Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

30967597 .. 30968370

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTAGAAGGTGTGGTTGCCGCTTTAACGGCTGCCCTTGCTGCTTCTGGATATACTACTGCATCATCCTCTGCTTCAGTCTGCCCTTCGTGATATTCGGGTTCATCTTCTTTCCCCAAGAGCCCAAATTCACAATCACCAATGCCACTCTAACCCAATTCAATTTCAACAGTTCCAACAACACCCTCGATTACAAACTCGCACTCAACATGACCATCAGAAACCCTAACAAGAGGGTTGGCATATATTACCGCCGCATCCAAGTCATTGCTAACTACCGAAAAAAGAGATTTTCTTTCGTCACTTTGACTACTTTGCCGTTCTACCAAGGCCACAAAAACACCACCGATTTGCATCAACTGGTTGTTCAAGGGTCGCAACTGGTGAAGTTTGGAAAACGCGAGGTGTCCCAGTTTAACTCGGAGACTGCTTCCGGGATGTATAGTATAAACGTGCAGCTCGCTCTTCGGATAAAAGCCAGGTACGGCAAATTCAAGTCGCGCAATTACAAGCCGTATAGGAAGATTGACTGCAAGCTGAAGGTTCCTTTGAGTTTTAATGAAACGTCAACGGCCATTGGTTTTAAGGCTACAAGGTGTGGAAATGTTCACTTCTTTTCAGATCCTGATGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

213

Amino Acids

24.65

Weight (kDa)

9.9

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	71 - 168	1e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	402, 502
AciI	CCGC	3 cut(s)	22, 253, 256
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	128, 491
AcuI	CTGAAG	2 cut(s)	61, 560
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	163, 169, 371, 496
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	2 cut(s)	460, 538
AluI	AGCT	2 cut(s)	460, 538
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	617
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	331, 573
ApeKI	GCWGC	3 cut(s)	33, 42, 457
ApoI	RAATTY	2 cut(s)	128, 491
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	130, 397
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	20, 29, 469
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	5 cut(s)	46, 304, 499, 502, 588
BciT130I	CCWGG	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	22, 34, 43, 256, 458
BlsI	GCNGC	5 cut(s)	23, 35, 44, 257, 459
Bme1390I	CCNGG	2 cut(s)	436, 481
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	436, 481
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	4 cut(s)	72, 267, 364, 619
BmuI	ACTGGG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	366, 387, 412
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	66, 258, 444
BseJI	GATNNNNATC	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	366, 387, 412
BseXI	GCAGC	3 cut(s)	20, 29, 469
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	402, 502
BshFI	GGCC	2 cut(s)	333, 575
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	333, 575
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	3 cut(s)	22, 253, 256
BspANI	GGCC	2 cut(s)	333, 575
BspFNI	CGCG	2 cut(s)	402, 502
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	617
BspQI	GCTCTTC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	366, 387, 412
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	462, 536
BstF5I	GGATG	3 cut(s)	66, 258, 444
BstFNI	CGCG	2 cut(s)	402, 502
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 39, 42
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	434, 479
BstUI	CGCG	2 cut(s)	402, 502
BstV1I	GCAGC	3 cut(s)	20, 29, 469
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	333, 575
BtsCI	GGATG	3 cut(s)	66, 258, 444
Cac8I	GCNNGC	2 cut(s)	462, 536
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	9 cut(s)	33, 124, 333, 460, 479, 514, 538, 575, 590
CviKI_1	RGCY	9 cut(s)	33, 124, 333, 460, 479, 514, 538, 575, 590
CviQI	GTAC	1 cut(s)	484
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	61, 560
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	214
FaiI	YATR	7 cut(s)	55, 212, 245, 247, 444, 449, 519
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	22, 34, 43, 256, 458
FokI	GGATG	3 cut(s)	53, 245, 451
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	22, 34, 43, 256, 458
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	22, 34, 43, 256, 458
HaeIII	GGCC	2 cut(s)	333, 575
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	130, 397
Hpy166II	GTNNAC	2 cut(s)	570, 610
Hpy188I	TCNGA	4 cut(s)	221, 424, 471, 622
Hpy188III	TCNNGA	4 cut(s)	6, 49, 91, 626
Hpy8I	GTNNAC	2 cut(s)	570, 610
HpyAV	CCTTC	3 cut(s)	3, 97, 535
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	453, 566
HpyCH4V	TGCA	5 cut(s)	63, 355, 457, 534, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 39, 42
HpySE526I	ACGT	2 cut(s)	453, 566
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	622
LguI	GCTCTTC	1 cut(s)	471
LpnPI	CCDG	7 cut(s)	34, 347, 368, 425, 448, 466, 493
Lsp1109I	GCAGC	3 cut(s)	20, 29, 469
LweI	GCATC	4 cut(s)	72, 267, 364, 619
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	453, 566
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	3 cut(s)	100, 458, 535
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	5 cut(s)	128, 158, 163, 491, 505
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	80, 197, 228, 397
MseI	TTAA	4 cut(s)	27, 417, 558, 585
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	436, 481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	2 cut(s)	402, 502
MwoI	GCNNNNNNNGC	3 cut(s)	30, 39, 42
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	471
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	5 cut(s)	23, 35, 44, 257, 459
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	27, 417, 558, 585
SatI	GCNGC	5 cut(s)	22, 34, 43, 256, 458
Sau3AI	GATC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	436, 481
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	9 cut(s)	14, 408, 456, 462, 485, 540, 546, 569, 599
SfaNI	GCATC	4 cut(s)	72, 267, 364, 619
Sse9I	AATT	5 cut(s)	128, 158, 163, 491, 505
SsiI	CCGC	3 cut(s)	22, 253, 256
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	434, 479
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	2 cut(s)	456, 569
TaqI	TCGA	1 cut(s)	189
TasI	AATT	5 cut(s)	128, 158, 163, 491, 505
TauI	GCSGC	2 cut(s)	24, 258
Tru1I	TTAA	4 cut(s)	27, 417, 558, 585
Tru9I	TTAA	4 cut(s)	27, 417, 558, 585
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	33, 42, 457
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	94, 576
XapI	RAATTY	2 cut(s)	128, 491
XbaI	TCTAGA	1 cut(s)	5
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.