Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

30753325 .. 30753936

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTGGAAGGCGTGCCTGCATCGACTGCAGCTTCTGCCTATTCTGCAACACCATCCTCTGCTTCACCCTAGTCTTCTTCATAGTGTGGTTCATCTTCCTTCCCCAAGAGCCCAAATTCAGCATCACTAATGCCTCTCTAACCAATTTCGACTTCATCGGGACCACCAGAACTATCCACTACAACCTTGAGCTCAACATTACCATCAGAAACCCCAACAAGAAGGTCGACATATACTACAATAGCATCCAAGTCATTGCTAAATATAAAAAAAAGGAGTTTGCCATGCTGACTGTAGATTCCACACCATTTTACCAAGGCCACAAGAACACAACCATTTTGGATCATGTGGTACTTGAAGGGCAGCAATTGGTGGAGTTTGGGGAGCCAGAGGTTTCCAAATTTGAGGCAGAGACTGCTGCTCGGTTTTACAGTATCGATGTGCAACTTGCTCTTCAAGTAAAGCTCGGGTATGACATGTTCAAGACAAGGTATTACCAGCAGTCAGGCGGCAAGATCGATTGCAAGCTGAAGGTTCCTTTGAGACATGCTGGACGTTTCAAAACTACTAAGTGTGGAAATTTATACATGATTTCAGATCCTGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

203

Amino Acids

23.49

Weight (kDa)

8.9

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	67 - 163	6.2e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	351, 593
AcsI	RAATTY	3 cut(s)	116, 401, 580
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	354
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	359, 458, 484, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	4 cut(s)	33, 193, 466, 529
AluI	AGCT	4 cut(s)	33, 193, 466, 529
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	407, 538
AlwI	GGATC	2 cut(s)	351, 593
AlwNI	CAGNNNCTG	3 cut(s)	36, 416, 602
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	30, 364, 419
ApoI	RAATTY	3 cut(s)	116, 401, 580
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	114, 195
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	42, 376, 406
BccI	CCATC	2 cut(s)	62, 212
BcoDI	GTCTC	2 cut(s)	407, 538
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	28, 294
BisI	GCNGC	4 cut(s)	31, 365, 420, 511
BlsI	GCNGC	4 cut(s)	32, 366, 421, 512
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	163, 387, 537
BmsI	GCATC	3 cut(s)	30, 132, 255
BpiI	GAAGAC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	2 cut(s)	438, 519
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	255
BseCI	ATCGAT	2 cut(s)	438, 519
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	54, 246
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	42, 376, 406
BshFI	GGCC	1 cut(s)	321
BshVI	ATCGAT	2 cut(s)	438, 519
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	407, 538
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	114, 195
Bsp143I	GATC	3 cut(s)	343, 516, 598
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	1 cut(s)	321
BspDI	ATCGAT	2 cut(s)	438, 519
BspLI	GGNNCC	3 cut(s)	163, 387, 537
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	2 cut(s)	351, 593
BspQI	GCTCTTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	343, 516, 598
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	295, 434
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	3 cut(s)	27, 36, 416
BstC8I	GCNNGC	3 cut(s)	15, 19, 527
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	54, 246
BstKTI	GATC	3 cut(s)	346, 519, 601
BstMAI	GTCTC	2 cut(s)	407, 538
BstMBI	GATC	3 cut(s)	343, 516, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
BstNSI	RCATGY	2 cut(s)	481, 551
BstSFI	CTRYAG	2 cut(s)	28, 294
BstV1I	GCAGC	3 cut(s)	42, 376, 406
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu15I	ATCGAT	2 cut(s)	438, 519
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	2 cut(s)	438, 519
BtsCI	GGATG	2 cut(s)	54, 246
Cac8I	GCNNGC	3 cut(s)	15, 19, 527
CaiI	CAGNNNCTG	3 cut(s)	36, 416, 602
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	2 cut(s)	438, 519
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	5 cut(s)	286, 347, 478, 548, 589
CviJI	RGCY	7 cut(s)	33, 112, 193, 321, 388, 466, 529
CviKI_1	RGCY	7 cut(s)	33, 112, 193, 321, 388, 466, 529
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	345, 518, 600
DpnII	GATC	3 cut(s)	343, 516, 598
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	114, 195
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	114, 195
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	289, 350, 481, 551, 592
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	285, 346, 477, 547, 588
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	31, 365, 420, 511
FokI	GGATG	2 cut(s)	41, 233
FriOI	GRGCYC	2 cut(s)	114, 195
Fsp4HI	GCNGC	4 cut(s)	31, 365, 420, 511
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	4 cut(s)	31, 365, 420, 511
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	5 cut(s)	289, 350, 481, 551, 592
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	209, 598, 611
Hpy188III	TCNNGA	2 cut(s)	160, 484
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	5 cut(s)	3, 110, 217, 353, 526
HpyCH4III	ACNGT	2 cut(s)	295, 434
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	5 cut(s)	21, 30, 48, 445, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	5 cut(s)	289, 350, 481, 551, 592
Kzo9I	GATC	3 cut(s)	343, 516, 598
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	6 cut(s)	31, 181, 402, 492, 512, 537
Lsp1109I	GCAGC	3 cut(s)	42, 376, 406
LweI	GCATC	3 cut(s)	30, 132, 255
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	556
MalI	GATC	3 cut(s)	345, 518, 600
MboI	GATC	3 cut(s)	343, 516, 598
MboII	GAAGA	4 cut(s)	67, 70, 88, 446
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	114, 195
MluCI	AATT	5 cut(s)	116, 145, 368, 401, 580
MnlI	CCTC	4 cut(s)	68, 145, 385, 400
MunI	CAATTG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 45, 416
NdeII	GATC	3 cut(s)	343, 516, 598
NlaIII	CATG	5 cut(s)	289, 350, 481, 551, 592
NlaIV	GGNNCC	3 cut(s)	163, 387, 537
NspI	RCATGY	2 cut(s)	481, 551
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	32, 366, 421, 512
PscI	ACATGT	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	163, 387, 537
PspPI	GGNCC	1 cut(s)	162
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	3 cut(s)	36, 416, 602
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	459
SatI	GCNGC	4 cut(s)	31, 365, 420, 511
Sau3AI	GATC	3 cut(s)	343, 516, 598
Sau96I	GGNCC	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	114, 195
SfaNI	GCATC	3 cut(s)	30, 132, 255
SfcI	CTRYAG	2 cut(s)	28, 294
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	5 cut(s)	116, 145, 368, 401, 580
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	295, 434
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	5 cut(s)	24, 150, 228, 438, 519
TasI	AATT	5 cut(s)	116, 145, 368, 401, 580
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	30, 364, 419
TspDTI	ATGAA	3 cut(s)	70, 82, 145
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	3 cut(s)	116, 401, 580
XceI	RCATGY	2 cut(s)	481, 551
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.