Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

12277331 .. 12277954

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACTGGAAGGCGTGCGTGCATCGACTGCAGCTTCTTCCTATTCTGCAACACCATCCTCTGCTTCACCCTAGTCTTCTTTGTAGTGTGGTCCATTTTCCTTCCTGAAGAGCCCAAGTTCAGTATTACTAATGCCTCTATAACCCAATTCGACTTCGCCAAAACCAACAAAACTCTCCACTACAACCTTGAGCTCAACATTACCATTAGAAACCAAAACAACAAGGTGGACATATACTACAATGACATCCAAGTCATTGCTAACTATGGAAAAAAGAGGTTTGCCATGCGTACTTTGGATTCCACACCCTTTCACCAAGGCCACAAGAACACAACCATTTTGAATCATGTGGTACTTGAAGGTCAGCAATTGGTACAGTTTGGTGACACAGAGCTTTCCCAATTGAAGGCAGAGACCGATACTGGTTTTTACAGTATTGATGTGCTGCTTGCTCTTCGAGTAAAGGTTGGGTATGACATCTTCAAGACAAGGTATTACCAGCAGTCAGGCAGCAAGATCAACTGCAAGCTGAAGGTCCCTTCGAATTTTAATGAAAAGTTTTCTGGACGTTTCAAAACTACCAAGTGCGGAAATGTATATATCATGTCAGATCCTGTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

208

Amino Acids

23.87

Weight (kDa)

9.08

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	67 - 163	6.3e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	126, 551
AfaI	GTAC	3 cut(s)	292, 354, 375
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	5 cut(s)	343, 359, 406, 484, 574
AluBI	AGCT	4 cut(s)	33, 193, 394, 529
AluI	AGCT	4 cut(s)	33, 193, 394, 529
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	30, 445, 510
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	90, 535
AsuHPI	GGTGA	3 cut(s)	58, 305, 395
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	90, 535
BanII	GRGCYC	2 cut(s)	114, 195
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	42, 432, 522
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	3 cut(s)	31, 446, 511
BlsI	GCNGC	3 cut(s)	32, 447, 512
Bme18I	GGWCC	2 cut(s)	90, 535
BmgT120I	GGNCC	2 cut(s)	90, 535
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	10, 427
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	54, 246
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	10, 427
BseXI	GCAGC	3 cut(s)	42, 432, 522
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	114, 195
Bsp143I	GATC	2 cut(s)	516, 610
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	2 cut(s)	102, 459
BspT104I	TTCGAA	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	10, 427
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	516, 610
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	378, 434
Bst6I	CTCTTC	2 cut(s)	102, 459
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	4 cut(s)	15, 19, 450, 527
BstF5I	GGATG	2 cut(s)	54, 246
BstKTI	GATC	2 cut(s)	519, 613
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	2 cut(s)	516, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	42, 432, 522
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	54, 246
Cac8I	GCNNGC	4 cut(s)	15, 19, 450, 527
CaiI	CAGNNNCTG	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	90, 535
Csp6I	GTAC	3 cut(s)	291, 353, 374
CviAII	CATG	3 cut(s)	286, 347, 604
CviJI	RGCY	6 cut(s)	33, 112, 193, 321, 394, 529
CviKI_1	RGCY	6 cut(s)	33, 112, 193, 321, 394, 529
CviQI	GTAC	3 cut(s)	291, 353, 374
DpnI	GATC	2 cut(s)	518, 612
DpnII	GATC	2 cut(s)	516, 610
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	102, 459
EarI	CTCTTC	2 cut(s)	102, 459
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	114, 195
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	90, 535
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	126, 551
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	114, 195
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	3 cut(s)	289, 350, 607
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	285, 346, 603
Fnu4HI	GCNGC	3 cut(s)	31, 446, 511
FokI	GGATG	2 cut(s)	41, 233
FriOI	GRGCYC	2 cut(s)	114, 195
Fsp4HI	GCNGC	3 cut(s)	31, 446, 511
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	31, 446, 511
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	3 cut(s)	289, 350, 607
HinfI	GANTC	2 cut(s)	299, 343
HphI	GGTGA	3 cut(s)	58, 305, 395
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	3 cut(s)	104, 484, 564
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	6 cut(s)	3, 110, 353, 400, 526, 549
HpyCH4III	ACNGT	2 cut(s)	378, 434
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	4 cut(s)	21, 30, 48, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	3 cut(s)	289, 350, 607
Kzo9I	GATC	2 cut(s)	516, 610
LguI	GCTCTTC	2 cut(s)	102, 459
LpnPI	CCDG	5 cut(s)	117, 408, 492, 512, 549
Lsp1109I	GCAGC	3 cut(s)	42, 432, 522
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	518, 612
MboI	GATC	2 cut(s)	516, 610
MboII	GAAGA	5 cut(s)	28, 67, 119, 446, 472
MfeI	CAATTG	2 cut(s)	368, 401
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	114, 195
MluCI	AATT	4 cut(s)	146, 368, 401, 544
MnlI	CCTC	3 cut(s)	68, 145, 270
MseI	TTAA	1 cut(s)	549
MunI	CAATTG	2 cut(s)	368, 401
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	516, 610
NlaIII	CATG	3 cut(s)	289, 350, 607
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	383
NspV	TTCGAA	1 cut(s)	542
PciSI	GCTCTTC	2 cut(s)	102, 459
PfeI	GAWTC	2 cut(s)	299, 343
PkrI	GCNGC	3 cut(s)	32, 447, 512
PpuMI	RGGWCCY	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	90, 535
PspPPI	RGGWCCY	1 cut(s)	535
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	3 cut(s)	292, 354, 375
RsaNI	GTAC	3 cut(s)	291, 353, 374
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	2 cut(s)	102, 459
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	31, 446, 511
Sau3AI	GATC	2 cut(s)	516, 610
Sau96I	GGNCC	2 cut(s)	90, 535
SduI	GDGCHC	2 cut(s)	114, 195
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	2 cut(s)	90, 535
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	146, 368, 401, 544
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	378, 434
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	4 cut(s)	24, 150, 457, 542
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	4 cut(s)	146, 368, 401, 544
TfiI	GAWTC	2 cut(s)	299, 343
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	30, 445, 510
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	90, 535
XapI	RAATTY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.