Rh6BG088600

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001039
Physical Location & Seq
Forward (+)
13825179 .. 13825478
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG088600.1

Sequence Viewer

Length: 300 bp
ATGAAGTTTGGGAATGGCGAAATTTCCCAATTCAACAAGGAGACTGCTGCCGGGGTTTACAATATTGACTTGCAGCTTGCTCTTCGGATAAAAGCCAGGTTCGGCAAGTTGAAGACATGCAATTACAAGCCTTATCGCAAGATCGATTGCAGACTTAAGGTTCCATTGAGTCTCAATGGAACAAATGCAAATGGCTTCAAGGCTAACAAGTGTGGCAACGTTTATTTCTTTCACAATCCTGATATTGATGAAGATATCCATTCTATTATCTCAATTGTCGAAGTGTTGATTGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

9.05

Isoelectric Point (pI)

14.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 219
AcsI RAATTY 1 cut(s) 21
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 34, 112, 199
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 35, 176
ApeKI GCWGC 2 cut(s) 47, 73
ApoI RAATTY 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 34, 85
BciT130I CCWGG 1 cut(s) 97
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 35, 176
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 2 cut(s) 48, 74
BlsI GCNGC 2 cut(s) 49, 75
Bme1390I CCNGG 2 cut(s) 52, 97
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 52, 97
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 34, 85
BshVI ATCGAT 1 cut(s) 144
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 35, 176
Bsp143I GATC 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 144
BspHI TCATGA 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 87
BspTI CTTAAG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 35, 176
BstMBI GATC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 50, 95
BstV1I GCAGC 2 cut(s) 34, 85
BstV2I GAAGAC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 144
CviAII CATG 2 cut(s) 117, 297
CviJI RGCY 5 cut(s) 76, 95, 130, 195, 203
CviKI_1 RGCY 5 cut(s) 76, 95, 130, 195, 203
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 256
FaeI CATG 2 cut(s) 120, 300
FaiI YATR 2 cut(s) 118, 298
FatI CATG 2 cut(s) 116, 296
Fnu4HI GCNGC 2 cut(s) 48, 74
Fsp4HI GCNGC 2 cut(s) 48, 74
GluI GCNGC 2 cut(s) 48, 74
HapII CCGG 1 cut(s) 51
Hin1II CATG 2 cut(s) 120, 300
HinfI GANTC 2 cut(s) 169, 293
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 239, 297
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 73, 120, 150, 188
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 120, 300
Kzo9I GATC 1 cut(s) 141
LguI GCTCTTC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 64, 82, 109, 252
Lsp1109I GCAGC 2 cut(s) 34, 85
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 74, 124, 263
MfeI CAATTG 1 cut(s) 273
MluCI AATT 4 cut(s) 21, 29, 121, 273
MlyI GAGTC 1 cut(s) 178
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 97
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 52
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 120, 300
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 120
PagI TCATGA 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 49, 75
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 48, 74
Sau3AI GATC 1 cut(s) 141
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 2 cut(s) 52, 97
SetI ASST 4 cut(s) 78, 101, 162, 222
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 21, 29, 121, 273
SspI AATATT 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 50, 95
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 144, 279
TasI AATT 4 cut(s) 21, 29, 121, 273
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 2 cut(s) 47, 73
TspDTI ATGAA 3 cut(s) 17, 264, 285
Vha464I CTTAAG 1 cut(s) 155
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.