Prupe.7G111400_v2.0.a1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001039
Physical Location & Seq
Reverse (-)
13829792 .. 13830210
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G111400.1

Sequence Viewer

Length: 411 bp
ATGTTGTACATCTATGAACCCCAACGACCCAAAATCACTGTGACCAATGCCTCTCTCACACATTTCAATTTCACCAACACCAGCAACGCACTCTGCTACAACCTCACGCTCAATGTCGCCATCCGAAATCCTAACAAATGGGTTGGCATACACTACTGTGCCATCCAAGTCATTGCCAACTATAGAAAGAAGACATTTGCTTTGGTAAATTTGGCTTCGCCACCATTTTACCAAGGCCACAAGAACACCACCATTTTGCAGCATGTATTTGTTGAAGGGCAGCAGTTGGTGGAATTTGGGTTTAACTCAGAGACTGCTGCAGGGGTTTACAGTATTGATGTGAAGCTTGCTCTTAGAGTGCCACATACACGTCGGGCGATTATGAGTCTGACAAGATCAATTGCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

137

Amino Acids

15.37

Weight (kDa)

9.83

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 208, 293
AfaI GTAC 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 67, 275
AjiI CACGTC 1 cut(s) 371
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 2 cut(s) 346, 408
AluI AGCT 2 cut(s) 346, 408
Alw26I GTCTC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 259, 280, 317
ApoI RAATTY 2 cut(s) 208, 293
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AsuHPI GGTGA 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 271, 292, 304
BccI CCATC 2 cut(s) 128, 170
BcoDI GTCTC 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 181, 318
BisI GCNGC 3 cut(s) 260, 281, 318
BlsI GCNGC 3 cut(s) 261, 282, 319
BmgBI CACGTC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 120, 162
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 3 cut(s) 271, 292, 304
BshFI GGCC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 1 cut(s) 237
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 1 cut(s) 395
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 320
BspMAI CTGCAG 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 40, 158, 332
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 348, 406
BstDEI CTNAG 2 cut(s) 307, 353
BstF5I GGATG 2 cut(s) 120, 162
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 181, 318
BstV1I GCAGC 3 cut(s) 271, 292, 304
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 237
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 2 cut(s) 120, 162
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 348, 406
CaiI CAGNNNCTG 1 cut(s) 314
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 215, 237, 346, 408
CviKI_1 RGCY 4 cut(s) 215, 237, 346, 408
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 307, 353
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 266
FaiI YATR 6 cut(s) 15, 149, 183, 264, 366, 383
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 260, 281, 318
FokI GGATG 2 cut(s) 107, 149
Fsp4HI GCNGC 3 cut(s) 260, 281, 318
GluI GCNGC 3 cut(s) 260, 281, 318
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 1 cut(s) 385
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 125, 310, 390
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 40, 158, 332
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 259, 320, 404
HpyF3I CTNAG 2 cut(s) 307, 353
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 395
LpnPI CCDG 2 cut(s) 94, 306
Lsp1109I GCAGC 3 cut(s) 271, 292, 304
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 1 cut(s) 202
MfeI CAATTG 1 cut(s) 399
MluCI AATT 4 cut(s) 67, 208, 293, 399
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 2 cut(s) 61, 113
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 156
MunI CAATTG 1 cut(s) 399
NdeII GATC 1 cut(s) 395
NlaIII CATG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 156
PkrI GCNGC 3 cut(s) 261, 282, 319
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PstI CTGCAG 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 260, 281, 318
Sau3AI GATC 1 cut(s) 395
SchI GAGTC 1 cut(s) 394
SetI ASST 4 cut(s) 105, 348, 373, 410
SfcI CTRYAG 2 cut(s) 181, 318
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 4 cut(s) 67, 208, 293, 399
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 40, 158, 332
TaiI ACGT 1 cut(s) 373
TasI AATT 4 cut(s) 67, 208, 293, 399
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 259, 280, 317
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 43
XapI RAATTY 2 cut(s) 208, 293
XceI RCATGY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.