Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

13851988 .. 13852623

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTGGAAGGAGTGGCCTCTGTTGCTTCTGCTTTTGCTTGTGCTACATCACCTACTTCTTATTCTTCCTAGCCTTCTTCATATTCTGGTCGATCTTCCTTCCCCAAGAGCCCAAATTCACCATCACCAATGCCTCTCTCACCCAATTCAATCTCACCGACACCAGCATCAACAACAACACTCTCCACTACAACCTCACCCTTGAGATCACCATCAGAAACCCTAACAAAAAAGTTGGCTTATACTACCGCCGAATCCTAGTCGTTGCTAACTACAGAAAGAAGAGGTTTGCTTTGGTGAGGTTGAATTCGACGCCGTTTTACCAAGGCCACAAGAACACCACCATTGTGAATGCAAATCTTGAAGGGCAGCAGTTGATGAGATTTAAGGAACGTGACATTTCCAACTTTAACTCGGAGACTGCAAATGGGGTTTATATCATTGATGTGAAGATTGCTCTTCGGATAGGAATCAGATTCGGCAAGGTGAAGACGGGTTACTTCAAGATTCCAAGGAAGAGCGACTGCAAGCTGAAGGTTCCTTTGAGCACTTCATTTAATGGAACATTTTGGAGTGGTTTCCAGACCACCGAGTGTCAGAGTTTTCATATGTTTGGTGACCCTGATGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

212

Amino Acids

24.46

Weight (kDa)

9.66

Isoelectric Point (pI)

23.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	116, 307
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	594
AgsI	TTSAA	4 cut(s)	151, 307, 365, 505
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	16, 328
ApeKI	GCWGC	2 cut(s)	370, 629
ApoI	RAATTY	2 cut(s)	116, 307
BanII	GRGCYC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	382, 616
BccI	CCATC	2 cut(s)	131, 221
BceAI	ACGGC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	71, 260, 634
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	371, 630
BlsI	GCNGC	2 cut(s)	372, 631
BmiI	GGNNCC	1 cut(s)	540
BmsI	GCATC	2 cut(s)	177, 616
BpiI	GAAGAC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	2 cut(s)	212, 470
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	325, 512
Bse8I	GATNNNNATC	2 cut(s)	212, 470
BseDI	CCNNGG	2 cut(s)	325, 512
BseJI	GATNNNNATC	2 cut(s)	212, 470
BseXI	GCAGC	2 cut(s)	382, 616
BshFI	GGCC	2 cut(s)	18, 330
BsiHKAI	GWGCWC	1 cut(s)	551
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	18, 330
Bsp1286I	GDGCHC	2 cut(s)	114, 551
Bsp143I	GATC	2 cut(s)	93, 207
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	18, 330
BspLI	GGNNCC	1 cut(s)	540
BspQI	GCTCTTC	2 cut(s)	465, 512
BssECI	CCNNGG	2 cut(s)	325, 512
BssMI	GATC	2 cut(s)	93, 207
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	325, 512
Bst6I	CTCTTC	3 cut(s)	278, 465, 512
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	530
BstEII	GGTNACC	1 cut(s)	617
BstKTI	GATC	2 cut(s)	96, 210
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	93, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	382, 616
BstV2I	GAAGAC	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	18, 330
Cac8I	GCNNGC	1 cut(s)	530
CseI	GACGC	1 cut(s)	322
CviJI	RGCY	6 cut(s)	18, 74, 112, 240, 330, 532
CviKI_1	RGCY	6 cut(s)	18, 74, 112, 240, 330, 532
DpnI	GATC	2 cut(s)	95, 209
DpnII	GATC	2 cut(s)	93, 207
DraIII	CACNNNGTG	1 cut(s)	594
Eam1104I	CTCTTC	3 cut(s)	278, 465, 512
EarI	CTCTTC	3 cut(s)	278, 465, 512
Eco130I	CCWWGG	2 cut(s)	325, 512
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	325, 512
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	325, 512
FaiI	YATR	5 cut(s)	83, 244, 438, 609, 611
FauNDI	CATATG	1 cut(s)	609
Fnu4HI	GCNGC	2 cut(s)	371, 630
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	371, 630
FspBI	CTAG	3 cut(s)	71, 260, 634
GluI	GCNGC	2 cut(s)	371, 630
HaeIII	GGCC	2 cut(s)	18, 330
HgaI	GACGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	314
HinfI	GANTC	4 cut(s)	255, 471, 477, 508
Hpy188I	TCNGA	5 cut(s)	218, 418, 465, 476, 600
Hpy188III	TCNNGA	3 cut(s)	362, 505, 583
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	3, 85, 110, 359, 529
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	356, 425, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	93, 207
LguI	GCTCTTC	2 cut(s)	465, 512
LpnPI	CCDG	3 cut(s)	73, 178, 596
Lsp1109I	GCAGC	2 cut(s)	382, 616
LweI	GCATC	2 cut(s)	177, 616
MaeI	CTAG	3 cut(s)	71, 260, 634
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	395, 497, 617
MalI	GATC	2 cut(s)	95, 209
MboI	GATC	2 cut(s)	93, 207
MboII	GAAGA	8 cut(s)	58, 70, 88, 295, 452, 463, 502, 529
MhlI	GDGCHC	2 cut(s)	114, 551
MluCI	AATT	3 cut(s)	116, 146, 307
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	29, 145, 206, 279, 294
MseI	TTAA	3 cut(s)	387, 411, 558
MslI	CAYNNNNRTG	2 cut(s)	347, 446
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	2 cut(s)	93, 207
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	395, 617
OliI	CACNNNNGTG	1 cut(s)	347
PciSI	GCTCTTC	2 cut(s)	465, 512
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	4 cut(s)	255, 471, 477, 508
PkrI	GCNGC	2 cut(s)	372, 631
PspEI	GGTNACC	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	347, 446
SapI	GCTCTTC	2 cut(s)	465, 512
SaqAI	TTAA	3 cut(s)	387, 411, 558
SatI	GCNGC	2 cut(s)	371, 630
Sau3AI	GATC	2 cut(s)	93, 207
SduI	GDGCHC	2 cut(s)	114, 551
SetI	ASST	8 cut(s)	56, 198, 290, 305, 397, 489, 534, 540
SfaNI	GCATC	2 cut(s)	177, 616
SfcI	CTRYAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	347, 446
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	116, 146, 307
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	3 cut(s)	71, 260, 634
StyI	CCWWGG	2 cut(s)	325, 512
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	92, 311
TasI	AATT	3 cut(s)	116, 146, 307
TfiI	GAWTC	4 cut(s)	255, 471, 477, 508
Tru1I	TTAA	3 cut(s)	387, 411, 558
Tru9I	TTAA	3 cut(s)	387, 411, 558
TseFI	GTSAC	2 cut(s)	395, 617
TseI	GCWGC	2 cut(s)	370, 629
Tsp45I	GTSAC	2 cut(s)	395, 617
TspDTI	ATGAA	3 cut(s)	70, 543, 596
XapI	RAATTY	2 cut(s)	116, 307
XspI	CTAG	3 cut(s)	71, 260, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.