Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

2029728 .. 2030372

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1022000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCAAAATTCAGATGGGTTAGAAAGTGGCGTCCCCTACGGATCTGCTCCTTCTGCTTGTTCAACAGCATCTTCCTGGGTTCCCTCCTCTCCCTCCTTATATTCTGGTTGATCTTCCTTCCCAAAGAGCTGAACTTCTTCGACACTAATGCCACTCTCACCCAATTCGATTTCACCAACGCCACCAACACTCTCCATTACAACCTCGCGCTCAACATCACCTTCCGAAACCCCAACAGATGGGTTGGCTTTTACTACAACTGCATCGAAGCCATTGCTAACTATAGGTTGAAGAGGTTTACTTTGGTGACATTGACTTCGACTCCATTTTACCAAGGCCACAAGAACACCACCGTCTTAAAACAAGTATTTCTTGAAGGGCAGGGGGAGGTGGTGTTTGGGCAAAATGACATCTCCAATTTTAACTCGGAGACTGCTGCCGGTGTATACAACATCGATATTCAGCTTGTTGTAAAAGTAAGTGTTAAGTTTGGCGAGTTGAAGACAAGCTATTACACGCCGTCACGGAAAATCAACTGCAAGCTGAAGGTTCCTTCGAATGTTAATGAAACCTCTGCTGGTGGTTTCAATATTACTAAGTGTGGGAATGTTAAAATCTTTTCTGATCCTGATACTTCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

215

Amino Acids

24.5

Weight (kDa)

9.49

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	1 cut(s)	209
AclWI	GGATC	2 cut(s)	50, 620
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	566, 621
AcyI	GRCGYC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	64, 292, 377, 502, 589
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	4 cut(s)	130, 466, 510, 544
AluI	AGCT	4 cut(s)	130, 466, 510, 544
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	50, 620
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	151, 166, 211, 319
AsuII	TTCGAA	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	9, 234
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	4 cut(s)	131, 165, 257, 291
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	82, 552
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	78, 273
BpiI	GAAGAC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	557
Bsa29I	ATCGAT	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	76, 334
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	76, 334
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	42, 111, 625
BspANI	GGCC	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	82, 552
BspPI	GGATC	2 cut(s)	50, 620
BspT104I	TTCGAA	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	76, 334
BssMI	GATC	3 cut(s)	42, 111, 625
BssNAI	GTATAC	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	45, 114, 628
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	3 cut(s)	42, 111, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BstZ17I	GTATAC	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	542
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	8 cut(s)	130, 249, 272, 339, 466, 510, 544, 642
CviKI_1	RGCY	8 cut(s)	130, 249, 272, 339, 466, 510, 544, 642
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	44, 113, 627
DpnII	GATC	3 cut(s)	42, 111, 625
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	566, 621
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaiI	YATR	3 cut(s)	101, 285, 448
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	4 cut(s)	151, 166, 211, 319
Hpy166II	GTNNAC	2 cut(s)	300, 448
Hpy188I	TCNGA	4 cut(s)	14, 227, 430, 625
Hpy188III	TCNNGA	2 cut(s)	374, 629
Hpy8I	GTNNAC	2 cut(s)	300, 448
HpyAV	CCTTC	6 cut(s)	61, 128, 232, 371, 541, 564
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	264, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	597
Hsp92I	GRCGYC	1 cut(s)	31
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	42, 111, 625
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	7 cut(s)	62, 89, 91, 368, 454, 564, 624
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	78, 273
MaeIII	GTNAC	2 cut(s)	307, 522
MalI	GATC	3 cut(s)	44, 113, 627
MboI	GATC	3 cut(s)	42, 111, 625
MboII	GAAGA	5 cut(s)	64, 106, 130, 304, 514
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	3 cut(s)	8, 164, 418
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	7 cut(s)	95, 98, 104, 215, 288, 382, 583
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	5 cut(s)	359, 423, 486, 564, 612
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	3 cut(s)	42, 111, 625
NlaIV	GGNNCC	2 cut(s)	82, 552
NmuCI	GTSAC	2 cut(s)	307, 522
NspV	TTCGAA	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	82, 552
PsuI	RGATCY	1 cut(s)	42
SaqAI	TTAA	5 cut(s)	359, 423, 486, 564, 612
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	3 cut(s)	42, 111, 625
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	2 cut(s)	78, 273
SfcI	CTRYAG	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	557
Sse9I	AATT	3 cut(s)	8, 164, 418
SspI	AATATT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	6 cut(s)	141, 168, 267, 320, 456, 557
TasI	AATT	3 cut(s)	8, 164, 418
Tru1I	TTAA	5 cut(s)	359, 423, 486, 564, 612
Tru9I	TTAA	5 cut(s)	359, 423, 486, 564, 612
TseFI	GTSAC	2 cut(s)	307, 522
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	2 cut(s)	307, 522
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	2 cut(s)	55, 541
Van91I	CCANNNNNTGG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.