Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

183104 .. 189149

Gene Structure 6046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGCTTCTCGATTTGGGGATTTCACGGGTACTCAATTAGCCACTTCGACAATCCAATCTTGCTTAGATTCATTCAGTTTACTTCGACATCCATAACTGTTCTTCGAATTACAGAACATTATCACTACCGTCGCATCCGAGTCATTGGTAACTACCAAAAGAAGAGGTTTGCCCTCGTGACTTTGTCTAATACTACAGTACCGTTTTACCAAGGCCACAAGAACACCACCTTTTTGAGTGACATAATTGTTCAAGGGCAGCAGGTGGTGAAGTTTGGGGAAAAGGAGATTTCCGAGTTTAACAAGGAGACTGCTGCCGGAATTTACAGTATTGATGCAGTGCTCGCTCTTCGGGTGAAACTCAGGTTGGGCAAGATAAAGTTTCACAACTATGGCCCCGACAATATCCACTGCAAGCTGAAACTTCCTTTGAGTGCTAGAAATAGTACTTCTAATAGATTGGTAAGGTTTCTGGGGTTCTTACTTTGCTGCTCTAGAGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

168

Amino Acids

19.29

Weight (kDa)

10.1

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	3 cut(s)	32, 201, 448
AgsI	TTSAA	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	214, 394
ApeKI	GCWGC	3 cut(s)	259, 314, 489
ApoI	RAATTY	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	280, 367
AsuII	TTCGAA	1 cut(s)	106
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	271, 301, 476
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	438, 495
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	3 cut(s)	260, 315, 490
BlsI	GCNGC	3 cut(s)	261, 316, 491
BmcAI	AGTACT	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	2 cut(s)	144, 325
Bpu14I	TTCGAA	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	89, 135
BseMII	CTCAG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	271, 301, 476
BshFI	GGCC	2 cut(s)	216, 396
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	216, 396
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	216, 396
BspCNI	CTCAG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	211
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	176
Bst4CI	ACNGT	5 cut(s)	100, 131, 199, 204, 329
Bst6I	CTCTTC	2 cut(s)	158, 354
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	345, 416
BstDEI	CTNAG	3 cut(s)	65, 362, 504
BstF5I	GGATG	2 cut(s)	89, 135
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	271, 301, 476
BsuRI	GGCC	2 cut(s)	216, 396
BtsCI	GGATG	2 cut(s)	89, 135
BtsI	GCAGTG	2 cut(s)	345, 409
BtsIMutI	CAGTG	2 cut(s)	345, 409
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	345, 416
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	31, 200, 447
CviJI	RGCY	5 cut(s)	6, 42, 216, 396, 418
CviKI_1	RGCY	5 cut(s)	6, 42, 216, 396, 418
CviQI	GTAC	3 cut(s)	31, 200, 447
DdeI	CTNAG	3 cut(s)	65, 362, 504
Eam1104I	CTCTTC	2 cut(s)	158, 354
EarI	CTCTTC	2 cut(s)	158, 354
Eco130I	CCWWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaiI	YATR	3 cut(s)	95, 245, 393
Fnu4HI	GCNGC	3 cut(s)	260, 315, 490
FokI	GGATG	2 cut(s)	76, 122
Fsp4HI	GCNGC	3 cut(s)	260, 315, 490
FspBI	CTAG	2 cut(s)	438, 495
GluI	GCNGC	3 cut(s)	260, 315, 490
HaeIII	GGCC	2 cut(s)	216, 396
HapII	CCGG	1 cut(s)	318
HinfI	GANTC	2 cut(s)	69, 141
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	280, 367
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	140, 295
Hpy188III	TCNNGA	3 cut(s)	10, 178, 495
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	135
HpyCH4III	ACNGT	5 cut(s)	100, 131, 199, 204, 329
HpyCH4V	TGCA	2 cut(s)	338, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	65, 362, 504
LguI	GCTCTTC	1 cut(s)	354
LpnPI	CCDG	4 cut(s)	248, 331, 349, 458
Lsp1109I	GCAGC	3 cut(s)	271, 301, 476
LweI	GCATC	2 cut(s)	144, 325
MaeI	CTAG	2 cut(s)	438, 495
MaeIII	GTNAC	3 cut(s)	149, 178, 239
MboII	GAAGA	3 cut(s)	95, 175, 341
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	36, 108, 246, 321
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	3 cut(s)	159, 185, 491
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	178, 239
NspV	TTCGAA	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	69
PflFI	GACNNNGTC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	261, 316, 491
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	184
RsaI	GTAC	3 cut(s)	32, 201, 448
RsaNI	GTAC	3 cut(s)	31, 200, 447
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	260, 315, 490
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	6 cut(s)	170, 233, 267, 368, 420, 470
SfaNI	GCATC	2 cut(s)	144, 325
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	36, 108, 246, 321
SspMI	CTAG	2 cut(s)	438, 495
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	5 cut(s)	100, 131, 199, 204, 329
TaqI	TCGA	4 cut(s)	11, 48, 86, 106
TasI	AATT	4 cut(s)	36, 108, 246, 321
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	345, 416
TseFI	GTSAC	2 cut(s)	178, 239
TseI	GCWGC	3 cut(s)	259, 314, 489
Tsp45I	GTSAC	2 cut(s)	178, 239
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	345, 416
Tth111I	GACNNNGTC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	494
XspI	CTAG	2 cut(s)	438, 495
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.