Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016115.1

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

16665 .. 17276

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016115.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgactgaaaggcgtgcctgcatcgactgcagcttctgcctattatgcaacaccatcctctgcttcaccctagtcttcttcatagtgtggttcatcttccttcccaaagagcccaaattcagcatcactaatgcctctctaacccatttcgacttcatcgagaccaacaaaactctccactacaaccttgagctcaacattaccatcacaaaccccaataagaaggtcaacatatactacaatggcatccaagtcattgctaactataaaacaaaggagtttgccatgctgactttagattccacaccattttaccaaggccacaagaacacaaccattttggatcatgtggtacttgaagggcagaaatcggtggagttcaaggagccagaggtttccgaatttaaggcagagactgctgctggtttttacagtattgatgtgcagcttgctcttcgagtaaagctcgggtatgacatgttcaagacaaggtattaccagcagtcaggcgacaagatcgattgcaagctgaaggttcctttgagacatgcaagacgtttcaaaactacaaagtgtggaaatgtatacattatttcagatcctgctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

203

Amino Acids

23.56

Weight (kDa)

8.75

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	351, 593
AcsI	RAATTY	2 cut(s)	116, 401
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	354
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	359, 382, 484, 562
AluBI	AGCT	5 cut(s)	33, 193, 448, 466, 529
AluI	AGCT	5 cut(s)	33, 193, 448, 466, 529
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	155, 407, 538
AlwI	GGATC	2 cut(s)	351, 593
AlwNI	CAGNNNCTG	3 cut(s)	36, 416, 602
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	30, 419, 445
ApoI	RAATTY	2 cut(s)	116, 401
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	114, 195
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	42, 406, 457
BccI	CCATC	2 cut(s)	62, 212
BcoDI	GTCTC	3 cut(s)	155, 407, 538
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	3 cut(s)	31, 420, 446
BlsI	GCNGC	3 cut(s)	32, 421, 447
BmeT110I	CYCGRG	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	387, 537
BmsI	GCATC	3 cut(s)	30, 132, 255
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	54, 246
BseMI	GCAATG	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	42, 406, 457
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	155, 407, 538
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	114, 195
Bsp143I	GATC	3 cut(s)	343, 516, 598
BspANI	GGCC	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	387, 537
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	2 cut(s)	351, 593
BspQI	GCTCTTC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	343, 516, 598
BssNAI	GTATAC	1 cut(s)	586
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	586
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	3 cut(s)	27, 36, 416
BstC8I	GCNNGC	4 cut(s)	15, 19, 450, 527
BstF5I	GGATG	2 cut(s)	54, 246
BstKTI	GATC	3 cut(s)	346, 519, 601
BstMAI	GTCTC	3 cut(s)	155, 407, 538
BstMBI	GATC	3 cut(s)	343, 516, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
BstNSI	RCATGY	2 cut(s)	481, 551
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	42, 406, 457
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	54, 246
Cac8I	GCNNGC	4 cut(s)	15, 19, 450, 527
CaiI	CAGNNNCTG	3 cut(s)	36, 416, 602
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	4 cut(s)	286, 347, 478, 548
CviJI	RGCY	8 cut(s)	33, 112, 193, 321, 388, 448, 466, 529
CviKI_1	RGCY	8 cut(s)	33, 112, 193, 321, 388, 448, 466, 529
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	3 cut(s)	345, 518, 600
DpnII	GATC	3 cut(s)	343, 516, 598
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	114, 195
Eco31I	GGTCTC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	114, 195
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	289, 350, 481, 551
FatI	CATG	4 cut(s)	285, 346, 477, 547
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	31, 420, 446
FokI	GGATG	2 cut(s)	41, 233
FriOI	GRGCYC	2 cut(s)	114, 195
Fsp4HI	GCNGC	3 cut(s)	31, 420, 446
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	31, 420, 446
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	289, 350, 481, 551
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	229, 586
Hpy188I	TCNGA	2 cut(s)	400, 598
Hpy188III	TCNNGA	2 cut(s)	160, 484
Hpy8I	GTNNAC	2 cut(s)	229, 586
HpyAV	CCTTC	4 cut(s)	110, 217, 353, 526
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	6 cut(s)	21, 30, 48, 445, 525, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	4 cut(s)	289, 350, 481, 551
Kzo9I	GATC	3 cut(s)	343, 516, 598
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	5 cut(s)	31, 402, 408, 492, 512
Lsp1109I	GCAGC	3 cut(s)	42, 406, 457
LweI	GCATC	3 cut(s)	30, 132, 255
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	556
MalI	GATC	3 cut(s)	345, 518, 600
MboI	GATC	3 cut(s)	343, 516, 598
MboII	GAAGA	4 cut(s)	67, 70, 88, 446
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	114, 195
MluCI	AATT	2 cut(s)	116, 401
MnlI	CCTC	3 cut(s)	68, 145, 385
MseI	TTAA	1 cut(s)	405
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
NdeII	GATC	3 cut(s)	343, 516, 598
NlaIII	CATG	4 cut(s)	289, 350, 481, 551
NlaIV	GGNNCC	2 cut(s)	387, 537
NspI	RCATGY	2 cut(s)	481, 551
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	32, 421, 447
PscI	ACATGT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	387, 537
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	3 cut(s)	36, 416, 602
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	31, 420, 446
Sau3AI	GATC	3 cut(s)	343, 516, 598
SduI	GDGCHC	2 cut(s)	114, 195
SfaNI	GCATC	3 cut(s)	30, 132, 255
SfcI	CTRYAG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	116, 401
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	5 cut(s)	24, 150, 159, 457, 519
TasI	AATT	2 cut(s)	116, 401
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseI	GCWGC	3 cut(s)	30, 419, 445
TspDTI	ATGAA	3 cut(s)	70, 82, 145
XapI	RAATTY	2 cut(s)	116, 401
XceI	RCATGY	2 cut(s)	481, 551
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.