Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

3857191 .. 3859821

Gene Structure 2631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAAAGCAGTTCGAGAGTAAATACGGGCAACTTCGTGTTGTTCGTATCGTGTTTACACAAGATTTAAAGATATTGTCTTGGGAATTTGGTGCACGACGCCATGAAGAGCTTCTTCCCCGTAGGCTTGTTGCTCCACAGGTCTATCAGTTGTTTCAGGTTGCACAGAAGTGCCAGACTACGATTGCTGAAAGTGGATCTGAAGGGGTTTCTCAGCAGGATCTGCAAGCAAATAGCAATTTATATGTGAGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCGATGTCTGCCAGGAAAACAAAGTTGGCTCAATTGGTATAGTCCTGTTTTTTCTATTCCTCTTTCCATTTTGTAATTCTCTGCTGCTGCTTTGCATAGGGTTGAAAGTTTATCCTCGACATGCAAATGCAACCAAGATCCAGATGCAGGAAACGGAGCAGTTAGCAAGTATTCAGGGCATGCCAACTGACAGGAACACTGTTAATGGTGTTGCATCCCGGACTAGACAATCAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

7.62

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	15 - 106	2.9e-13	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	205, 228, 427
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	306
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AleI	CACNNNNGTG	1 cut(s)	169
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	97
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	3 cut(s)	205, 228, 427
AlwNI	CAGNNNCTG	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	379, 382
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	366, 369
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	514
BfaI	CTAG	1 cut(s)	519
BisI	GCNGC	2 cut(s)	380, 383
BlsI	GCNGC	2 cut(s)	381, 384
Bme1390I	CCNGG	2 cut(s)	308, 514
BmrFI	CCNGG	2 cut(s)	308, 514
BmsI	GCATC	2 cut(s)	429, 518
BpuMI	CCSGG	1 cut(s)	514
Bsa29I	ATCGAT	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	308
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	366, 369
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	197, 220, 294, 432
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	297
BspPI	GGATC	3 cut(s)	205, 228, 427
BspQI	GCTCTTC	1 cut(s)	102
BssMI	GATC	4 cut(s)	197, 220, 294, 432
BssNI	GRCGYC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	228, 476
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	509
BstKTI	GATC	4 cut(s)	200, 223, 297, 435
BstMBI	GATC	4 cut(s)	197, 220, 294, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	419, 478
BstSCI	CCNGG	2 cut(s)	306, 512
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	366, 369
BstX2I	RGATCY	3 cut(s)	197, 220, 432
BstYI	RGATCY	3 cut(s)	197, 220, 432
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	228, 476
CaiI	CAGNNNCTG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	108
CviAII	CATG	4 cut(s)	104, 283, 416, 475
CviJI	RGCY	3 cut(s)	112, 127, 324
CviKI_1	RGCY	3 cut(s)	112, 127, 324
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	4 cut(s)	199, 222, 296, 434
DpnII	GATC	4 cut(s)	197, 220, 294, 432
DraI	TTTAAA	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	264
FaeI	CATG	4 cut(s)	107, 286, 419, 478
FaiI	YATR	8 cut(s)	105, 244, 246, 284, 335, 392, 417, 476
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	4 cut(s)	103, 282, 415, 474
Fnu4HI	GCNGC	2 cut(s)	380, 383
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	380, 383
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	2 cut(s)	380, 383
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	107, 286, 419, 478
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	57, 95, 277
Hpy188I	TCNGA	3 cut(s)	202, 268, 529
Hpy188III	TCNNGA	2 cut(s)	16, 436
Hpy8I	GTNNAC	3 cut(s)	57, 95, 277
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	9 cut(s)	95, 164, 226, 259, 390, 419, 425, 442, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	107, 286, 419, 478
Kzo9I	GATC	4 cut(s)	197, 220, 294, 432
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	139, 451
Lsp1109I	GCAGC	2 cut(s)	366, 369
LweI	GCATC	2 cut(s)	429, 518
MaeI	CTAG	1 cut(s)	519
MalI	GATC	4 cut(s)	199, 222, 296, 434
MboI	GATC	4 cut(s)	197, 220, 294, 432
MboII	GAAGA	2 cut(s)	107, 119
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	3 cut(s)	197, 220, 432
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	86, 238, 327, 370
MnlI	CCTC	4 cut(s)	243, 262, 365, 420
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	68, 498
MslI	CAYNNNNRTG	2 cut(s)	169, 420
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	308, 514
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	4 cut(s)	197, 220, 294, 432
NlaIII	CATG	4 cut(s)	107, 286, 419, 478
NspI	RCATGY	2 cut(s)	419, 478
OliI	CACNNNNGTG	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	111
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	381, 384
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	3 cut(s)	197, 220, 432
RseI	CAYNNNNRTG	2 cut(s)	169, 420
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	68, 498
SatI	GCNGC	2 cut(s)	380, 383
Sau3AI	GATC	4 cut(s)	197, 220, 294, 432
ScrFI	CCNGG	2 cut(s)	308, 514
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	114, 144, 162, 254, 273
SfaNI	GCATC	2 cut(s)	429, 518
SmiMI	CAYNNNNRTG	2 cut(s)	169, 420
SphI	GCATGC	1 cut(s)	478
Sse9I	AATT	4 cut(s)	86, 238, 327, 370
SspMI	CTAG	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	306, 512
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	15, 297, 412
TasI	AATT	4 cut(s)	86, 238, 327, 370
Tru1I	TTAA	2 cut(s)	68, 498
Tru9I	TTAA	2 cut(s)	68, 498
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	379, 382
TspDTI	ATGAA	2 cut(s)	120, 299
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	93
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	2 cut(s)	419, 478
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.