Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Forward (+)

62543452 .. 62548114

Gene Structure 4663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAAGATTTGATCGATTTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCAAATGCAACCAAGCTCCAGATGCAAAAGATCCAGGAAATGGAGCAGTTAGCAAGTATTCAGGGCATGCCAACTGACAGGAACACTCTTAGTAATCCAATGGTGTTGCATCCCGGACTAAACAATCAAATGAATAACAACCAGCACATGGCCATTCGAGGAGCTTTGAGTGGCTCAGCACAAGCAGCTCTAGCGCTGACTAATTACCAGAATCTGCTCAAATGCAAATTCTCTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

9.34

Isoelectric Point (pI)

18.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	115, 223
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	270
AfiI	CCNNNNNNNGG	4 cut(s)	49, 50, 115, 223
AgsI	TTSAA	2 cut(s)	58, 312
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	3 cut(s)	91, 239, 263
AluI	AGCT	3 cut(s)	91, 239, 263
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	289
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	2 cut(s)	40, 225
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	2 cut(s)	26, 189
BalI	TGGCCA	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	26, 189
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	26, 110, 189
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	3 cut(s)	26, 110, 189
BmsI	GCATC	2 cut(s)	87, 193
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	250
BpuMI	CCSGG	2 cut(s)	26, 189
Bsa29I	ATCGAT	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 50, 115, 223
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	4 cut(s)	49, 50, 115, 223
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	42, 227
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	25, 189
BslI	CCNNNNNNNGG	4 cut(s)	49, 50, 115, 223
BsnI	GGCC	2 cut(s)	42, 227
Bsp143I	GATC	2 cut(s)	12, 105
Bsp1720I	GCTNAGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	42, 227
BspCNI	CTCAG	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	15
BspPI	GGATC	1 cut(s)	100
BssMI	GATC	2 cut(s)	12, 105
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	164, 250
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	15, 108
BstMBI	GATC	2 cut(s)	12, 105
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 260, 266
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	77, 145
BstSCI	CCNGG	3 cut(s)	24, 108, 187
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	42, 227
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	4 cut(s)	74, 142, 223, 315
CviJI	RGCY	7 cut(s)	42, 54, 91, 227, 239, 249, 263
CviKI_1	RGCY	7 cut(s)	42, 54, 91, 227, 239, 249, 263
DdeI	CTNAG	2 cut(s)	164, 250
DpnI	GATC	2 cut(s)	14, 107
DpnII	GATC	2 cut(s)	12, 105
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco47III	AGCGCT	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	4 cut(s)	77, 145, 226, 318
FaiI	YATR	4 cut(s)	75, 143, 224, 316
FatI	CATG	4 cut(s)	73, 141, 222, 314
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	42, 227
HapII	CCGG	2 cut(s)	25, 189
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	77, 145, 226, 318
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	25, 189
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	77, 83, 100, 184, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 260, 266
HpyF3I	CTNAG	2 cut(s)	164, 250
Hsp92II	CATG	4 cut(s)	77, 145, 226, 318
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	12, 105
LmnI	GCTCC	3 cut(s)	96, 118, 236
LpnPI	CCDG	9 cut(s)	38, 95, 107, 122, 122, 139, 202, 230, 296
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	87, 193
MaeI	CTAG	1 cut(s)	266
MalI	GATC	2 cut(s)	14, 107
MboI	GATC	2 cut(s)	12, 105
MboII	GAAGA	1 cut(s)	300
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	3 cut(s)	45, 277, 302
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	3 cut(s)	43, 78, 227
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	2 cut(s)	25, 189
MspR9I	CCNGG	3 cut(s)	26, 110, 189
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	97, 260, 266
NciI	CCSGG	2 cut(s)	26, 189
NdeII	GATC	2 cut(s)	12, 105
NlaIII	CATG	4 cut(s)	77, 145, 226, 318
NspI	RCATGY	2 cut(s)	77, 145
PaeI	GCATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	2 cut(s)	115, 223
PfoI	TCCNGGA	2 cut(s)	108, 187
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	78
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	12, 105
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	26, 110, 189
SetI	ASST	4 cut(s)	63, 93, 241, 265
SfaNI	GCATC	2 cut(s)	87, 193
SmiMI	CAYNNNNRTG	1 cut(s)	78
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	45, 277, 302
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	24, 108, 187
TaqI	TCGA	3 cut(s)	15, 70, 232
TasI	AATT	3 cut(s)	45, 277, 302
TfiI	GAWTC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	17, 221
Van91I	CCANNNNNTGG	2 cut(s)	115, 223
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	77, 145
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.