Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012702

Physical Location & Seq

Genomic Coordinates Reverse (-)

53238547 .. 53239657

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGGTTTCTCAACAAGATCTACAAGCAAATATCGCTGAATGAGTTGGGGTTTTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAGGTTGTGAACAGCATGAAAGATTTGATCCAATTCTGCCGGGAAAACAAAGTTGGCCCAATTGAGGGCTTGAAGGTTTATCCTCGACATGCGAATGCAACCAAGCTTCAGATGCAAAAGATGCAGGAAATGGAGCAGTTAGCAAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

79

Amino Acids

9.19

Weight (kDa)

9.47

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	13 - 54	1.3e-12	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012702)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035310
rosa_multiflora	Rmu_sc0002775.1_g000038
rosa_roxburghii	Rroxscaffold_4G00281640
rosa_rugosa	Rorug02G0403800 Rorug02G0570000 Rorug05G0073500 Rorug05G0073600
rosa_samantha	Rh1BG376100 Rh1CG389900 Rh1DG406700 Rh2AG359300 Rh3BG321500 Rh4CG212200 Rh5AG338300 Rh5BG173700 Rh6AG113200 Rh6AG167100 Rh6BG022200 Rh6BG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	151, 152
AgsI	TTSAA	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	189, 198
BpuMI	CCSGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 152
BseLI	CCNNNNNNNGG	2 cut(s)	151, 152
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	151, 152
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	18, 114
BspANI	GGCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	109
BssMI	GATC	2 cut(s)	18, 114
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	21, 117
BstMBI	GATC	2 cut(s)	18, 114
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 199, 208
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	2 cut(s)	103, 176
CviJI	RGCY	3 cut(s)	144, 156, 193
CviKI_1	RGCY	3 cut(s)	144, 156, 193
DpnI	GATC	2 cut(s)	20, 116
DpnII	GATC	2 cut(s)	18, 114
Eco32I	GATATC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	84
FaeI	CATG	2 cut(s)	106, 179
FaiI	YATR	3 cut(s)	66, 104, 177
FatI	CATG	2 cut(s)	102, 175
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	2 cut(s)	106, 179
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	88, 198
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	79, 185, 202, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 199, 208
Hsp92II	CATG	2 cut(s)	106, 179
Kzo9I	GATC	2 cut(s)	18, 114
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	140, 197
LweI	GCATC	2 cut(s)	189, 198
MalI	GATC	2 cut(s)	20, 116
MboI	GATC	2 cut(s)	18, 114
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	2 cut(s)	119, 147
MnlI	CCTC	4 cut(s)	63, 82, 145, 180
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	34, 199, 208
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	18, 114
NlaIII	CATG	2 cut(s)	106, 179
NspI	RCATGY	1 cut(s)	179
PctI	GAATGC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	18, 114
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	4 cut(s)	74, 93, 165, 195
SfaNI	GCATC	2 cut(s)	189, 198
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	119, 147
StyD4I	CCNGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	119, 147
TspDTI	ATGAA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.