Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

13825559 .. 13826167

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTGGAGGGTGTGCCTGCTGCTTCTGCCTGCTCTGCAACACTTTCCTCTGCTTCACCCTAGCCTTCTTCATGTTCTGCTACATCTTGACCTCTGATGAGCCCAAATTCAGGGTCACCGATGCCTCTCTGACCCAATTCAATTTTACCAACACCGACAACAGCACTCTCCACTACAACCTTGCACTCAACATCACCATCAGAAACTCGAACAAGAAGGTTGGCATATACTATCGTCGCATTCAAGTAATTGCTAACTATAGAAAGAAGACGTTTGCTATGGTGAATTTGACTTCCGCGCCATTTTACCAAGGCCATAAGAACACGACCACTTTGCATGCAGTTCTTGAAGGGCAGCAGTCGGTGTTGTTTGGGAAAAGTGACATTTCCCAATTTAACTCGGACACTGCTGCCAGCATTTACAGTATTGATCTGCAGCTTGCTCTTCAGGTAAGAGCCAGGTACTTTAGTTTCAAGACAGCCGAATACCCGTCTAGCAAGATCGACTGCAAACTGCGGGTTCCTTTGAGTCTTAATGAAAAATCCCCAAGTGGTTTCAATGTAACAACGTGCTGGAATGTTCATATCTTGACAGATCGTGGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

203

Amino Acids

22.86

Weight (kDa)

8.96

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	2 cut(s)	297, 517
AcsI	RAATTY	2 cut(s)	107, 286
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	5 cut(s)	142, 245, 350, 475, 559
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	4 cut(s)	21, 355, 410, 436
ApoI	RAATTY	2 cut(s)	107, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	49, 109, 187, 295
BaeI	ACNNNNGTAYC	2 cut(s)	454, 487
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	8, 367, 397, 448
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	460
BfaI	CTAG	2 cut(s)	62, 495
BfmI	CTRYAG	2 cut(s)	259, 434
BisI	GCNGC	4 cut(s)	22, 356, 411, 437
BlsI	GCNGC	4 cut(s)	23, 357, 412, 438
Bme1390I	CCNGG	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseXI	GCAGC	4 cut(s)	8, 367, 397, 448
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	430, 501, 595
BspACI	CCGC	2 cut(s)	297, 517
BspANI	GGCC	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	430, 501, 595
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	5 cut(s)	19, 32, 339, 415, 441
BstEII	GGTNACC	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	433, 504, 598
BstMBI	GATC	3 cut(s)	430, 501, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 36
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	341
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	2 cut(s)	259, 434
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	4 cut(s)	8, 367, 397, 448
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	5 cut(s)	19, 32, 339, 415, 441
CfoI	GCGC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	73, 338
CviJI	RGCY	6 cut(s)	65, 103, 315, 439, 458, 482
CviKI_1	RGCY	6 cut(s)	65, 103, 315, 439, 458, 482
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	3 cut(s)	432, 503, 597
DpnII	GATC	3 cut(s)	430, 501, 595
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	2 cut(s)	76, 341
FaiI	YATR	8 cut(s)	74, 227, 229, 261, 281, 318, 339, 585
FatI	CATG	2 cut(s)	72, 337
FauI	CCCGC	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	22, 356, 411, 437
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	4 cut(s)	22, 356, 411, 437
FspBI	CTAG	2 cut(s)	62, 495
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	22, 356, 411, 437
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	76, 341
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	529
HphI	GGTGA	4 cut(s)	49, 109, 187, 295
Hpy188I	TCNGA	4 cut(s)	97, 132, 203, 403
Hpy188III	TCNNGA	5 cut(s)	6, 88, 347, 475, 589
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	76, 211, 344
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	272, 569
HpyCH4V	TGCA	6 cut(s)	39, 185, 337, 341, 436, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 36
HpySE526I	ACGT	2 cut(s)	272, 569
Hsp92II	CATG	2 cut(s)	76, 341
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	430, 501, 595
LguI	GCTCTTC	1 cut(s)	450
LpnPI	CCDG	8 cut(s)	31, 44, 97, 427, 434, 445, 472, 559
Lsp1109I	GCAGC	4 cut(s)	8, 367, 397, 448
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	62, 495
MaeII	ACGT	2 cut(s)	272, 569
MaeIII	GTNAC	3 cut(s)	115, 380, 562
MalI	GATC	3 cut(s)	432, 503, 597
MboI	GATC	3 cut(s)	430, 501, 595
MboII	GAAGA	3 cut(s)	61, 280, 437
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	6 cut(s)	107, 137, 142, 249, 286, 392
MlyI	GAGTC	1 cut(s)	538
MnlI	CCTC	3 cut(s)	59, 103, 136
MseI	TTAA	2 cut(s)	396, 534
MspR9I	CCNGG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	27, 36
NdeII	GATC	3 cut(s)	430, 501, 595
NlaIII	CATG	2 cut(s)	76, 341
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	115, 380
NspI	RCATGY	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	240
PkrI	GCNGC	4 cut(s)	23, 357, 412, 438
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	458
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	438
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	396, 534
SatI	GCNGC	4 cut(s)	22, 356, 411, 437
Sau3AI	GATC	3 cut(s)	430, 501, 595
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	95, 183, 222, 275, 441, 453, 464, 572
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	2 cut(s)	259, 434
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	6 cut(s)	107, 137, 142, 249, 286, 392
SsiI	CCGC	2 cut(s)	297, 517
SspMI	CTAG	2 cut(s)	62, 495
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	2 cut(s)	275, 572
TaqI	TCGA	2 cut(s)	209, 504
TasI	AATT	6 cut(s)	107, 137, 142, 249, 286, 392
Tru1I	TTAA	2 cut(s)	396, 534
Tru9I	TTAA	2 cut(s)	396, 534
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	115, 380
TseI	GCWGC	4 cut(s)	21, 355, 410, 436
Tsp45I	GTSAC	2 cut(s)	115, 380
TspDTI	ATGAA	3 cut(s)	61, 552, 572
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	2 cut(s)	107, 286
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	2 cut(s)	62, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.