Rh5BG173700

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012702
Physical Location & Seq
Reverse (-)
18145886 .. 18147594
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG173700.1

Sequence Viewer

Length: 327 bp
ATGACGACAGCCGCCATGCCAGCTCAACAATTTGTCCCCCAAAAATACCGAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCCTTTCAAAGGTTTGGCCTCGATCCCGAAGCTCGCGTTTGTCACCTGACCACCAGTTGACCACCACCGCAGTGACCGCCAGTGGTCACGAATCAGTCGTGACTTCTCTCCAATACTATTCCTCTCTGATTCAGTCGCGATGTAGTTCTAACAATCTCCAAATGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGCTGGTTTACATAAAATCCATGTAA

Protein Analysis

108

Amino Acids

11.95

Weight (kDa)

9.93

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 124, 226
AciI CCGC 3 cut(s) 12, 156, 165
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 253
AfiI CCNNNNNNNGG 3 cut(s) 63, 97, 296
AgsI TTSAA 2 cut(s) 96, 259
AleI CACNNNNGTG 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 3 cut(s) 23, 120, 304
AluI AGCT 3 cut(s) 23, 120, 304
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 253
Asp700I GAANNNNTTC 2 cut(s) 75, 91
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 123
BanII GRGCYC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbvCI CCTCAGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 296
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 97, 296
Bse1I ACTGG 2 cut(s) 142, 168
BseLI CCNNNNNNNGG 3 cut(s) 63, 97, 296
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 142, 168
Bsh1236I CGCG 2 cut(s) 124, 226
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 63, 97, 296
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 110, 262
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 3 cut(s) 12, 156, 165
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 2 cut(s) 124, 226
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 142, 168
BssMI GATC 2 cut(s) 110, 262
BstC8I GCNNGC 2 cut(s) 21, 122
BstDEI CTNAG 1 cut(s) 58
BstENI CCTNNNNNAGG 2 cut(s) 95, 294
BstFNI CGCG 2 cut(s) 124, 226
BstKTI GATC 2 cut(s) 113, 265
BstMBI GATC 2 cut(s) 110, 262
BstMWI GCNNNNNNNGC 3 cut(s) 20, 59, 164
BstSCI CCNGG 1 cut(s) 62
BstUI CGCG 2 cut(s) 124, 226
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 175
BtuMI TCGCGA 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 21, 122
CviAII CATG 2 cut(s) 16, 322
CviJI RGCY 8 cut(s) 11, 23, 53, 62, 106, 120, 287, 304
CviKI_1 RGCY 8 cut(s) 11, 23, 53, 62, 106, 120, 287, 304
DdeI CTNAG 1 cut(s) 58
DpnI GATC 2 cut(s) 112, 264
DpnII GATC 2 cut(s) 110, 262
Eco24I GRGCYC 1 cut(s) 55
EcoNI CCTNNNNNAGG 2 cut(s) 95, 294
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 2 cut(s) 19, 325
FaiI YATR 3 cut(s) 17, 314, 323
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 15, 321
Fnu4HI GCNGC 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 64
Hin1II CATG 2 cut(s) 19, 325
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 2 cut(s) 179, 217
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 147, 310
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 5 cut(s) 114, 176, 187, 225, 290
Hpy8I GTNNAC 2 cut(s) 147, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 59, 164
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 2 cut(s) 19, 325
Kzo9I GATC 2 cut(s) 110, 262
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 7 cut(s) 33, 77, 147, 155, 181, 290, 303
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 4 cut(s) 129, 160, 173, 187
MalI GATC 2 cut(s) 112, 264
MboI GATC 2 cut(s) 110, 262
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 29, 253
MnlI CCTC 4 cut(s) 67, 117, 220, 269
MroXI GAANNNNTTC 2 cut(s) 75, 91
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 64
MvnI CGCG 2 cut(s) 124, 226
MwoI GCNNNNNNNGC 3 cut(s) 20, 59, 164
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 110, 262
NlaIII CATG 2 cut(s) 19, 325
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 4 cut(s) 129, 160, 173, 187
NruI TCGCGA 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdmI GAANNNNTTC 2 cut(s) 75, 91
PfeI GAWTC 2 cut(s) 179, 217
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 262
RruI TCGCGA 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 110, 262
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 25, 102, 122, 136, 306
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 2 cut(s) 29, 253
SsiI CCGC 3 cut(s) 12, 156, 165
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 62
TaqI TCGA 2 cut(s) 85, 109
TasI AATT 2 cut(s) 29, 253
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 179, 217
TscAI CASTG 2 cut(s) 165, 175
TseFI GTSAC 4 cut(s) 129, 160, 173, 187
Tsp45I GTSAC 4 cut(s) 129, 160, 173, 187
TspDTI ATGAA 2 cut(s) 68, 266
TspRI CASTG 2 cut(s) 165, 175
XagI CCTNNNNNAGG 2 cut(s) 95, 294
XapI RAATTY 1 cut(s) 253
XmnI GAANNNNTTC 2 cut(s) 75, 91
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.