Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Reverse (-)

30960706 .. 30961308

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACTGAAAGGCGTGCCTGCATCGACTGCAGCTTCTGCCTATTCTGCAACACCATCCTCTGCTTCACCCTAGTCTTCTTCATAGTGTGGTTCATCTTCCTTCCCCAAGAGCCCAAATTCAGCATCACTAATGCCTCTCTAACCCATTTCGACTTCATCGAGACCAACAAAACTCTCCACTACAACCTTGAGCTCAACATTACCATCACAAACCCCAATAAGAATGTCGACATATACTACAATGGCATCCAAGTCATTGCTAACTATAAAAAGAAGGAGTTTGCCATGCTGACTTTAGATTCCACACCATTTTACCAAGGCCACAAGAACACAACCATTTTGGATCATGTGGTACTTGAAGGGCAGAAATCGGTGGAGTTCAAGGAGCCAGAGGTTTCCCGATTTAAGGCAGCTGATTTTTATAGTATTGACGTGCAGCTTGCTCTTCGAGTAAAGCTCAGGTATGACATGTTCAAGACAAGGTATTACCAGCAGTCAGGCGGCAAGATCGACTGCAAGCTGAAGGTTCCTTTGAGACATGCTAGACGTTTCAAAACTACTAAGTGTGGAAATGTATACATTATTTCAGATCCTGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

201

Amino Acids

23.47

Weight (kDa)

9.01

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	67 - 160	8.5e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	228, 576
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	2 cut(s)	351, 584
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	4 cut(s)	359, 382, 475, 553
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	6 cut(s)	33, 193, 413, 439, 457, 520
AluI	AGCT	6 cut(s)	33, 193, 413, 439, 457, 520
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	155, 529
AlwI	GGATC	2 cut(s)	351, 584
AlwNI	CAGNNNCTG	2 cut(s)	36, 593
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	30, 410, 436
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	114, 195
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	42, 422, 448
BccI	CCATC	2 cut(s)	62, 212
BcoDI	GTCTC	2 cut(s)	155, 529
BfaI	CTAG	2 cut(s)	71, 543
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	4 cut(s)	31, 411, 437, 502
BlsI	GCNGC	4 cut(s)	32, 412, 438, 503
BmgBI	CACGTC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	387, 528
BmsI	GCATC	3 cut(s)	30, 132, 255
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bpu10I	CCTNAGC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	54, 246
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	42, 422, 448
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	155, 529
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	114, 195
Bsp143I	GATC	3 cut(s)	343, 507, 589
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	387, 528
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	2 cut(s)	351, 584
BspQI	GCTCTTC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	343, 507, 589
BssNAI	GTATAC	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	2 cut(s)	27, 36
BstC8I	GCNNGC	4 cut(s)	15, 19, 441, 518
BstDEI	CTNAG	2 cut(s)	458, 561
BstF5I	GGATG	2 cut(s)	54, 246
BstKTI	GATC	3 cut(s)	346, 510, 592
BstMAI	GTCTC	2 cut(s)	155, 529
BstMBI	GATC	3 cut(s)	343, 507, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
BstNSI	RCATGY	2 cut(s)	472, 542
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	42, 422, 448
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BstZ17I	GTATAC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	54, 246
Cac8I	GCNNGC	4 cut(s)	15, 19, 441, 518
CaiI	CAGNNNCTG	2 cut(s)	36, 593
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	4 cut(s)	286, 347, 469, 539
CviJI	RGCY	9 cut(s)	33, 112, 193, 321, 388, 413, 439, 457, 520
CviKI_1	RGCY	9 cut(s)	33, 112, 193, 321, 388, 413, 439, 457, 520
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	2 cut(s)	458, 561
DpnI	GATC	3 cut(s)	345, 509, 591
DpnII	GATC	3 cut(s)	343, 507, 589
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	114, 195
Eco31I	GGTCTC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	114, 195
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	289, 350, 472, 542
FatI	CATG	4 cut(s)	285, 346, 468, 538
FblI	GTMKAC	2 cut(s)	228, 576
Fnu4HI	GCNGC	4 cut(s)	31, 411, 437, 502
FokI	GGATG	2 cut(s)	41, 233
FriOI	GRGCYC	2 cut(s)	114, 195
Fsp4HI	GCNGC	4 cut(s)	31, 411, 437, 502
FspBI	CTAG	2 cut(s)	71, 543
GluI	GCNGC	4 cut(s)	31, 411, 437, 502
HaeIII	GGCC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	289, 350, 472, 542
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	229, 577
Hpy188I	TCNGA	1 cut(s)	589
Hpy188III	TCNNGA	3 cut(s)	160, 399, 475
Hpy8I	GTNNAC	2 cut(s)	229, 577
HpyAV	CCTTC	4 cut(s)	110, 268, 353, 517
HpyCH4IV	ACGT	2 cut(s)	432, 547
HpyCH4V	TGCA	5 cut(s)	21, 30, 48, 436, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
HpyF3I	CTNAG	2 cut(s)	458, 561
HpySE526I	ACGT	2 cut(s)	432, 547
Hsp92II	CATG	4 cut(s)	289, 350, 472, 542
Kzo9I	GATC	3 cut(s)	343, 507, 589
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	5 cut(s)	31, 402, 445, 483, 503
Lsp1109I	GCAGC	3 cut(s)	42, 422, 448
LweI	GCATC	3 cut(s)	30, 132, 255
MaeI	CTAG	2 cut(s)	71, 543
MaeII	ACGT	2 cut(s)	432, 547
MalI	GATC	3 cut(s)	345, 509, 591
MboI	GATC	3 cut(s)	343, 507, 589
MboII	GAAGA	4 cut(s)	67, 70, 88, 437
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	114, 195
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	3 cut(s)	68, 145, 385
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
NdeII	GATC	3 cut(s)	343, 507, 589
NlaIII	CATG	4 cut(s)	289, 350, 472, 542
NlaIV	GGNNCC	2 cut(s)	387, 528
NspI	RCATGY	2 cut(s)	472, 542
PciI	ACATGT	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	32, 412, 438, 503
PscI	ACATGT	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	387, 528
PsrI	GAACNNNNNNTAC	2 cut(s)	455, 487
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	2 cut(s)	36, 593
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	31, 411, 437, 502
Sau3AI	GATC	3 cut(s)	343, 507, 589
SduI	GDGCHC	2 cut(s)	114, 195
SfaNI	GCATC	3 cut(s)	30, 132, 255
SfcI	CTRYAG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	2 cut(s)	71, 543
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	2 cut(s)	435, 550
TaqI	TCGA	6 cut(s)	24, 150, 159, 228, 448, 510
TasI	AATT	1 cut(s)	116
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseI	GCWGC	3 cut(s)	30, 410, 436
TspDTI	ATGAA	3 cut(s)	70, 82, 145
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	2 cut(s)	472, 542
XmiI	GTMKAC	2 cut(s)	228, 576
XspI	CTAG	2 cut(s)	71, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.