Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

3259142 .. 3261218

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTCCACTATTCTGGCGTGCAAGGTCAATCAGTTGGATCTACAAGCAAATAGTAATTTGGTTCTGACAGCTAGGCGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGAATTCTGCCAGGAAAACAAAGTTGGCCCAATTGGTTTATCCATGACATGCGAATGCAACCAAGCTTCAGATGCAAAGGATGTAGGAAATGGAGCAGTTAGCAAGTGTTCAGGGCATGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

82

Amino Acids

8.73

Weight (kDa)

5.63

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	25 - 52	1e-07	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	71, 188
AluI	AGCT	2 cut(s)	71, 188
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	37, 120
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	45
BssMI	GATC	2 cut(s)	37, 120
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	19, 240
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	40, 123
BstMBI	GATC	2 cut(s)	37, 120
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 194
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	174, 242
BstSCI	CCNGG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	19, 240
Cfr13I	GGNCC	1 cut(s)	149
CviAII	CATG	4 cut(s)	109, 166, 171, 239
CviJI	RGCY	3 cut(s)	71, 150, 188
CviKI_1	RGCY	3 cut(s)	71, 150, 188
DpnI	GATC	2 cut(s)	39, 122
DpnII	GATC	2 cut(s)	37, 120
Eco32I	GATATC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	90
FaeI	CATG	4 cut(s)	112, 169, 174, 242
FaiI	YATR	4 cut(s)	110, 167, 172, 240
FatI	CATG	4 cut(s)	108, 165, 170, 238
FokI	GGATG	1 cut(s)	215
FspBI	CTAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	112, 169, 174, 242
HindIII	AAGCTT	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	6, 103
Hpy188I	TCNGA	3 cut(s)	66, 94, 193
Hpy8I	GTNNAC	2 cut(s)	6, 103
HpyCH4V	TGCA	4 cut(s)	21, 85, 180, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 194
Hsp92II	CATG	4 cut(s)	112, 169, 174, 242
Kzo9I	GATC	2 cut(s)	37, 120
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	3 cut(s)	119, 146, 219
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	72
MalI	GATC	2 cut(s)	39, 122
MboI	GATC	2 cut(s)	37, 120
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	3 cut(s)	55, 125, 153
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	82, 194
NdeII	GATC	2 cut(s)	37, 120
NlaIII	CATG	4 cut(s)	112, 169, 174, 242
NspI	RCATGY	2 cut(s)	174, 242
PaeI	GCATGC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	37, 120
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	4 cut(s)	27, 73, 99, 190
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	175
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	55, 125, 153
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	55, 125, 153
TspDTI	ATGAA	1 cut(s)	125
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	174, 242
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.