Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

6295104 .. 6295975

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTAAAGAGCAGAAAACTGCTATGGATGTTGCAGCTGAAAACTTCAACAGCCATTCAAAGACTCATAGCATTATCCTTCATTTTCGACATTCTGACAGAGATCCCTTGACTGCAGCTTCTTCTGCTCAAGAGTTGATAAAAGAAAATAAGGTAAATGTGCTAATTGGCATGGAGACTTGGAATGAAGCAGCTCTAGTGGCTGATGTGGGGAACCAAGCAAAAGTTCCGGTGATTTCATTTGCAACACCTGCTATAACCCCACCTCTAGTGCAACGTCATTGGCCATTTTTGATACGAGTGGCAAGCGATGGTGCTGCTCAGATGAAATGCATTGCAGATATAGTTTCTGCATACAATTGGAAAAGGGTTATTGCAATATATGAGGATGATGGTTCTGGTGTTGACGCTGGGATGCTAGCTCTTCTATTTGAGGCTCTCCAAGATGTTGGTTCAAAGATTGATCATCATTTGGTTCTCCCACGGGTTTCTTCTATGTCTAATCCTAATTTGGGTGAACTAGAAGAGATGTTGAAGCTTCCCAGCTTTCAATCTCGGGTGTTCATTGTGCTTCAGTCATCTTTACCAACGGTGACTAATCTGTTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCACAGAGAGTATTACCAGTTTACTTGACGCTCAAGTCAATCATGATATGGAAGGTACTCTGGGGATCAAGACCTACTATGCCAATAATACTAGTTCCTATGGAAGGTACTCAAGGCTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

6.07

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	2 - 247	2.7e-10	Periplasmic binding protein
ANF_receptor	PF01094	6 - 249	8.6e-34	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
AasI	GACNNNNNNGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	259
AclWI	GGATC	2 cut(s)	98, 728
AcoI	YGGCCR	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	2 cut(s)	712, 764
AfiI	CCNNNNNNNGG	2 cut(s)	512, 759
AgsI	TTSAA	5 cut(s)	49, 60, 456, 535, 551
AhlI	ACTAGT	1 cut(s)	746
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	38, 119, 194, 422, 538, 546
AluI	AGCT	6 cut(s)	38, 119, 194, 422, 538, 546
Alw26I	GTCTC	2 cut(s)	170, 633
AlwI	GGATC	2 cut(s)	98, 728
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	4 cut(s)	35, 116, 191, 317
AsuHPI	GGTGA	3 cut(s)	244, 527, 604
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	286
BbvI	GCAGC	4 cut(s)	47, 128, 203, 304
BccI	CCATC	3 cut(s)	305, 386, 616
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	170, 633
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	5 cut(s)	197, 269, 419, 521, 747
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	36, 117, 192, 318
BlsI	GCNGC	4 cut(s)	37, 118, 193, 319
BmeT110I	CYCGRG	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	405
BmtI	GCTAGC	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	114, 672, 751
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 759
Bse1I	ACTGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	34, 394, 420
BseLI	CCNNNNNNNGG	2 cut(s)	512, 759
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	672
BseXI	GCAGC	4 cut(s)	47, 128, 203, 304
BseYI	CCCAGC	2 cut(s)	410, 542
BshFI	GGCC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	512, 759
BsmAI	GTCTC	2 cut(s)	170, 633
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	103, 463, 720
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	98, 728
BspQI	GCTCTTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	672
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	3 cut(s)	103, 463, 720
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	3 cut(s)	429, 519, 631
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	307, 420
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	482
BstENI	CCTNNNNNAGG	1 cut(s)	757
BstF5I	GGATG	3 cut(s)	34, 394, 420
BstKTI	GATC	3 cut(s)	106, 466, 723
BstMAI	GTCTC	2 cut(s)	170, 633
BstMBI	GATC	3 cut(s)	103, 463, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 200, 251
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	47, 128, 203, 304
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	482
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	34, 394, 420
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	307, 420
CciI	TCATGA	1 cut(s)	697
CseI	GACGC	2 cut(s)	416, 692
Csp6I	GTAC	2 cut(s)	711, 763
CviAII	CATG	2 cut(s)	172, 698
CviQI	GTAC	2 cut(s)	711, 763
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	105, 465, 722
DpnII	GATC	3 cut(s)	103, 463, 720
DrdI	GACNNNNNNGTC	1 cut(s)	689
DseDI	GACNNNNNNGTC	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	3 cut(s)	429, 519, 631
EarI	CTCTTC	3 cut(s)	429, 519, 631
Eco57I	CTGAAG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	555
EcoNI	CCTNNNNNAGG	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	2 cut(s)	175, 701
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	2 cut(s)	171, 697
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	36, 117, 192, 318
FokI	GGATG	3 cut(s)	41, 401, 427
Fsp4HI	GCNGC	4 cut(s)	36, 117, 192, 318
FspBI	CTAG	5 cut(s)	197, 269, 419, 521, 747
GluI	GCNGC	4 cut(s)	36, 117, 192, 318
GsaI	CCCAGC	2 cut(s)	414, 546
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	2 cut(s)	416, 692
Hin1II	CATG	2 cut(s)	175, 701
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	64, 641
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	244, 527, 604
Hpy166II	GTNNAC	3 cut(s)	406, 518, 677
Hpy188I	TCNGA	2 cut(s)	97, 324
Hpy188III	TCNNGA	3 cut(s)	131, 698, 724
Hpy8I	GTNNAC	3 cut(s)	406, 518, 677
HpyAV	CCTTC	3 cut(s)	89, 701, 753
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	8 cut(s)	35, 116, 245, 274, 333, 338, 353, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 200, 251
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	175, 701
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	103, 463, 720
LguI	GCTCTTC	1 cut(s)	429
LpnPI	CCDG	8 cut(s)	243, 264, 384, 396, 556, 592, 685, 701
Lsp1109I	GCAGC	4 cut(s)	47, 128, 203, 304
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	5 cut(s)	197, 269, 419, 521, 747
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	105, 465, 722
MboI	GATC	3 cut(s)	103, 463, 720
MboII	GAAGA	6 cut(s)	114, 416, 483, 536, 631, 648
MfeI	CAATTG	1 cut(s)	358
MflI	RGATCY	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	3 cut(s)	165, 358, 508
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	58, 635
MnlI	CCTC	3 cut(s)	276, 379, 427
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	286
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	125, 200, 251
NdeII	GATC	3 cut(s)	103, 463, 720
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	175, 701
NlaIV	GGNNCC	1 cut(s)	215
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	335
PagI	TCATGA	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	37, 118, 193, 319
PleI	GAGTC	2 cut(s)	58, 635
PpsI	GAGTC	2 cut(s)	58, 635
PspFI	CCCAGC	2 cut(s)	410, 542
PspN4I	GGNNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	712, 764
RsaNI	GTAC	2 cut(s)	711, 763
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	4 cut(s)	36, 117, 192, 318
Sau3AI	GATC	3 cut(s)	103, 463, 720
SchI	GAGTC	2 cut(s)	58, 635
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	114
SmlI	CTYRAG	4 cut(s)	129, 687, 766, 773
SmoI	CTYRAG	4 cut(s)	129, 687, 766, 773
SpeI	ACTAGT	1 cut(s)	746
Sse9I	AATT	3 cut(s)	165, 358, 508
SspMI	CTAG	5 cut(s)	197, 269, 419, 521, 747
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	165, 358, 508
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	35, 116, 191, 317
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	71, 201, 228, 341, 553
XagI	CCTNNNNNAGG	1 cut(s)	757
XspI	CTAG	5 cut(s)	197, 269, 419, 521, 747
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.