Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

13833912 .. 13834538

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTCGAAGGCATCGCTGCTGCGCCTGCTCCTTCTGCGTGTTCTACAACATCGTCCTCTGCTTCCTCCTGTCCCTCCTCATATTCTGGTTGATCTTCCTTCCCAAAGAGCCCAAATTCATAGTCACAAATGCCTCTCTCACGCAATTTGATTTCTCCACCACTAACAACACTCTCTTCTACAACCTTGCCCTCAACATCACCATCCGAAACCCCAACAGAAGGGTTGGCATATACTACAACCGCATCGAAGCCATTGCTAACTACAGAAAGAACAGGTTTGCTTTGGTCACGTTGACTTCAACGCCATTTTACCAAGGCCACAAGAACACCACCACTTTACAACAAGTCCTTGTTGAAGGGCAGCAGGTTGTGGTGTTTGGAGAACATGACATTTCCAAGTTTAACTCTGAGACAGCTGCTGGTGTTTATAGCATTGATGTGCAGCTTGCTGTTAAGGTTCGAGTCAGGTTTGGAAAATTTAAGACAGACTATTACACGCCGTCACGGAACATCAACTGCAAGCTGAAGGTTCCTTTGAGTCTTAAACAAACCTCTGCTGATGGTTTCGAGACTACAAAGTGTGGGAATGTTAACATCTTCTCAGATCCTGATAGTGCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

209

Amino Acids

23.72

Weight (kDa)

9.47

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	602
AcsI	RAATTY	2 cut(s)	116, 479
AcuI	CTGAAG	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	303, 359
AluBI	AGCT	3 cut(s)	419, 448, 526
AluI	AGCT	3 cut(s)	419, 448, 526
Alw26I	GTCTC	3 cut(s)	9, 407, 566
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	2 cut(s)	422, 611
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	5 cut(s)	18, 21, 364, 419, 445
ApoI	RAATTY	2 cut(s)	116, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	5, 8, 376, 406, 457
BccI	CCATC	2 cut(s)	212, 557
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcoDI	GTCTC	3 cut(s)	9, 407, 566
BfmI	CTRYAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	5 cut(s)	19, 22, 365, 420, 446
BlsI	GCNGC	5 cut(s)	20, 23, 366, 421, 447
BmiI	GGNNCC	1 cut(s)	534
BmsI	GCATC	2 cut(s)	22, 255
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	402, 618
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	5, 8, 376, 406, 457
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	3 cut(s)	9, 407, 566
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	93, 607
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	403, 617
BspLI	GGNNCC	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	93, 607
BssT1I	CCWWGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	28, 450, 524, 622
BstDEI	CTNAG	2 cut(s)	411, 604
BstF5I	GGATG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	96, 610
BstMAI	GTCTC	3 cut(s)	9, 407, 566
BstMBI	GATC	2 cut(s)	93, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 36
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	5 cut(s)	5, 8, 376, 406, 457
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	4 cut(s)	28, 450, 524, 622
CaiI	CAGNNNCTG	2 cut(s)	422, 611
CfoI	GCGC	1 cut(s)	26
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	7 cut(s)	112, 254, 321, 419, 448, 526, 624
CviKI_1	RGCY	7 cut(s)	112, 254, 321, 419, 448, 526, 624
DdeI	CTNAG	2 cut(s)	411, 604
DpnI	GATC	2 cut(s)	95, 609
DpnII	GATC	2 cut(s)	93, 607
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	392
FaiI	YATR	6 cut(s)	83, 122, 233, 235, 390, 432
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	388
Fnu4HI	GCNGC	5 cut(s)	19, 22, 365, 420, 446
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	19, 22, 365, 420, 446
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	19, 22, 365, 420, 446
HaeIII	GGCC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	392
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	2 cut(s)	297, 595
HindII	GTYRAC	2 cut(s)	297, 595
HinfI	GANTC	2 cut(s)	465, 541
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	297, 595
Hpy188I	TCNGA	3 cut(s)	209, 412, 607
Hpy188III	TCNNGA	3 cut(s)	6, 571, 611
Hpy8I	GTNNAC	2 cut(s)	297, 595
HpyAV	CCTTC	6 cut(s)	3, 43, 110, 216, 353, 523
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	445, 522, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 36
HpyF3I	CTNAG	2 cut(s)	411, 604
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	392
HspAI	GCGC	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	93, 607
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	40, 73, 83, 262, 353, 408, 454, 606
Lsp1109I	GCAGC	5 cut(s)	5, 8, 376, 406, 457
LweI	GCATC	2 cut(s)	22, 255
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	124, 289, 504
MalI	GATC	2 cut(s)	95, 609
MboI	GATC	2 cut(s)	93, 607
MboII	GAAGA	3 cut(s)	88, 169, 592
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	116, 146, 479
MlyI	GAGTC	2 cut(s)	474, 550
MnlI	CCTC	7 cut(s)	68, 77, 86, 89, 145, 203, 565
MseI	TTAA	5 cut(s)	405, 456, 483, 546, 594
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	27, 36
NdeII	GATC	2 cut(s)	93, 607
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	3 cut(s)	124, 289, 504
PkrI	GCNGC	5 cut(s)	20, 23, 366, 421, 447
PleI	GAGTC	2 cut(s)	473, 549
PpsI	GAGTC	2 cut(s)	473, 549
PspN4I	GGNNCC	1 cut(s)	534
PstNI	CAGNNNCTG	2 cut(s)	422, 611
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	5 cut(s)	405, 456, 483, 546, 594
SatI	GCNGC	5 cut(s)	19, 22, 365, 420, 446
Sau3AI	GATC	2 cut(s)	93, 607
SchI	GAGTC	2 cut(s)	474, 550
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	22, 255
SfcI	CTRYAG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	116, 146, 479
SsiI	CCGC	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	4 cut(s)	7, 249, 463, 570
TasI	AATT	3 cut(s)	116, 146, 479
Tru1I	TTAA	5 cut(s)	405, 456, 483, 546, 594
Tru9I	TTAA	5 cut(s)	405, 456, 483, 546, 594
TseFI	GTSAC	3 cut(s)	124, 289, 504
TseI	GCWGC	5 cut(s)	18, 21, 364, 419, 445
Tsp45I	GTSAC	3 cut(s)	124, 289, 504
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	523
XapI	RAATTY	2 cut(s)	116, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.