Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001039

Physical Location & Seq

Genomic Coordinates Forward (+)

2008714 .. 2009346

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTTGGAAGGAGTGGTGGATGCTGCTGTAACGTTGTATGTTGCTTCTGCATATTCTACAACACCATCTTATGCTCCGTCCTTGCCCTCCTCATATTCGTCTTCATCTTCAATCCTCAAGAGCCGAAATTCACTGTCACTGATGCCTCTCTTACCCGATTCAATTTCACCAACGATAACAACACCCTCCACTACAACCTTGCGCTCAACATCACCATCCGAAACCCTAACAGAAGGGTTGGCATATACTACCGCCGCATCCAGGTCATAGCCAACTATAGAAAAAAGCGGTTTGCTATGGTGACATTACCTTCGGCGCCATTTTACCAAGGCCATAAGAACACAACAATTTTAAATCATGTACTAGTTGAAGGGCAACAGTTGGTGGTGTTTGGGGAACGTGACCTTTCCCAGTTTAACTCAGAGGCTGCTGCCGGGCTTTACAGTATTGATTTGAAGCTTGCTCTTCGGGTAAGAGCCAGGTACGGAAAGTTCAAGTCACCCAATTACAAGCCATATTACAAGATTGACTGCTCGCTGAAGGTTCCTTTCAGTTCAAATGAAACATCTCCAAGTGCATTCGAGGCTACACAGTGCTGGAATGTTTATCTCTTTTCAAATCCCGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

211

Amino Acids

24.0

Weight (kDa)

9.33

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	71 - 164	2.5e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05761 FvH4_6g11861 FvH4_6g18540 FvH4_6g18550 FvH4_6g18570
malus_domestica	MD12G1035300.v1.1 MD12G1035400.v1.1 MD14G1021700.v1.1 MD14G1022000.v1.1 MD14G1022100.v1.1
prunus_persica	Prupe.7G111300_v2.0.a1 Prupe.7G111400_v2.0.a1 Prupe.7G111500_v2.0.a1 Prupe.7G111600_v2.0.a1 Prupe.7G111900_v2.0.a1 Prupe.7G112000_v2.0.a1
pyrus_communis	pycom12g02300 pycom12g02310 pycom14g02110
rosa_chinensis	RchiOBHm_Chr3g0463611 RchiOBHm_Chr3g0473091 RchiOBHm_Chr3g0473101 RchiOBHm_Chr3g0473121 RchiOBHm_Chr6g0258251
rosa_laevigata	RLG00000024026 RLG00000024028 RLG00000024029
rosa_multiflora	Rmu_sc0004230.1_g000014 Rmu_sc0012012.1_g000003 Rmu_sc0016115.1_g000004 Rmu_sc0016115.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408300 Rroxscaffold_6G00408310 Rroxscaffold_6G00408320
rosa_rugosa	Rorug02G0403800 Rorug03G0066500 Rorug03G0131500.1 Rorug05G0165800 Rorug05G0579600
rosa_samantha	Rh3AG123400 Rh3AG182900 Rh3AG183000 Rh3AG183200 Rh3BG209500 Rh3CG130100 Rh3CG206400 Rh3CG206500 Rh3CG206700 Rh3DG206500 Rh6BG088600 Rh6CG084600 Rh7DG001800
rosa_wichuraiana	Rw0G008050 Rw0G008060 Rw0G008080 Rw0G014680 Rw0G014690 Rw0G014710 Rw3G010440 Rw3G016010 Rw6G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	3 cut(s)	253, 256, 289
AclI	AACGTT	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	363, 485
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	7 cut(s)	112, 163, 371, 457, 496, 558, 618
AhlI	ACTAGT	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	261, 479
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	24, 428, 431
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspLEI	GCGC	2 cut(s)	205, 319
AsuC2I	CCSGG	2 cut(s)	436, 624
AsuHPI	GGTGA	4 cut(s)	160, 205, 313, 492
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	11, 415, 418
BccI	CCATC	2 cut(s)	74, 224
BciT130I	CCWGG	2 cut(s)	263, 481
BcnI	CCSGG	2 cut(s)	436, 624
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	4 cut(s)	25, 256, 429, 432
BlsI	GCNGC	4 cut(s)	26, 257, 430, 433
Bme1390I	CCNGG	4 cut(s)	263, 436, 481, 624
BmiI	GGNNCC	2 cut(s)	318, 546
BmrFI	CCNGG	4 cut(s)	263, 436, 481, 624
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	11, 133, 267
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	436, 624
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	263, 481
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	26, 216, 258
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	11, 415, 418
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	435, 624
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	333
BspACI	CCGC	3 cut(s)	253, 256, 289
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	434
BspLI	GGNNCC	2 cut(s)	318, 546
BspQI	GCTCTTC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	263, 481
Bst4CI	ACNGT	4 cut(s)	136, 381, 446, 594
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	462, 536
BstDEI	CTNAG	1 cut(s)	421
BstF5I	GGATG	3 cut(s)	26, 216, 258
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	205, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	263, 481
BstSCI	CCNGG	4 cut(s)	261, 434, 479, 622
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	11, 415, 418
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	26, 216, 258
BtsIMutI	CAGTG	3 cut(s)	132, 138, 599
Cac8I	GCNNGC	2 cut(s)	462, 536
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	2 cut(s)	205, 319
Csp6I	GTAC	2 cut(s)	362, 484
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	124, 272, 333, 428, 439, 460, 479, 514, 587
CviKI_1	RGCY	9 cut(s)	124, 272, 333, 428, 439, 460, 479, 514, 587
CviQI	GTAC	2 cut(s)	362, 484
DdeI	CTNAG	1 cut(s)	421
DinI	GGCGCC	1 cut(s)	318
DraI	TTTAAA	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	261, 479
EcoT14I	CCWWGG	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	362
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	25, 256, 429, 432
FokI	GGATG	3 cut(s)	33, 203, 245
Fsp4HI	GCNGC	4 cut(s)	25, 256, 429, 432
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	2 cut(s)	204, 318
GluI	GCNGC	4 cut(s)	25, 256, 429, 432
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	435, 624
HhaI	GCGC	2 cut(s)	205, 319
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	2 cut(s)	203, 317
HinP1I	GCGC	2 cut(s)	203, 317
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	435, 624
HphI	GGTGA	4 cut(s)	160, 205, 313, 492
Hpy188I	TCNGA	2 cut(s)	221, 424
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	5 cut(s)	3, 228, 321, 365, 535
HpyCH4III	ACNGT	4 cut(s)	136, 381, 446, 594
HpyCH4IV	ACGT	2 cut(s)	33, 400
HpyCH4V	TGCA	2 cut(s)	51, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	2 cut(s)	33, 400
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	2 cut(s)	203, 317
KasI	GGCGCC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	248, 275, 425, 448, 466, 493, 583
Lsp1109I	GCAGC	3 cut(s)	11, 415, 418
LweI	GCATC	3 cut(s)	11, 133, 267
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	2 cut(s)	33, 400
MaeIII	GTNAC	5 cut(s)	29, 136, 301, 401, 498
MboII	GAAGA	3 cut(s)	94, 100, 458
MluCI	AATT	4 cut(s)	128, 163, 348, 505
Mly113I	GGCGCC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	98, 101, 126, 157, 197, 418, 577
MseI	TTAA	2 cut(s)	353, 417
MspI	CCGG	2 cut(s)	435, 624
MspR9I	CCNGG	4 cut(s)	263, 436, 481, 624
Mva1269I	GAATGC	1 cut(s)	578
MvaI	CCWGG	2 cut(s)	263, 481
MwoI	GCNNNNNNNGC	1 cut(s)	584
NarI	GGCGCC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	436, 624
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	318, 546
NmuCI	GTSAC	4 cut(s)	136, 301, 401, 498
PciSI	GCTCTTC	1 cut(s)	471
PctI	GAATGC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	26, 257, 430, 433
PluTI	GGCGCC	1 cut(s)	320
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	261, 479
PspGI	CCWGG	2 cut(s)	261, 479
PspN4I	GGNNCC	2 cut(s)	318, 546
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	363, 485
RsaNI	GTAC	2 cut(s)	362, 484
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	353, 417
SatI	GCNGC	4 cut(s)	25, 256, 429, 432
ScrFI	CCNGG	4 cut(s)	263, 436, 481, 624
SetI	ASST	9 cut(s)	36, 201, 267, 313, 403, 408, 462, 485, 546
SfaNI	GCATC	3 cut(s)	11, 133, 267
SfcI	CTRYAG	1 cut(s)	277
SfoI	GGCGCC	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	364
Sse9I	AATT	4 cut(s)	128, 163, 348, 505
SsiI	CCGC	3 cut(s)	253, 256, 289
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	4 cut(s)	261, 434, 479, 622
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	136, 381, 446, 594
TaiI	ACGT	2 cut(s)	36, 403
TaqI	TCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	128, 163, 348, 505
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	353, 417
Tru9I	TTAA	2 cut(s)	353, 417
TscAI	CASTG	3 cut(s)	139, 145, 599
TseFI	GTSAC	4 cut(s)	136, 301, 401, 498
TseI	GCWGC	3 cut(s)	24, 428, 431
Tsp45I	GTSAC	4 cut(s)	136, 301, 401, 498
TspDTI	ATGAA	2 cut(s)	94, 576
TspGWI	ACGGA	2 cut(s)	67, 501
TspRI	CASTG	3 cut(s)	139, 145, 599
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.