Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

3040716 .. 3041448

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCTGAAACTAAAAAGAAAATTATGGACAAGTATAGTTCCATGTCTGATGAAAAAAAGAAAATTCTCAAGCGTCTAGGCATAGGGTGCGGCATCATCTTAATCATGGGCGTCGTCATTGGCTTAATAGTTGGTCTTCGCATTGTCCCTCCCATGGTTAAAGCCACAGTCACCAATGCTTCTCTAACCCAGTTCAATCTCAGCAGCAACAACATTCTCTACTACAACCTTGCACTCGACGTTGCCCTCCGAAGCAGTACCGGAACCAAGGTAAACTACAAGCGCATCAAAGTCACTGCAAAATATAAGAAGATGTTCACGTTAGGGACTTTTACTTCGCCACCTTTTAAGCAAGGCGCCAAGAACAAGACCATTGTTCTTCATCCAAATTTTCAAGGGCAGCAGTTTGTGATGCTTTCGGAAAACGACCTCTCTGTGTTTCGTTCAGAGACTGCGGCCGGCGCTTACGCTATCGATGCGGTGGTTGATCTGAAGATCAAACCATTCGCTTGCAGAACACAAGGGAAGTGCTTGTTGAAGGTCCCCTTGAGTTTGAATCATACATCTGCTAGTAGTAGTTTCAAGGCTACACAGTGTCCAATGCGTCTTGTCTGCTCAAAGACAAAAGGCTTCTCAAAGACAAAGACAAAAGGCTTCCCAAAGCAGCGTATACATTGGAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

229

Amino Acids

25.22

Weight (kDa)

10.19

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	3 cut(s)	90, 455, 479
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	63, 388
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	2 cut(s)	111, 357
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	196, 395, 538, 556, 583
Alw26I	GTCTC	1 cut(s)	443
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	204, 400, 664
ApoI	RAATTY	2 cut(s)	63, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	285, 359, 464
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	216, 412, 676
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	77, 570
BfoI	RGCGCY	2 cut(s)	360, 465
BisI	GCNGC	5 cut(s)	91, 205, 401, 456, 665
BlsI	GCNGC	5 cut(s)	92, 206, 402, 457, 666
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	265, 358, 543
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	4 cut(s)	102, 294, 402, 466
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	53, 568
Bsa29I	ATCGAT	1 cut(s)	474
BsaHI	GRCGYC	2 cut(s)	111, 357
BsaJI	CCNNGG	2 cut(s)	153, 267
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	153, 267
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	190
BseX3I	CGGCCG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	216, 412, 676
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	261, 459
BslFI	GGGAC	3 cut(s)	131, 340, 527
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	3 cut(s)	131, 340, 527
BsnI	GGCC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	487, 495
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	90, 455, 479
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	265, 358, 543
BspT107I	GGYRCC	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	153, 267
BssMI	GATC	2 cut(s)	487, 495
BssNAI	GTATAC	1 cut(s)	671
BssNI	GRCGYC	2 cut(s)	111, 357
BssT1I	CCWWGG	2 cut(s)	153, 267
Bst1107I	GTATAC	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	169, 594
BstACI	GRCGYC	2 cut(s)	111, 357
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	460, 511
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	382
BstH2I	RGCGCY	2 cut(s)	360, 465
BstHHI	GCGC	3 cut(s)	285, 359, 464
BstKTI	GATC	2 cut(s)	490, 498
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	487, 495
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 461, 476
BstV1I	GCAGC	3 cut(s)	216, 412, 676
BstV2I	GAAGAC	1 cut(s)	128
BstZ17I	GTATAC	1 cut(s)	671
BstZI	CGGCCG	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 599
Cac8I	GCNNGC	2 cut(s)	460, 511
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	3 cut(s)	285, 359, 464
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	3 cut(s)	62, 100, 593
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	3 cut(s)	43, 106, 154
CviJI	RGCY	6 cut(s)	123, 164, 458, 587, 630, 654
CviKI_1	RGCY	6 cut(s)	123, 164, 458, 587, 630, 654
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	200
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	2 cut(s)	489, 497
DpnII	GATC	2 cut(s)	487, 495
EaeI	YGGCCR	1 cut(s)	456
EagI	CGGCCG	1 cut(s)	456
EclXI	CGGCCG	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	153, 267
Eco47I	GGWCC	1 cut(s)	541
Eco52I	CGGCCG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	153, 267
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	153, 267
FaeI	CATG	3 cut(s)	46, 109, 157
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	3 cut(s)	131, 340, 527
FatI	CATG	3 cut(s)	42, 105, 153
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	5 cut(s)	91, 205, 401, 456, 665
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	5 cut(s)	91, 205, 401, 456, 665
FspBI	CTAG	2 cut(s)	77, 570
GlaI	GCGC	3 cut(s)	284, 358, 463
GluI	GCNGC	5 cut(s)	91, 205, 401, 456, 665
HaeII	RGCGCY	2 cut(s)	360, 465
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	2 cut(s)	261, 459
HgaI	GACGC	3 cut(s)	62, 100, 593
HhaI	GCGC	3 cut(s)	285, 359, 464
Hin1I	GRCGYC	2 cut(s)	111, 357
Hin1II	CATG	3 cut(s)	46, 109, 157
Hin6I	GCGC	3 cut(s)	283, 357, 462
HinP1I	GCGC	3 cut(s)	283, 357, 462
HinfI	GANTC	1 cut(s)	556
HpaII	CCGG	2 cut(s)	261, 459
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	274, 318, 671
Hpy188I	TCNGA	6 cut(s)	7, 49, 251, 421, 448, 492
Hpy8I	GTNNAC	3 cut(s)	274, 318, 671
Hpy99I	CGWCG	2 cut(s)	116, 242
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	2 cut(s)	169, 594
HpyCH4IV	ACGT	2 cut(s)	240, 320
HpyCH4V	TGCA	3 cut(s)	233, 299, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 461, 476
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	2 cut(s)	240, 320
Hsp92I	GRCGYC	2 cut(s)	111, 357
Hsp92II	CATG	3 cut(s)	46, 109, 157
HspAI	GCGC	3 cut(s)	283, 357, 462
KasI	GGCGCC	1 cut(s)	356
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	487, 495
LpnPI	CCDG	3 cut(s)	203, 274, 472
Lsp1109I	GCAGC	3 cut(s)	216, 412, 676
LweI	GCATC	4 cut(s)	102, 294, 402, 466
MaeI	CTAG	2 cut(s)	77, 570
MaeII	ACGT	2 cut(s)	240, 320
MaeIII	GTNAC	2 cut(s)	169, 292
MalI	GATC	2 cut(s)	489, 497
MboI	GATC	2 cut(s)	487, 495
MboII	GAAGA	4 cut(s)	128, 322, 371, 505
MluCI	AATT	3 cut(s)	21, 63, 388
Mly113I	GGCGCC	1 cut(s)	357
MnlI	CCTC	3 cut(s)	159, 257, 440
MroNI	GCCGGC	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	4 cut(s)	101, 125, 159, 348
MspI	CCGG	2 cut(s)	261, 459
MwoI	GCNNNNNNNGC	3 cut(s)	87, 461, 476
NaeI	GCCGGC	1 cut(s)	460
NarI	GGCGCC	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	487, 495
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	3 cut(s)	46, 109, 157
NlaIV	GGNNCC	3 cut(s)	265, 358, 543
NmuCI	GTSAC	2 cut(s)	169, 292
PdiI	GCCGGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	92, 206, 402, 457, 666
PluTI	GGCGCC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	265, 358, 543
PspPI	GGNCC	1 cut(s)	541
PspPPI	RGGWCCY	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	101, 125, 159, 348
SatI	GCNGC	5 cut(s)	91, 205, 401, 456, 665
Sau3AI	GATC	2 cut(s)	487, 495
Sau96I	GGNCC	1 cut(s)	541
SetI	ASST	7 cut(s)	231, 243, 273, 323, 346, 432, 543
SfaNI	GCATC	4 cut(s)	102, 294, 402, 466
SfoI	GGCGCC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	541
SmlI	CTYRAG	2 cut(s)	68, 547
SmoI	CTYRAG	2 cut(s)	68, 547
Sse9I	AATT	3 cut(s)	21, 63, 388
SsiI	CCGC	3 cut(s)	90, 455, 479
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	77, 570
StyI	CCWWGG	2 cut(s)	153, 267
TaaI	ACNGT	2 cut(s)	169, 594
TaiI	ACGT	2 cut(s)	243, 323
TaqI	TCGA	2 cut(s)	237, 474
TasI	AATT	3 cut(s)	21, 63, 388
TauI	GCSGC	2 cut(s)	93, 458
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	4 cut(s)	101, 125, 159, 348
Tru9I	TTAA	4 cut(s)	101, 125, 159, 348
TscAI	CASTG	2 cut(s)	301, 599
TseFI	GTSAC	2 cut(s)	169, 292
TseI	GCWGC	3 cut(s)	204, 400, 664
Tsp45I	GTSAC	2 cut(s)	169, 292
TspDTI	ATGAA	2 cut(s)	66, 371
TspRI	CASTG	2 cut(s)	301, 599
VpaK11BI	GGWCC	1 cut(s)	541
XapI	RAATTY	2 cut(s)	63, 388
XmiI	GTMKAC	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	2 cut(s)	77, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.