Rh6AG167100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012702
Physical Location & Seq
Forward (+)
26697840 .. 26725915
28076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG167100.1

Sequence Viewer

Length: 567 bp
ATGGACGGCCTCTGGCTCTCCCAACGCTACCACAACCACTCCGAGTTTATGAAGACAGCCACCATGCCAGCTCAACAATTTGTCCCCCAAAAATACCGAGCCCCCTCAGCTCGGCAAGAAGCAGTTCATCATCTAACCCTTTCAAAGCAGACAAGTATATTGGGGAGCCCTTGGATTGCCGTCATCGCAGCTGTTCCTATCAATCTCTGTTACTGTTTTTGTTCGCGATGTAGTTCTAACAATCTCCAAATGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGCTGGTACGGATAAATCAAGAAATTGGTGGTGTGTTTTATGATTCTCTTTCACTGAATAAAGTAACCTGGCTCCTAAGGTCAATGCATGACCTCTCCACCCGTAAAGCTGCCATGTGTCTTTCCTCTGGCTTTAGAGAGAGAGATTTTTCAATGGATTCCCATGGCCAGATTTTAATAACACCACCCTCAAAACCTGACCACATATCACCTGGATCAGAGAAACATGATATCAGAGGTATGCTAACATTGGCAACGGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

8.97

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 226
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 111, 296
AgsI TTSAA 3 cut(s) 144, 259, 453
AjnI CCWGG 2 cut(s) 368, 511
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 5 cut(s) 71, 110, 191, 304, 410
AluI AGCT 5 cut(s) 71, 110, 191, 304, 410
AlwI GGATC 1 cut(s) 523
AoxI GGCC 2 cut(s) 7, 466
ApeKI GCWGC 3 cut(s) 188, 410, 560
ApoI RAATTY 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 501
AxyI CCTNAGG 1 cut(s) 377
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 2 cut(s) 103, 170
BbsI GAAGAC 1 cut(s) 59
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 3 cut(s) 200, 397, 547
BceAI ACGGC 2 cut(s) 22, 164
BciT130I CCWGG 2 cut(s) 370, 513
BfaI CTAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 189, 411, 561
BlsI GCNGC 3 cut(s) 190, 412, 562
Bme1390I CCNGG 2 cut(s) 370, 513
BmiI GGNNCC 3 cut(s) 167, 288, 374
BmrFI CCNGG 2 cut(s) 370, 513
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 170, 463
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 296
Bse21I CCTNAGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 370, 513
BseDI CCNNGG 2 cut(s) 170, 463
BseLI CCNNNNNNNGG 2 cut(s) 111, 296
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 200, 397, 547
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 9, 468
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 111, 296
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 2 cut(s) 9, 468
Bsp1286I GDGCHC 2 cut(s) 103, 170
Bsp143I GATC 2 cut(s) 262, 515
Bsp19I CCATGG 1 cut(s) 463
Bsp68I TCGCGA 1 cut(s) 226
BspANI GGCC 2 cut(s) 9, 468
BspCNI CTCAG 1 cut(s) 119
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 167, 288, 374
BspPI GGATC 1 cut(s) 523
BssECI CCNNGG 2 cut(s) 170, 463
BssMI GATC 2 cut(s) 262, 515
BssT1I CCWWGG 2 cut(s) 170, 463
Bst2UI CCWGG 2 cut(s) 370, 513
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 106, 377
BstDSI CCRYGG 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 265, 518
BstMBI GATC 2 cut(s) 262, 515
BstMWI GCNNNNNNNGC 3 cut(s) 107, 185, 560
BstNI CCWGG 2 cut(s) 370, 513
BstSCI CCNGG 2 cut(s) 368, 511
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 200, 397, 547
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
Bsu36I CCTNAGG 1 cut(s) 377
BsuRI GGCC 2 cut(s) 9, 468
BtgI CCRYGG 1 cut(s) 463
BtgZI GCGATG 2 cut(s) 169, 241
BtsIMutI CAGTG 1 cut(s) 353
BtuMI TCGCGA 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 308
CviAII CATG 5 cut(s) 64, 389, 415, 464, 527
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 106, 377
DpnI GATC 2 cut(s) 264, 517
DpnII GATC 2 cut(s) 262, 515
EaeI YGGCCR 1 cut(s) 466
Eco130I CCWWGG 2 cut(s) 170, 463
Eco24I GRGCYC 2 cut(s) 103, 170
Eco32I GATATC 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 368, 511
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 170, 463
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 103, 170
ErhI CCWWGG 2 cut(s) 170, 463
FaeI CATG 5 cut(s) 67, 392, 418, 467, 530
FaqI GGGAC 1 cut(s) 68
FatI CATG 5 cut(s) 63, 388, 414, 463, 526
Fnu4HI GCNGC 3 cut(s) 189, 411, 561
FriOI GRGCYC 2 cut(s) 103, 170
Fsp4HI GCNGC 3 cut(s) 189, 411, 561
FspBI CTAG 1 cut(s) 296
GluI GCNGC 3 cut(s) 189, 411, 561
HaeIII GGCC 2 cut(s) 9, 468
Hin1II CATG 5 cut(s) 67, 392, 418, 467, 530
HinfI GANTC 2 cut(s) 344, 458
HphI GGTGA 1 cut(s) 501
Hpy188I TCNGA 3 cut(s) 43, 520, 536
Hpy188III TCNNGA 3 cut(s) 225, 290, 320
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 388, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 185, 560
HpyF3I CTNAG 2 cut(s) 106, 377
Hsp92II CATG 5 cut(s) 67, 392, 418, 467, 530
Kzo9I GATC 2 cut(s) 262, 515
LmnI GCTCC 3 cut(s) 165, 292, 378
Lsp1109I GCAGC 3 cut(s) 200, 397, 547
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 209, 364
MalI GATC 2 cut(s) 264, 517
MboI GATC 2 cut(s) 262, 515
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 103, 170
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 3 cut(s) 77, 253, 324
MluNI TGGCCA 1 cut(s) 468
MnlI CCTC 7 cut(s) 20, 115, 269, 404, 436, 499, 530
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 468
MseI TTAA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 370, 513
MvaI CCWGG 2 cut(s) 370, 513
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 107, 185, 560
NcoI CCATGG 1 cut(s) 463
NdeII GATC 2 cut(s) 262, 515
NlaIII CATG 5 cut(s) 67, 392, 418, 467, 530
NlaIV GGNNCC 3 cut(s) 167, 288, 374
NmeAIII GCCGAG 1 cut(s) 91
NruI TCGCGA 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 344, 458
PkrI GCNGC 3 cut(s) 190, 412, 562
Psp6I CCWGG 2 cut(s) 368, 511
PspGI CCWGG 2 cut(s) 368, 511
PspN4I GGNNCC 3 cut(s) 167, 288, 374
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 191
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 3 cut(s) 189, 411, 561
Sau3AI GATC 2 cut(s) 262, 515
ScrFI CCNGG 2 cut(s) 370, 513
SduI GDGCHC 2 cut(s) 103, 170
Sse9I AATT 3 cut(s) 77, 253, 324
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 368, 511
StyI CCWWGG 2 cut(s) 170, 463
TaaI ACNGT 1 cut(s) 215
TasI AATT 3 cut(s) 77, 253, 324
TfiI GAWTC 2 cut(s) 344, 458
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 1 cut(s) 360
TseI GCWGC 3 cut(s) 188, 410, 560
TspDTI ATGAA 3 cut(s) 65, 116, 266
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.