Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

12272772 .. 12274529

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAACCAACACCGTCGACCCGCCATTAGCAATCCCAACCATGATCTGCCACGTCGTATCATCATCCGAGTCTAGGCCACAGACAATCTGCTGCTCTATCGGACGACATCTACGATCGCAACCACCATTGCGGAGGAGCAGTAGGATGACAGATGTGCCTGAGGTTGGCTTCCGATGGGAGCCGCTGAATTCGACACCTTTAAGAGGAGGCGGCGAGAGTGCCAAAGCGAGAAGACACGCTAGAGAGAATAGGATCTCCAAGGCTCGAAGTAACAGTCACCGATGCGTCTATGACCAATTCAACCTCAACAGCAACAACAACAACACTCTCTACTACAACCTCGCCCTCGATGTTGCCATCAGAAACCCTAGTTCAACCTTCAGTATACACTACAAACGCATCGAAGTCACAGCGAAATTTAGGCAGCAGAGAGTTGCTATGGTGACTTTGAGTTTGCCACTCTTTGACCAAGGAACCAAAAACATAACCATTGTGTATCCAGTTCTTCAAGGGCAGCCCTCTAGCTTCGAGACCGATGCAGACATTTACAATATTGATGTGCAGTTTGCTTTTCGAATAAGTCGCTGGGTTCTCAAAGGAATCGTTTACAAACCACAAAGGATGTGTATGTTGAAGGTTCCATCGGGTTTTAATAATACTTCTCCTAGTCGTGGTTTCAAGGCTACACAATGTTTAGTGAAGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

238

Amino Acids

26.9

Weight (kDa)

10.25

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	18, 388
AciI	CCGC	4 cut(s)	23, 133, 185, 213
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	190, 419
AcuI	CTGAAG	1 cut(s)	367
AfiI	CCNNNNNNNGG	4 cut(s)	75, 167, 206, 674
AgsI	TTSAA	5 cut(s)	304, 378, 512, 637, 682
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	1 cut(s)	528
AluI	AGCT	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	93, 427, 517
ApoI	RAATTY	2 cut(s)	190, 419
ArsI	GACNNNNNNTTYG	4 cut(s)	262, 294, 439, 471
AsuHPI	GGTGA	2 cut(s)	272, 457
AsuII	TTCGAA	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	80, 439, 529
BccI	CCATC	3 cut(s)	171, 368, 652
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciVI	GTATCC	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	5 cut(s)	75, 243, 372, 525, 669
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	5 cut(s)	94, 185, 214, 428, 518
BlsI	GCNGC	5 cut(s)	95, 186, 215, 429, 519
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	183, 478, 642
BmsI	GCATC	3 cut(s)	275, 411, 529
BpiI	GAAGAC	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	577
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	261, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 167, 206, 674
Bse1I	ACTGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	261, 472
BseGI	GGATG	3 cut(s)	65, 153, 630
BseLI	CCNNNNNNNGG	4 cut(s)	75, 167, 206, 674
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	2 cut(s)	151, 222
BseXI	GCAGC	3 cut(s)	80, 439, 529
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	119
BslI	CCNNNNNNNGG	4 cut(s)	75, 167, 206, 674
BsmAI	GTCTC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	45, 116, 255
BspACI	CCGC	4 cut(s)	23, 133, 185, 213
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	183, 478, 642
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	261, 472
BssMI	GATC	3 cut(s)	45, 116, 255
BssNAI	GTATAC	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	261, 472
Bst1107I	GTATAC	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	16, 278
Bst6I	CTCTTC	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	65, 153, 630
BstKTI	GATC	3 cut(s)	48, 119, 258
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	3 cut(s)	45, 116, 255
BstMCI	CGRYCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	80, 439, 529
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BstZ17I	GTATAC	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	65, 153, 630
CseI	GACGC	1 cut(s)	277
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	7 cut(s)	79, 171, 184, 266, 520, 528, 686
CviKI_1	RGCY	7 cut(s)	79, 171, 184, 266, 520, 528, 686
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	47, 118, 257
DpnII	GATC	3 cut(s)	45, 116, 255
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	261, 472
Eco31I	GGTCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	367
Eco81I	CCTNAGG	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	261, 472
ErhI	CCWWGG	2 cut(s)	261, 472
FaeI	CATG	1 cut(s)	46
FaiI	YATR	6 cut(s)	44, 294, 389, 443, 488, 632
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	2 cut(s)	18, 388
Fnu4HI	GCNGC	5 cut(s)	94, 185, 214, 428, 518
FokI	GGATG	3 cut(s)	52, 160, 637
Fsp4HI	GCNGC	5 cut(s)	94, 185, 214, 428, 518
FspBI	CTAG	5 cut(s)	75, 243, 372, 525, 669
GluI	GCNGC	5 cut(s)	94, 185, 214, 428, 518
GsaI	CCCAGC	1 cut(s)	592
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	71, 603
HphI	GGTGA	2 cut(s)	272, 457
Hpy166II	GTNNAC	3 cut(s)	19, 389, 610
Hpy188I	TCNGA	4 cut(s)	70, 104, 176, 365
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	3 cut(s)	19, 389, 610
Hpy99I	CGWCG	2 cut(s)	20, 59
HpyAV	CCTTC	2 cut(s)	391, 631
HpyCH4III	ACNGT	2 cut(s)	16, 278
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	542, 565
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	45, 116, 255
LmnI	GCTCC	2 cut(s)	138, 181
LpnPI	CCDG	3 cut(s)	174, 516, 574
Lsp1109I	GCAGC	3 cut(s)	80, 439, 529
LweI	GCATC	3 cut(s)	275, 411, 529
MaeI	CTAG	5 cut(s)	75, 243, 372, 525, 669
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	4 cut(s)	272, 278, 409, 445
MalI	GATC	3 cut(s)	47, 118, 257
MboI	GATC	3 cut(s)	45, 116, 255
MboII	GAAGA	2 cut(s)	246, 500
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	3 cut(s)	190, 299, 419
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	9 cut(s)	129, 157, 200, 203, 317, 353, 359, 532, 699
MseI	TTAA	2 cut(s)	203, 654
MspA1I	CMGCKG	1 cut(s)	187
NdeII	GATC	3 cut(s)	45, 116, 255
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	3 cut(s)	183, 478, 642
NmuCI	GTSAC	3 cut(s)	278, 409, 445
NspV	TTCGAA	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	603
PkrI	GCNGC	5 cut(s)	95, 186, 215, 429, 519
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	588
PspN4I	GGNNCC	3 cut(s)	183, 478, 642
PsuI	RGATCY	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	203, 654
SatI	GCNGC	5 cut(s)	94, 185, 214, 428, 518
Sau3AI	GATC	3 cut(s)	45, 116, 255
SchI	GAGTC	1 cut(s)	80
SetI	ASST	8 cut(s)	57, 168, 202, 309, 345, 383, 530, 642
SfaNI	GCATC	3 cut(s)	275, 411, 529
SfuI	TTCGAA	1 cut(s)	577
Sse9I	AATT	3 cut(s)	190, 299, 419
SsiI	CCGC	4 cut(s)	23, 133, 185, 213
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	5 cut(s)	75, 243, 372, 525, 669
StyI	CCWWGG	2 cut(s)	261, 472
TaaI	ACNGT	2 cut(s)	16, 278
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	7 cut(s)	18, 194, 268, 351, 405, 531, 577
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	190, 299, 419
TauI	GCSGC	2 cut(s)	187, 216
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	2 cut(s)	203, 654
Tru9I	TTAA	2 cut(s)	203, 654
TseFI	GTSAC	3 cut(s)	278, 409, 445
TseI	GCWGC	3 cut(s)	93, 427, 517
Tsp45I	GTSAC	3 cut(s)	278, 409, 445
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	2 cut(s)	190, 419
XmiI	GTMKAC	2 cut(s)	18, 388
XspI	CTAG	5 cut(s)	75, 243, 372, 525, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.