Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

6299669 .. 6303149

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCGAAGAACACCCCCACAGAGACCACCGGCGAGTCTCGATTCTTGGGAACCATCTCCGCCTCATCGATTCGAAACCTCCACCCCAGATCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCGCACCAAATGCCGAAAAAGCCCCTTTCACCTAACCCTTACATCCAAGTTGACCACGATTCAGCTTTCGCTACCAAGCCGCTACCAGTACCGTTCGATTTGCCTAAATCTCCGACCTCTGCCGCTCAGAACATTCCGGTGAAGGTTTGTTCCGTACTTCATTCAGCCTGGATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGCAAATGCTTGCATTGCAGCAGTCACTAGTTTCTCAGACCAATCGACAGCAATCAACTCAGGATCCAACTCAGACTGGTGGTGCTACAGGAACCCCCAATAATGGTGCTGGACTGGAGATGCTGATGAACATGTTTGGTGGTCTTGGAGCTGGCAGCTTGGCTGCACCAGTCAGCAATGTACCACCGGAGGAACGTTATGCAACTCAGCTGTCACAACTAATCAAGATTCGTTATTTGAACTGCTTGTATTTTTCTGTATATCAGGATGCTGGACTTTTTTTACCTATACATGGTTCTGCTCCTGTACAGATCAAAGTTTCAAACTTTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGAACACCTGTTATCCAGAACGTTAGAGTCAACTAGCTGTCAGTCTGCTGATCAGGTGGAAGCAACATTAGTTAACAAAGGAGTCAGAGTAATATCCGAAGAATCAACCTGTTGGTGTTGTGCTTATGCGGGCGTGGCTGGCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

290

Amino Acids

31.53

Weight (kDa)

6.16

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	5 cut(s)	59, 137, 215, 258, 851
AclI	AACGTT	2 cut(s)	553, 743
AclWI	GGATC	3 cut(s)	83, 416, 429
AcoI	YGGCCR	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	4 cut(s)	225, 291, 540, 666
AfiI	CCNNNNNNNGG	2 cut(s)	461, 650
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	334, 350, 598, 681
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	6 cut(s)	200, 509, 516, 568, 722, 759
AluI	AGCT	6 cut(s)	200, 509, 516, 568, 722, 759
Alw26I	GTCTC	2 cut(s)	16, 41
AlwI	GGATC	3 cut(s)	83, 416, 429
AoxI	GGCC	1 cut(s)	862
ApeKI	GCWGC	3 cut(s)	376, 513, 521
AsuHPI	GGTGA	2 cut(s)	156, 286
AsuII	TTCGAA	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	388, 508, 525
BccI	CCATC	2 cut(s)	61, 100
BciT130I	CCWGG	1 cut(s)	304
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	16, 41
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	2 cut(s)	386, 756
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	6 cut(s)	137, 215, 258, 377, 514, 522
BlsI	GCNGC	6 cut(s)	138, 216, 259, 378, 515, 523
Bme1390I	CCNGG	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	51, 423, 451
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	468, 616
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	271, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 650
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	4 cut(s)	221, 439, 477, 527
Bse3DI	GCAATG	2 cut(s)	371, 541
BseBI	CCWGG	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	67
BseGI	GGATG	3 cut(s)	177, 312, 631
BseLI	CCNNNNNNNGG	2 cut(s)	461, 650
BseMI	GCAATG	2 cut(s)	371, 541
BseMII	CTCAG	5 cut(s)	275, 407, 431, 443, 578
BseNI	ACTGG	4 cut(s)	221, 439, 477, 527
BseXI	GCAGC	3 cut(s)	388, 508, 525
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	864
BshVI	ATCGAT	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	29, 272, 545
BslI	CCNNNNNNNGG	2 cut(s)	461, 650
BsmAI	GTCTC	2 cut(s)	16, 41
BsnI	GGCC	1 cut(s)	864
Bso31I	GGTCTC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	88, 421, 669, 772
BspACI	CCGC	5 cut(s)	59, 137, 215, 258, 851
BspANI	GGCC	1 cut(s)	864
BspCNI	CTCAG	5 cut(s)	274, 406, 430, 442, 577
BspDI	ATCGAT	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	51, 423, 451
BspPI	GGATC	3 cut(s)	83, 416, 429
BspT104I	TTCGAA	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	371, 541
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	221, 439, 477, 527
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	4 cut(s)	88, 421, 669, 772
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	369, 511, 853, 862
BstDEI	CTNAG	5 cut(s)	261, 393, 417, 429, 564
BstF5I	GGATG	3 cut(s)	177, 312, 631
BstKTI	GATC	4 cut(s)	91, 424, 672, 775
BstMAI	GTCTC	2 cut(s)	16, 41
BstMBI	GATC	4 cut(s)	88, 421, 669, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 154, 373, 857, 861
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	3 cut(s)	388, 508, 525
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	88, 421
BstYI	RGATCY	2 cut(s)	88, 421
Bsu15I	ATCGAT	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	864
BsuTUI	ATCGAT	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	177, 312, 631
Cac8I	GCNNGC	4 cut(s)	369, 511, 853, 862
Cfr10I	RCCGGY	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	224, 290, 539, 665
CviAII	CATG	3 cut(s)	320, 490, 650
CviQI	GTAC	4 cut(s)	224, 290, 539, 665
DdeI	CTNAG	5 cut(s)	261, 393, 417, 429, 564
DpnI	GATC	4 cut(s)	90, 423, 671, 774
DpnII	GATC	4 cut(s)	88, 421, 669, 772
EaeI	YGGCCR	1 cut(s)	862
EciI	GGCGGA	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	323, 493, 653
FaiI	YATR	8 cut(s)	321, 491, 558, 619, 647, 651, 707, 849
FatI	CATG	3 cut(s)	319, 489, 649
FauI	CCCGC	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	6 cut(s)	137, 215, 258, 377, 514, 522
FokI	GGATG	3 cut(s)	164, 319, 638
Fsp4HI	GCNGC	6 cut(s)	137, 215, 258, 377, 514, 522
FspBI	CTAG	2 cut(s)	386, 756
GluI	GCNGC	6 cut(s)	137, 215, 258, 377, 514, 522
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	864
HapII	CCGG	3 cut(s)	29, 272, 545
Hin1II	CATG	3 cut(s)	323, 493, 653
HincII	GTYRAC	3 cut(s)	187, 753, 796
HindII	GTYRAC	3 cut(s)	187, 753, 796
HinfI	GANTC	8 cut(s)	34, 41, 69, 194, 586, 749, 804, 824
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	3 cut(s)	29, 272, 545
HphI	GGTGA	2 cut(s)	156, 286
Hpy166II	GTNNAC	3 cut(s)	187, 753, 796
Hpy188I	TCNGA	6 cut(s)	249, 264, 396, 432, 809, 820
Hpy188III	TCNNGA	5 cut(s)	38, 419, 583, 623, 738
Hpy8I	GTNNAC	3 cut(s)	187, 753, 796
HpyAV	CCTTC	2 cut(s)	126, 271
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	2 cut(s)	553, 743
HpyCH4V	TGCA	7 cut(s)	319, 371, 376, 524, 560, 689, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 154, 373, 857, 861
HpyF3I	CTNAG	5 cut(s)	261, 393, 417, 429, 564
HpySE526I	ACGT	2 cut(s)	553, 743
Hsp92II	CATG	3 cut(s)	323, 493, 653
Ksp22I	TGATCA	1 cut(s)	772
KspAI	GTTAAC	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	88, 421, 669, 772
LmnI	GCTCC	2 cut(s)	506, 664
Lsp1109I	GCAGC	3 cut(s)	388, 508, 525
LweI	GCATC	2 cut(s)	468, 616
MaeI	CTAG	2 cut(s)	386, 756
MaeII	ACGT	2 cut(s)	553, 743
MaeIII	GTNAC	2 cut(s)	381, 570
MalI	GATC	4 cut(s)	90, 423, 671, 774
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	4 cut(s)	88, 421, 669, 772
MboII	GAAGA	4 cut(s)	18, 111, 338, 833
MflI	RGATCY	2 cut(s)	88, 421
MlsI	TGGCCA	1 cut(s)	864
MluCI	AATT	2 cut(s)	131, 345
MluNI	TGGCCA	1 cut(s)	864
MlyI	GAGTC	3 cut(s)	43, 758, 813
MmeI	TCCRAC	3 cut(s)	272, 449, 696
MnlI	CCTC	4 cut(s)	72, 88, 262, 541
Mox20I	TGGCCA	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	864
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	3 cut(s)	29, 272, 545
MspR9I	CCNGG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	5 cut(s)	145, 154, 373, 857, 861
NdeII	GATC	4 cut(s)	88, 421, 669, 772
NlaIII	CATG	3 cut(s)	323, 493, 653
NlaIV	GGNNCC	3 cut(s)	51, 423, 451
NmuCI	GTSAC	2 cut(s)	381, 570
NspI	RCATGY	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	489
PfeI	GAWTC	5 cut(s)	41, 69, 194, 586, 824
PkrI	GCNGC	6 cut(s)	138, 216, 259, 378, 515, 523
PleI	GAGTC	3 cut(s)	42, 757, 812
PpsI	GAGTC	3 cut(s)	42, 757, 812
PscI	ACATGT	1 cut(s)	489
Psp1406I	AACGTT	2 cut(s)	553, 743
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	51, 423, 451
PsuI	RGATCY	2 cut(s)	88, 421
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	4 cut(s)	225, 291, 540, 666
RsaNI	GTAC	4 cut(s)	224, 290, 539, 665
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	6 cut(s)	137, 215, 258, 377, 514, 522
Sau3AI	GATC	4 cut(s)	88, 421, 669, 772
SchI	GAGTC	3 cut(s)	43, 758, 813
ScrFI	CCNGG	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	468, 616
SfcI	CTRYAG	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	2 cut(s)	131, 345
SsiI	CCGC	5 cut(s)	59, 137, 215, 258, 851
SspMI	CTAG	2 cut(s)	386, 756
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	2 cut(s)	556, 746
TaqI	TCGA	5 cut(s)	39, 67, 72, 231, 403
TasI	AATT	2 cut(s)	131, 345
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	3 cut(s)	139, 217, 260
TfiI	GAWTC	5 cut(s)	41, 69, 194, 586, 824
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	381, 570
TseI	GCWGC	3 cut(s)	376, 513, 521
Tsp45I	GTSAC	2 cut(s)	381, 570
TspDTI	ATGAA	3 cut(s)	284, 339, 500
TspGWI	ACGGA	3 cut(s)	122, 277, 725
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	2 cut(s)	386, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.