAGTGACCATTGTCATAGAATATGCCACGAACTTCGCCACTAATGCCTATTGGAAGCGAAAACATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

179

Amino Acids

20.49

Weight (kDa)

9.38

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 64 - 117 2e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 405
AccII CGCG 1 cut(s) 248
AciI CCGC 2 cut(s) 248, 421
AclI AACGTT 1 cut(s) 18
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 1 cut(s) 225
AgsI TTSAA 2 cut(s) 142, 347
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 52, 103, 465
AluI AGCT 3 cut(s) 52, 103, 465
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 4 cut(s) 99, 131, 274, 306
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 109, 292
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 207, 360
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 405
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 249, 421
BlsI GCNGC 2 cut(s) 250, 422
Bme1390I CCNGG 2 cut(s) 365, 425
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 365, 425
BmsI GCATC 3 cut(s) 246, 343, 364
BoxI GACNNNNGTC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 15, 452
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 334, 465
BseNI ACTGG 2 cut(s) 15, 452
Bsh1236I CGCG 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 2 cut(s) 248, 421
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 15, 452
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 4 cut(s) 71, 115, 389, 472
BstC8I GCNNGC 1 cut(s) 379
BstF5I GGATG 2 cut(s) 334, 465
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 363, 423
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 2 cut(s) 334, 465
BtsIMutI CAGTG 3 cut(s) 39, 76, 477
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 379
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 224
CviJI RGCY 7 cut(s) 52, 85, 103, 210, 363, 420, 465
CviKI_1 RGCY 7 cut(s) 52, 85, 103, 210, 363, 420, 465
CviQI GTAC 1 cut(s) 224
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 362
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 307
FaiI YATR 5 cut(s) 131, 258, 323, 485, 492
Fnu4HI GCNGC 2 cut(s) 249, 421
FokI GGATG 2 cut(s) 321, 472
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 249, 421
FspBI CTAG 2 cut(s) 207, 360
GluI GCNGC 2 cut(s) 249, 421
GsuI CTGGAG 1 cut(s) 386
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 114
HinfI GANTC 1 cut(s) 438
HpaII CCGG 1 cut(s) 424
HphI GGTGA 2 cut(s) 109, 292
Hpy166II GTNNAC 2 cut(s) 226, 445
Hpy188I TCNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 226, 445
HpyAV CCTTC 2 cut(s) 226, 350
HpyCH4III ACNGT 4 cut(s) 71, 115, 389, 472
HpyCH4IV ACGT 2 cut(s) 18, 36
HpyCH4V TGCA 4 cut(s) 27, 334, 377, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpySE526I ACGT 2 cut(s) 18, 36
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 205, 350, 363, 377, 410, 437, 465
LweI GCATC 3 cut(s) 246, 343, 364
MaeI CTAG 2 cut(s) 207, 360
MaeII ACGT 2 cut(s) 18, 36
MaeIII GTNAC 5 cut(s) 37, 109, 115, 280, 472
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 4 cut(s) 44, 87, 137, 269
MnlI CCTC 3 cut(s) 188, 194, 367
MseI TTAA 3 cut(s) 5, 467, 538
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 2 cut(s) 365, 425
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 512
NciI CCSGG 1 cut(s) 425
NdeII GATC 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 4 cut(s) 37, 115, 280, 472
PfeI GAWTC 1 cut(s) 438
PkrI GCNGC 2 cut(s) 250, 422
PshAI GACNNNNGTC 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 5, 467, 538
SatI GCNGC 2 cut(s) 249, 421
Sau3AI GATC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 365, 425
SduI GDGCHC 1 cut(s) 54
SetI ASST 8 cut(s) 21, 39, 54, 105, 180, 218, 399, 467
SfaNI GCATC 3 cut(s) 246, 343, 364
SfcI CTRYAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 44, 87, 137, 269
SsiI CCGC 2 cut(s) 248, 421
SspMI CTAG 2 cut(s) 207, 360
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 363, 423
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 4 cut(s) 71, 115, 389, 472
TaiI ACGT 2 cut(s) 21, 39
TaqI TCGA 4 cut(s) 60, 105, 186, 240
TaqII GACCGA 1 cut(s) 386
TasI AATT 4 cut(s) 44, 87, 137, 269
TauI GCSGC 2 cut(s) 251, 423
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 3 cut(s) 5, 467, 538
Tru9I TTAA 3 cut(s) 5, 467, 538
TscAI CASTG 3 cut(s) 46, 76, 477
TseFI GTSAC 4 cut(s) 37, 115, 280, 472
Tsp45I GTSAC 4 cut(s) 37, 115, 280, 472
TspRI CASTG 3 cut(s) 46, 76, 477
XapI RAATTY 1 cut(s) 269
XspI CTAG 2 cut(s) 207, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.