Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

7105836 .. 7106483

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGAGGCCAAACGTTCCTGCGTCTGTCACGGCTGTGGTTCGCTGTTCTTCTCAGGCATATTCATCTTTTTCATCTGGGTCATCGTCCTTCCCCGAAACCCTAAGATCACAATCACAGATGCCCGTCTCACACAGTTCAATTTCACCAACACCGCCACCAACAGCACCCTGTACTACAACCTTGCCTTCAACCTCACCATCAGAAACCCAAACAAAAAGCTCGGCATCAGCTACCGGCGCATCCGAGTCATCGGTAACTACCAAAAGAAGCGGTTTGCCATGGTGACTCTGCCTAATACGACAGTACCGTTTTACCAAGGCCACAAGAACACCACCTTTTTGCGTGACATAGTCGTTCAAGGGCAGCAGGTGGTGAAGTTTGGGGAAAAGGAGATTTCCGAGTTCAACAAGGAGACCGCTGCCGGAATTTATAGTATTGATACGGTGCTCGCTCTTCGGGTGAAACTCAGGTTGGGCACGATCAAGTTTCACAACTATGGCCCAGAAAATATCCACTGCAAGCTGAAACTTCCTTTGAGTACTAGAAATAGTACTCTTAATCAGACATCCACAAGCAGTTTCACTCTTACAAAGTGCGGGGATGTTTCTGCGGTTACTGGTTTTTTCTTGTCTTGGTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

216

Amino Acids

24.37

Weight (kDa)

10.02

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	66 - 162	1e-05	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
AciI	CCGC	5 cut(s)	156, 274, 420, 600, 614
AclI	AACGTT	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	4 cut(s)	176, 309, 544, 556
AgsI	TTSAA	4 cut(s)	142, 193, 362, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	223, 234, 526
AluI	AGCT	3 cut(s)	223, 234, 526
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	134, 410
AoxI	GGCC	3 cut(s)	9, 322, 502
ApeKI	GCWGC	2 cut(s)	367, 422
ApoI	RAATTY	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	5 cut(s)	139, 190, 298, 388, 475
BaeGI	GKGCMC	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
Bbv12I	GWGCWC	1 cut(s)	453
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	379, 409
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	134, 410
BfaI	CTAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	368, 423
BlsI	GCNGC	2 cut(s)	369, 424
BmcAI	AGTACT	2 cut(s)	544, 556
BmgT120I	GGNCC	1 cut(s)	503
BmsI	GCATC	3 cut(s)	112, 237, 252
Bpu10I	CCTNAGC	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	282, 319
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	625
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	282, 319
BseGI	GGATG	3 cut(s)	243, 569, 610
BseJI	GATNNNNATC	1 cut(s)	113
BseMII	CTCAG	2 cut(s)	69, 484
BseNI	ACTGG	1 cut(s)	625
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	379, 409
BshFI	GGCC	3 cut(s)	11, 324, 504
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	238, 426
BsmAI	GTCTC	2 cut(s)	134, 410
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	11, 324, 504
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	453, 482
Bsp143I	GATC	2 cut(s)	108, 483
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	5 cut(s)	156, 274, 420, 600, 614
BspANI	GGCC	3 cut(s)	11, 324, 504
BspCNI	CTCAG	2 cut(s)	68, 483
BspHI	TCATGA	1 cut(s)	644
BspMI	ACCTGC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	462
BspTNI	GGTCTC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	282, 319
BssMI	GATC	2 cut(s)	108, 483
BssT1I	CCWWGG	2 cut(s)	282, 319
Bst4CI	ACNGT	4 cut(s)	138, 307, 312, 448
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	453, 524
BstDEI	CTNAG	4 cut(s)	6, 55, 105, 470
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	243, 569, 610
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	111, 486
BstMAI	GTCTC	2 cut(s)	134, 410
BstMBI	GATC	2 cut(s)	108, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	379, 409
BsuRI	GGCC	3 cut(s)	11, 324, 504
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	243, 569, 610
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	453, 524
CciI	TCATGA	1 cut(s)	644
CfoI	GCGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	175, 308, 543, 555
CviAII	CATG	2 cut(s)	283, 645
CviJI	RGCY	8 cut(s)	5, 11, 36, 223, 234, 324, 504, 526
CviKI_1	RGCY	8 cut(s)	5, 11, 36, 223, 234, 324, 504, 526
CviQI	GTAC	4 cut(s)	175, 308, 543, 555
DdeI	CTNAG	4 cut(s)	6, 55, 105, 470
DpnI	GATC	2 cut(s)	110, 485
DpnII	GATC	2 cut(s)	108, 483
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	282, 319
Eco31I	GGTCTC	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	282, 319
ErhI	CCWWGG	2 cut(s)	282, 319
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	286, 648
FaiI	YATR	6 cut(s)	62, 284, 353, 435, 501, 646
FatI	CATG	2 cut(s)	282, 644
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	2 cut(s)	368, 423
FokI	GGATG	3 cut(s)	230, 556, 617
Fsp4HI	GCNGC	2 cut(s)	368, 423
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	368, 423
HaeIII	GGCC	3 cut(s)	11, 324, 504
HapII	CCGG	2 cut(s)	238, 426
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	286, 648
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	249, 289
HpaII	CCGG	2 cut(s)	238, 426
HphI	GGTGA	5 cut(s)	139, 190, 298, 388, 475
Hpy188I	TCNGA	4 cut(s)	206, 248, 403, 567
Hpy188III	TCNNGA	1 cut(s)	645
HpyAV	CCTTC	2 cut(s)	101, 199
HpyCH4III	ACNGT	4 cut(s)	138, 307, 312, 448
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	4 cut(s)	6, 55, 105, 470
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	286, 648
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	108, 483
LguI	GCTCTTC	1 cut(s)	462
Lsp1109I	GCAGC	2 cut(s)	379, 409
LweI	GCATC	3 cut(s)	112, 237, 252
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	5 cut(s)	29, 257, 286, 347, 616
MalI	GATC	2 cut(s)	110, 485
MboI	GATC	2 cut(s)	108, 483
MboII	GAAGA	2 cut(s)	43, 449
MhlI	GDGCHC	2 cut(s)	453, 482
MluCI	AATT	2 cut(s)	142, 429
MlyI	GAGTC	2 cut(s)	258, 283
MnlI	CCTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	36, 498
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	238, 426
MwoI	GCNNNNNNNGC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	108, 483
NlaIII	CATG	2 cut(s)	286, 648
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	3 cut(s)	29, 286, 347
OliI	CACNNNNGTG	1 cut(s)	36
PagI	TCATGA	1 cut(s)	644
PaqCI	CACCTGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	369, 424
PleI	GAGTC	2 cut(s)	257, 283
PpsI	GAGTC	2 cut(s)	257, 283
Psp1406I	AACGTT	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	4 cut(s)	176, 309, 544, 556
RsaNI	GTAC	4 cut(s)	175, 308, 543, 555
RseI	CAYNNNNRTG	2 cut(s)	36, 498
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	368, 423
Sau3AI	GATC	2 cut(s)	108, 483
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	2 cut(s)	544, 556
SchI	GAGTC	2 cut(s)	258, 283
SduI	GDGCHC	2 cut(s)	453, 482
SetI	ASST	9 cut(s)	19, 186, 198, 225, 236, 341, 375, 476, 528
SfaNI	GCATC	3 cut(s)	112, 237, 252
SmiMI	CAYNNNNRTG	2 cut(s)	36, 498
Sse9I	AATT	2 cut(s)	142, 429
SsiI	CCGC	5 cut(s)	156, 274, 420, 600, 614
SspMI	CTAG	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	282, 319
TaaI	ACNGT	4 cut(s)	138, 307, 312, 448
TaiI	ACGT	1 cut(s)	19
TasI	AATT	2 cut(s)	142, 429
TatI	WGTACW	3 cut(s)	174, 542, 554
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	524
TseFI	GTSAC	3 cut(s)	29, 286, 347
TseI	GCWGC	2 cut(s)	367, 422
Tsp45I	GTSAC	3 cut(s)	29, 286, 347
TspDTI	ATGAA	3 cut(s)	55, 64, 633
TspRI	CASTG	1 cut(s)	524
Tth111I	GACNNNGTC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	429
XspI	CTAG	1 cut(s)	546
ZrmI	AGTACT	2 cut(s)	544, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.